View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21319_low_33 (Length: 291)
Name: NF21319_low_33
Description: NF21319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21319_low_33 |
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Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 5 - 273
Target Start/End: Complemental strand, 14176288 - 14176001
Alignment:
| Q |
5 |
ggtagataatactcaactggtaaaagaatataaagacatttgatatgttgtggtatgagttcaaatatacaatttcctacggctaggccgtaagtctatg |
104 |
Q |
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| T |
14176288 |
ggtaaatattactcaactggtaaaagaatataaagacattcgatatgttgtggtatgagttcaaatatacaatttcctacggctaggccgtaagtctatg |
14176189 |
T |
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| Q |
105 |
cgagtttcactgctagactcttaaaaacaaa----------acaatataatagaagcaaatgcaaagcaacgtataagaaaagaatcccagatcatcgat |
194 |
Q |
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| T |
14176188 |
cgagtttcaccgctagactcttaaaaacaaaacaaaacaaaacaatataatagaagcaaatgcaaagcaacgtataagaaaagaatcccagatcatggat |
14176089 |
T |
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| Q |
195 |
cc---------cagtgaaatttgccacccttgcaaccataaagggacgaaaatatacatcgctatattcccgtgcttttccatgcaaa |
273 |
Q |
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| T |
14176088 |
cccattgaaatcattgaaatttgccacccttgcaaccataaagggacgaaaatatacatcactatattcccgtgcttttccatgcaaa |
14176001 |
T |
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