View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21319_low_40 (Length: 244)
Name: NF21319_low_40
Description: NF21319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21319_low_40 |
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| [»] scaffold0794 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 4 - 227
Target Start/End: Complemental strand, 11468949 - 11468726
Alignment:
| Q |
4 |
aagacataaaattaggcaatatctgttctttgtcctggattttgaaatgtatatataagttgcaaacttgtttatacatacttcatatactacattatat |
103 |
Q |
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| T |
11468949 |
aagacataaaataaggcaatatctgttctgtgtcctggattttgaaatgtatatataagttgcaaacttgtttatacatacttcatatactacattatat |
11468850 |
T |
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| Q |
104 |
tcatcaaaacaacacacacataagacatcaccaaagcttaatctataaaacaaatggatttcaagagcaatggtagtgaagaaactcagctgtatcatgc |
203 |
Q |
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| T |
11468849 |
tcatcaaaacaacacacacataagacatcaccaaagcttaatctataaaacaaatggatttcaagagcaatggcagtgaagaaactcagctgtatcatgc |
11468750 |
T |
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| Q |
204 |
tcaaatccatttatacaaacatgt |
227 |
Q |
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|||||||||||||||||||||||| |
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| T |
11468749 |
tcaaatccatttatacaaacatgt |
11468726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 4 - 227
Target Start/End: Original strand, 11522512 - 11522735
Alignment:
| Q |
4 |
aagacataaaattaggcaatatctgttctttgtcctggattttgaaatgtatatataagttgcaaacttgtttatacatacttcatatactacattatat |
103 |
Q |
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| T |
11522512 |
aagacataaaataaggcaatatctgttctgtgtcctggattttgaaatgtatatataagttgcaaacttgtttatacatacttcatatactacattatat |
11522611 |
T |
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| Q |
104 |
tcatcaaaacaacacacacataagacatcaccaaagcttaatctataaaacaaatggatttcaagagcaatggtagtgaagaaactcagctgtatcatgc |
203 |
Q |
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| T |
11522612 |
tcatcaaaacaacacacacataagacatcaccaaagcttaatctataaaacaaatggatttcaagagcaatggcagtgaagaaactcagctgtatcatgc |
11522711 |
T |
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| Q |
204 |
tcaaatccatttatacaaacatgt |
227 |
Q |
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| T |
11522712 |
tcaaatccatttatacaaacatgt |
11522735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 155 - 225
Target Start/End: Complemental strand, 11445826 - 11445756
Alignment:
| Q |
155 |
aaatggatttcaagagcaatggtagtgaagaaactcagctgtatcatgctcaaatccatttatacaaacat |
225 |
Q |
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| T |
11445826 |
aaatggattccagtagcaatggcagtgaagaaagtcagctatatcatgctcaaatccatctgtacaaacat |
11445756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 155 - 225
Target Start/End: Original strand, 11507033 - 11507103
Alignment:
| Q |
155 |
aaatggatttcaagagcaatggtagtgaagaaactcagctgtatcatgctcaaatccatttatacaaacat |
225 |
Q |
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| T |
11507033 |
aaatggatttcagtagcaatggcagtgaagaaaatcaactgtatcacgctcaaatccatctgtacaaacat |
11507103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 155 - 225
Target Start/End: Original strand, 11547264 - 11547334
Alignment:
| Q |
155 |
aaatggatttcaagagcaatggtagtgaagaaactcagctgtatcatgctcaaatccatttatacaaacat |
225 |
Q |
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||||||||| || |||||||| |||||||||| |||| | |||||||||||||||||| | ||||||||| |
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| T |
11547264 |
aaatggattccagtagcaatggcagtgaagaaagtcagttttatcatgctcaaatccatctgtacaaacat |
11547334 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 227
Target Start/End: Original strand, 34775649 - 34775696
Alignment:
| Q |
180 |
tgaagaaactcagctgtatcatgctcaaatccatttatacaaacatgt |
227 |
Q |
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| T |
34775649 |
tgaagaaagtgaactgtatcatgctcaaatccatttgtacaaacatgt |
34775696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 227
Target Start/End: Original strand, 34783870 - 34783917
Alignment:
| Q |
180 |
tgaagaaactcagctgtatcatgctcaaatccatttatacaaacatgt |
227 |
Q |
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| T |
34783870 |
tgaagaaagtgaactgtatcatgctcaaatccatttgtacaaacatgt |
34783917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0794 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0794
Description:
Target: scaffold0794; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 155 - 225
Target Start/End: Original strand, 1690 - 1760
Alignment:
| Q |
155 |
aaatggatttcaagagcaatggtagtgaagaaactcagctgtatcatgctcaaatccatttatacaaacat |
225 |
Q |
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| T |
1690 |
aaatggatttcagtagcaatggcagtgaagaaaatcaactgtatcacgctcaaatccatctgtacaaacat |
1760 |
T |
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