View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21319_low_26 (Length: 321)

Name: NF21319_low_26
Description: NF21319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21319_low_26
NF21319_low_26
[»] chr3 (4 HSPs)
chr3 (18-313)||(22750306-22750601)
chr3 (34-290)||(22727003-22727259)
chr3 (34-296)||(22739718-22739980)
chr3 (34-190)||(22740667-22740823)
[»] chr5 (4 HSPs)
chr5 (22-313)||(14372474-14372765)
chr5 (22-290)||(41451602-41451870)
chr5 (22-263)||(14240593-14240834)
chr5 (22-282)||(41438433-41438693)
[»] chr8 (2 HSPs)
chr8 (22-92)||(2301233-2301303)
chr8 (22-92)||(2325452-2325522)
[»] scaffold0019 (1 HSPs)
scaffold0019 (22-70)||(7971-8019)
[»] chr6 (1 HSPs)
chr6 (22-70)||(11672985-11673033)


Alignment Details
Target: chr3 (Bit Score: 288; Significance: 1e-161; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 18 - 313
Target Start/End: Original strand, 22750306 - 22750601
Alignment:
Q  18 aaacggatcatcaaatagatatatatcagcatcttgatataaagcacgagcaatttgtactctttgtttctgtccgccgctcaaatttattcccctctcc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22750306 aaacggatcatcaaatagatatatatcagcatcttgatataaagcacgagcaatttgtactctttgtttctgtccgccgctcaaatttattcccctctcc 22750405  T
Q  118 cctataattgtttgatcgccaaatgataaaatctcgagatccttctttagtgaacatgcttcaagaaccttctcatatctttgcctttccatatccttcc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22750406 cctataattgtttgatcgccaaatgataaaatctcgagatccttctttagtgaacatgcttcaagaaccttctcatatctttgcctttccatatccttcc 22750505  T
Q  218 caaacaatatgttattttctatcttgctactttgtatccatggtgactgtgctacataagcctttgtaccacacacttttaaaatacctgatatct 313  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  22750506 caaacaatatgttattttctatcttgctactttgtatccatggcgactgtgctacataagcctttgtaccacacacttttaaaatccctgatatct 22750601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 34 - 290
Target Start/End: Original strand, 22727003 - 22727259
Alignment:
Q  34 agatatatatcagcatcttgatataaagcacgagcaatttgtactctttgtttctgtccgccgctcaaatttattcccctctcccctataattgtttgat 133  Q
    |||||||||||||||||||| || | ||||||||| |||||||||||||| |||||||| || |||||||| |||||| |||| || ||||| || ||||    
T  22727003 agatatatatcagcatcttggtaaagagcacgagcgatttgtactctttgcttctgtccaccactcaaattgattcccttctctccaataatggtctgat 22727102  T
Q  134 cgccaaatgataaaatctcgagatccttctttagtgaacatgcttcaagaaccttctcatatctttgcctttccatatccttcccaaacaatatgttatt 233  Q
    | ||||||| ||||| |||||| || ||||| | |||||||||||| |||||||||| |||  ||| ||| ||||| ||  | ||||| | ||| ||||     
T  22727103 caccaaatggtaaaacctcgaggtctttcttcaatgaacatgcttctagaaccttctaatacttttccctatccatctctctaccaaatagtatattatc 22727202  T
Q  234 ttctatcttgctactttgtatccatggtgactgtgctacataagcctttgtaccaca 290  Q
    ||||||||||| ||| |||||||| ||||| || || |||||||||||||| |||||    
T  22727203 ttctatcttgccactctgtatccacggtgattgagcaacataagcctttgttccaca 22727259  T

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Target: chr3; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 34 - 296
Target Start/End: Complemental strand, 22739980 - 22739718
Alignment:
Q  34 agatatatatcagcatcttgatataaagcacgagcaatttgtactctttgtttctgtccgccgctcaaatttattcccctctcccctataattgtttgat 133  Q
    ||||| |||||||||| ||| || | ||||||||||||||||||||||||||||||||| || |||||||| |||||  |||| || ||||| |||||||    
T  22739980 agataaatatcagcattttggtaaagagcacgagcaatttgtactctttgtttctgtccaccactcaaattgattcctttctctccaataatggtttgat 22739881  T
Q  134 cgccaaatgataaaatctcgagatccttctttagtgaacatgcttcaagaaccttctcatatctttgcctt-tccatatccttcccaaacaatatgttat 232  Q
    | | ||||| ||||| |||||| || ||||| | |||||||||||| |||||||||||||| |||| |||| ||||| ||  | ||||| | ||| || |    
T  22739880 cacgaaatggtaaaacctcgaggtctttcttcaatgaacatgcttctagaaccttctcata-cttttccttatccatctctctaccaaatagtatattct 22739782  T
Q  233 tttctatcttgctactttgtatccatggtgactgtgctacataagcctttgtaccacacacttt 296  Q
     ||||||||||| ||| ||||||||||| || || || |||||||||||||| |||||||||||    
T  22739781 cttctatcttgccactctgtatccatggcgattgagcaacataagcctttgttccacacacttt 22739718  T

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Target: chr3; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 34 - 190
Target Start/End: Complemental strand, 22740823 - 22740667
Alignment:
Q  34 agatatatatcagcatcttgatataaagcacgagcaatttgtactctttgtttctgtccgccgctcaaatttattcccctctcccctataattgtttgat 133  Q
    |||||||||||||||||||| || | ||||||||| ||||||| |||||| |||||||| || |||||||| |||||| |||| || ||||| || ||||    
T  22740823 agatatatatcagcatcttggtaaagagcacgagcgatttgtagtctttgcttctgtccaccactcaaattgattcccttctctccaataatggtctgat 22740724  T
Q  134 cgccaaatgataaaatctcgagatccttctttagtgaacatgcttcaagaaccttct 190  Q
    | ||||||| ||||| |||||| || ||||| | |||||||||||| ||||||||||    
T  22740723 caccaaatggtaaaacctcgaggtctttcttcaatgaacatgcttctagaaccttct 22740667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 100; Significance: 2e-49; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 22 - 313
Target Start/End: Complemental strand, 14372765 - 14372474
Alignment:
Q  22 ggatcatcaaatagatatatatcagcatcttgatataaagcacgagcaatttgtactctttgtttctgtccgccgctcaaatttattcccctctccccta 121  Q
    |||||||||||||||||||||||||||||||| || | ||| ||||||||||||| ||| ||||||||||| || |||||||||||||| | ||| ||||    
T  14372765 ggatcatcaaatagatatatatcagcatcttggtaaagagcgcgagcaatttgtattctctgtttctgtccaccactcaaatttattccacgctcgccta 14372666  T
Q  122 taattgtttgatcgccaaatgataaaatctcgagatccttctttagtgaacatgcttcaagaaccttctcatatctttgcctttccatatccttcccaaa 221  Q
    ||| ||| ||||| |||||||| || || || ||||||||||| || |||||||||||||| ||| ||||||| |||| | |  |||| |  |  |||||    
T  14372665 taactgtctgatcaccaaatgacaatatttccagatccttcttcagggaacatgcttcaagtaccatctcatacctttccttaaccatgtgttcaccaaa 14372566  T
Q  222 caatatgttattttctatcttgctactttgtatccatggtgactgtgctacataagcctttgtaccacacacttttaaaatacctgatatct 313  Q
    |||||| ||||  |||||| ||| |||||| ||||||||||| || || ||||| |||||||| ||||| ||||| |  || ||||||||||    
T  14372565 caatatattatcctctatcgtgccactttgaatccatggtgattgagcaacataggcctttgttccacaaactttaaggatgcctgatatct 14372474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 22 - 290
Target Start/End: Original strand, 41451602 - 41451870
Alignment:
Q  22 ggatcatcaaatagatatatatcagcatcttgatataaagcacgagcaatttgtactctttgtttctgtccgccgctcaaatttattcccctctccccta 121  Q
    ||||| ||||||||||| |||||||||||||| || | ||||||||| ||||||| ||||||||||||||| || |||||||||||||| | ||| ||||    
T  41451602 ggatcgtcaaatagatagatatcagcatcttggtaaagagcacgagctatttgtattctttgtttctgtccaccactcaaatttattccacgctcgccta 41451701  T
Q  122 taattgtttgatcgccaaatgataaaatctcgagatccttctttagtgaacatgcttcaagaaccttctcatatctttgcctttccatatccttcccaaa 221  Q
    ||| ||| ||||| |||||||| || || || | ||||||||| |  |||||||||||||| ||||| ||||| |||| |||  |||| |  |  |||||    
T  41451702 taactgtctgatcaccaaatgacaagatttccaaatccttcttcaaggaacatgcttcaagtaccttttcatacctttccctaaccatgttttcaccaaa 41451801  T
Q  222 caatatgttattttctatcttgctactttgtatccatggtgactgtgctacataagcctttgtaccaca 290  Q
    |||||| ||||  |||||||||| |||||| ||||||||||| || || ||||| |||||||| |||||    
T  41451802 caatatattatcctctatcttgccactttgaatccatggtgattgagcgacataggcctttgttccaca 41451870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 22 - 263
Target Start/End: Original strand, 14240593 - 14240834
Alignment:
Q  22 ggatcatcaaatagatatatatcagcatcttgatataaagcacgagcaatttgtactctttgtttctgtccgccgctcaaatttattcccctctccccta 121  Q
    ||||||||||||||||| |||||||||||||| || | ||| || |||||||||| ||||||||||||||| || |||||||||||||| | ||| ||||    
T  14240593 ggatcatcaaatagatagatatcagcatcttggtaaagagcgcgcgcaatttgtattctttgtttctgtccaccactcaaatttattccgcgctcgccta 14240692  T
Q  122 taattgtttgatcgccaaatgataaaatctcgagatccttctttagtgaacatgcttcaagaaccttctcatatctttgcctttccatatccttcccaaa 221  Q
    |||  |||||||| |||||||| || || || |||||||||||||   | || ||||| || ||||| ||||| |||| |||  |||| |  || |||||    
T  14240693 taaccgtttgatcaccaaatgacaagatttccagatccttctttaagtagcaagcttcgagtaccttttcatacctttccctaaccatttgtttgccaaa 14240792  T
Q  222 caatatgttattttctatcttgctactttgtatccatggtga 263  Q
    |||||| ||||  |||||||||| |||||| |||||||||||    
T  14240793 caatatattatcctctatcttgccactttgaatccatggtga 14240834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 22 - 282
Target Start/End: Original strand, 41438433 - 41438693
Alignment:
Q  22 ggatcatcaaatagatatatatcagcatcttgatataaagcacgagcaatttgtactctttgtttctgtccgccgctcaaatttattcccctctccccta 121  Q
    ||||||||||||||||| |||||||||||||| || | ||||||||| ||||||| ||||||||||||||| || |||||||||||||| | ||| ||||    
T  41438433 ggatcatcaaatagatagatatcagcatcttggtaaagagcacgagctatttgtattctttgtttctgtccaccactcaaatttattccacgctcgccta 41438532  T
Q  122 taattgtttgatcgccaaatgataaaatctcgagatccttctttagtgaacatgcttcaagaaccttctcatatctttgcctttccatatccttcccaaa 221  Q
    ||| ||| ||||| |||||||| || || || | ||||||||| |  | |||||||||||| ||||| ||||| |||| |||  |||| |  |  |||||    
T  41438533 taactgtctgatcaccaaatgacaagatttctaaatccttcttcaaggtacatgcttcaagtaccttttcatacctttccctaaccatgttttcaccaaa 41438632  T
Q  222 caatatgttattttctatcttgctactttgtatccatggtgactgtgctacataagccttt 282  Q
     ||||| ||||  |||||||||| |||||| ||||||||| | || || ||||| ||||||    
T  41438633 taatatattatcctctatcttgccactttgaatccatggtaattgagcaacataggccttt 41438693  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 92
Target Start/End: Complemental strand, 2301303 - 2301233
Alignment:
Q  22 ggatcatcaaatagatatatatcagcatcttgatataaagcacgagcaatttgtactctttgtttctgtcc 92  Q
    ||||||||||| || ||||| |||||||||||||| | ||| | ||| || |||| |||||||||||||||    
T  2301303 ggatcatcaaaaaggtatatgtcagcatcttgataaacagctctagctatctgtattctttgtttctgtcc 2301233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 92
Target Start/End: Complemental strand, 2325522 - 2325452
Alignment:
Q  22 ggatcatcaaatagatatatatcagcatcttgatataaagcacgagcaatttgtactctttgtttctgtcc 92  Q
    ||||||||||| || ||||| |||||||||||||| | ||| | ||| || |||| |||||||||||||||    
T  2325522 ggatcatcaaaaaggtatatgtcagcatcttgataaacagctctagctatctgtattctttgtttctgtcc 2325452  T

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Target: scaffold0019 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 7971 - 8019
Alignment:
Q  22 ggatcatcaaatagatatatatcagcatcttgatataaagcacgagcaa 70  Q
    |||||||| |||||||||||||||||||  ||||| | |||||||||||    
T  7971 ggatcatctaatagatatatatcagcattctgataaagagcacgagcaa 8019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 11672985 - 11673033
Alignment:
Q  22 ggatcatcaaatagatatatatcagcatcttgatataaagcacgagcaa 70  Q
    |||||||| |||||||||| |||||||| |||||| | |||||||||||    
T  11672985 ggatcatccaatagatataaatcagcattttgatagagagcacgagcaa 11673033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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