View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21319_low_28 (Length: 313)
Name: NF21319_low_28
Description: NF21319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21319_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 22 - 241
Target Start/End: Original strand, 386045 - 386245
Alignment:
| Q |
22 |
cctgatgaagggatagaaaatcgttatattcacaattattccaactttgaacaatattatgtaaatttggacggacccatgtaaactatatttcaatggc |
121 |
Q |
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| T |
386045 |
cctgatgaagggatataaaatcgttatattcacaattattccaactttgaacaatattatgtaaatttggac----ccatgtaaactatatttcaatggc |
386140 |
T |
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| Q |
122 |
ttatgccacaataaaggtagtgggatcataatattgcccttctggtgagtttttagttgacaggtttacatgtatgtaacttacaaatcgatgaaacatg |
221 |
Q |
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| T |
386141 |
ttatgccacaataaaggtagtgggatcataatattgcccttctggtgagtttttagttgacaggtttac---------------aaatcgatgaaacatg |
386225 |
T |
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| Q |
222 |
tgggttgttttaatatagta |
241 |
Q |
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|||||||||||||||||||| |
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| T |
386226 |
tgggttgttttaatatagta |
386245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 237 - 313
Target Start/End: Original strand, 386270 - 386346
Alignment:
| Q |
237 |
tagtatgcaagaatgaaaaatatatcttgtaaatgagtttcatacgtgttctttcaacatttctagttagagcatta |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
386270 |
tagtatgcaagaatgaaaaatatatcttgtaaatgagtttcatacgtgttctttcaacatttctagttagagcatta |
386346 |
T |
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