View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21319_low_38 (Length: 246)
Name: NF21319_low_38
Description: NF21319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21319_low_38 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 24 - 246
Target Start/End: Complemental strand, 45144460 - 45144232
Alignment:
| Q |
24 |
gcctgaaatcattaactcttgggaactcatggaaggcctcgacaccgaaagcttccgcttctcacccctaactccaccatcatcaaaaccctctcacaaa |
123 |
Q |
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| T |
45144460 |
gcctgaaatcattaactcttgggaactcatggaaggcctagacaccgaaagcttccgcttctcacccctaactccaccatcatcaaaaccctctcacaaa |
45144361 |
T |
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| Q |
124 |
gaaaacaccaacccaaacctaaatctaaaccta------aaccctgctttgaaaaaacccggttcgacgctttcggatcggtttgagaggatatgtccac |
217 |
Q |
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| T |
45144360 |
gaaaacaccaatccaaacctaaacctaaacctaaacctaaaccctgctttgaaaaaacctggttggacgctttcggatcggtttgagaggatatgtccac |
45144261 |
T |
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| Q |
218 |
caaacggagagaagaaagtggtgatctat |
246 |
Q |
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| T |
45144260 |
caaacggagagaagaaagtggtgatctat |
45144232 |
T |
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