View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21319_low_41 (Length: 241)

Name: NF21319_low_41
Description: NF21319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21319_low_41
NF21319_low_41
[»] chr4 (23 HSPs)
chr4 (1-71)||(1229726-1229796)
chr4 (136-170)||(1031754-1031788)
chr4 (136-170)||(31240647-31240681)
chr4 (137-170)||(51318703-51318736)
chr4 (137-170)||(54800998-54801031)
chr4 (136-167)||(6370979-6371010)
chr4 (136-167)||(11997684-11997715)
chr4 (136-167)||(15596395-15596426)
chr4 (136-167)||(26885290-26885321)
chr4 (136-167)||(37547064-37547095)
chr4 (137-167)||(4896541-4896571)
chr4 (137-167)||(11064130-11064160)
chr4 (137-167)||(26440676-26440706)
chr4 (137-167)||(34116581-34116611)
chr4 (136-170)||(35332705-35332739)
chr4 (137-167)||(41119511-41119541)
chr4 (137-167)||(46173550-46173580)
chr4 (136-170)||(53091257-53091291)
chr4 (137-170)||(5234498-5234531)
chr4 (137-170)||(31804367-31804400)
chr4 (136-165)||(51389117-51389146)
chr4 (136-164)||(44165908-44165936)
chr4 (138-170)||(45548822-45548854)
[»] chr5 (10 HSPs)
chr5 (136-170)||(36581503-36581537)
chr5 (136-167)||(19127123-19127154)
chr5 (136-167)||(34381011-34381042)
chr5 (136-167)||(39595271-39595302)
chr5 (137-167)||(6865817-6865847)
chr5 (137-167)||(23991175-23991205)
chr5 (137-167)||(28811429-28811459)
chr5 (137-167)||(36713219-36713249)
chr5 (137-170)||(35814453-35814486)
chr5 (139-167)||(12910786-12910814)
[»] chr3 (27 HSPs)
chr3 (136-170)||(31176478-31176512)
chr3 (137-170)||(9027873-9027906)
chr3 (137-170)||(43409400-43409433)
chr3 (136-167)||(14957835-14957866)
chr3 (136-167)||(20380930-20380961)
chr3 (136-167)||(51464313-51464344)
chr3 (137-167)||(108431-108461)
chr3 (137-167)||(1901967-1901997)
chr3 (137-167)||(1911413-1911443)
chr3 (137-167)||(3483132-3483162)
chr3 (137-167)||(5398918-5398948)
chr3 (137-167)||(12792638-12792668)
chr3 (140-170)||(14207378-14207408)
chr3 (140-170)||(14215126-14215156)
chr3 (137-167)||(18169157-18169187)
chr3 (137-167)||(20215948-20215978)
chr3 (137-167)||(34607961-34607991)
chr3 (137-167)||(35272027-35272057)
chr3 (137-167)||(41877652-41877682)
chr3 (137-167)||(48945847-48945877)
chr3 (137-170)||(29800587-29800620)
chr3 (137-170)||(43499599-43499632)
chr3 (137-170)||(47849672-47849705)
chr3 (137-170)||(55344334-55344367)
chr3 (137-165)||(34271533-34271561)
chr3 (137-165)||(43176202-43176230)
chr3 (136-164)||(50294156-50294184)
[»] chr2 (19 HSPs)
chr2 (136-170)||(12600047-12600081)
chr2 (137-170)||(13553147-13553180)
chr2 (136-167)||(30856806-30856837)
chr2 (137-167)||(4738613-4738643)
chr2 (137-167)||(5167783-5167813)
chr2 (137-167)||(6365186-6365216)
chr2 (137-167)||(15283291-15283321)
chr2 (137-167)||(33296112-33296142)
chr2 (137-167)||(36132974-36133004)
chr2 (137-167)||(36435681-36435711)
chr2 (137-167)||(41040266-41040296)
chr2 (137-167)||(42283280-42283310)
chr2 (137-170)||(13711061-13711094)
chr2 (137-170)||(22966786-22966819)
chr2 (137-170)||(34442113-34442146)
chr2 (137-170)||(35792494-35792527)
chr2 (137-170)||(39247501-39247534)
chr2 (138-170)||(26321735-26321767)
chr2 (138-170)||(26321903-26321935)
[»] chr8 (12 HSPs)
chr8 (137-170)||(32725818-32725851)
chr8 (137-170)||(40842014-40842047)
chr8 (136-167)||(1796495-1796526)
chr8 (137-167)||(5502371-5502401)
chr8 (137-167)||(8841030-8841060)
chr8 (137-167)||(12732842-12732872)
chr8 (137-167)||(22852880-22852910)
chr8 (137-167)||(28927681-28927711)
chr8 (137-167)||(45101396-45101426)
chr8 (137-170)||(69629-69662)
chr8 (136-165)||(1370317-1370346)
chr8 (137-170)||(39021481-39021514)
[»] chr7 (14 HSPs)
chr7 (137-170)||(38023462-38023495)
chr7 (137-170)||(43079670-43079703)
chr7 (136-167)||(31982056-31982087)
chr7 (137-167)||(2469703-2469733)
chr7 (137-167)||(22330661-22330691)
chr7 (136-170)||(29763829-29763863)
chr7 (137-167)||(37352020-37352050)
chr7 (137-167)||(41966332-41966362)
chr7 (137-170)||(18157223-18157256)
chr7 (137-170)||(42942417-42942450)
chr7 (137-170)||(43025809-43025842)
chr7 (139-167)||(28596908-28596936)
chr7 (137-165)||(30941178-30941206)
chr7 (138-170)||(37173012-37173044)
[»] scaffold0026 (1 HSPs)
scaffold0026 (136-167)||(113624-113655)
[»] chr6 (5 HSPs)
chr6 (136-167)||(32457293-32457324)
chr6 (137-167)||(30796116-30796146)
chr6 (138-167)||(6435037-6435066)
chr6 (137-170)||(8173350-8173383)
chr6 (137-170)||(32253780-32253813)
[»] chr1 (15 HSPs)
chr1 (136-167)||(5309081-5309112)
chr1 (136-167)||(32821634-32821665)
chr1 (137-167)||(25302684-25302714)
chr1 (137-167)||(31427998-31428028)
chr1 (136-170)||(45333355-45333389)
chr1 (137-167)||(45740585-45740615)
chr1 (137-167)||(49425738-49425768)
chr1 (137-167)||(49453491-49453521)
chr1 (137-167)||(50226920-50226950)
chr1 (137-170)||(586899-586932)
chr1 (136-165)||(25098831-25098860)
chr1 (137-170)||(27352630-27352663)
chr1 (137-170)||(29489397-29489430)
chr1 (138-167)||(32966268-32966297)
chr1 (138-170)||(1523332-1523364)
[»] scaffold0011 (2 HSPs)
scaffold0011 (136-170)||(18594-18628)
scaffold0011 (137-167)||(219705-219735)
[»] scaffold0330 (1 HSPs)
scaffold0330 (137-170)||(4041-4074)
[»] scaffold0131 (1 HSPs)
scaffold0131 (138-167)||(15575-15604)
[»] scaffold0018 (1 HSPs)
scaffold0018 (137-170)||(36002-36035)
[»] scaffold0003 (1 HSPs)
scaffold0003 (137-170)||(88808-88841)


Alignment Details
Target: chr4 (Bit Score: 71; Significance: 3e-32; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 1229796 - 1229726
Alignment:
1 tttgattggccttccatccctttgagctcctcttgataatttgatacctataaccaaaataaaacacacac 71  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
1229796 tttgattggccttccatccctttgagctcctcttgataatttgatacctataaccaaaataaaacacacac 1229726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 136 - 170
Target Start/End: Original strand, 1031754 - 1031788
Alignment:
136 tgagaaatgatatttgtacaaccactttgtgataa 170  Q
    |||||||||||||||||||||||||||||||||||    
1031754 tgagaaatgatatttgtacaaccactttgtgataa 1031788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 136 - 170
Target Start/End: Original strand, 31240647 - 31240681
Alignment:
136 tgagaaatgatatttgtacaaccactttgtgataa 170  Q
    |||||||||||||||||||||||||||||||||||    
31240647 tgagaaatgatatttgtacaaccactttgtgataa 31240681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 170
Target Start/End: Original strand, 51318703 - 51318736
Alignment:
137 gagaaatgatatttgtacaaccactttgtgataa 170  Q
    ||||||||||||||||||||||||||||||||||    
51318703 gagaaatgatatttgtacaaccactttgtgataa 51318736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 170
Target Start/End: Original strand, 54800998 - 54801031
Alignment:
137 gagaaatgatatttgtacaaccactttgtgataa 170  Q
    ||||||||||||||||||||||||||||||||||    
54800998 gagaaatgatatttgtacaaccactttgtgataa 54801031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 167
Target Start/End: Original strand, 6370979 - 6371010
Alignment:
136 tgagaaatgatatttgtacaaccactttgtga 167  Q
    ||||||||||||||||||||||||||||||||    
6370979 tgagaaatgatatttgtacaaccactttgtga 6371010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 167
Target Start/End: Original strand, 11997684 - 11997715
Alignment:
136 tgagaaatgatatttgtacaaccactttgtga 167  Q
    ||||||||||||||||||||||||||||||||    
11997684 tgagaaatgatatttgtacaaccactttgtga 11997715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 167
Target Start/End: Original strand, 15596395 - 15596426
Alignment:
136 tgagaaatgatatttgtacaaccactttgtga 167  Q
    ||||||||||||||||||||||||||||||||    
15596395 tgagaaatgatatttgtacaaccactttgtga 15596426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 167
Target Start/End: Original strand, 26885290 - 26885321
Alignment:
136 tgagaaatgatatttgtacaaccactttgtga 167  Q
    ||||||||||||||||||||||||||||||||    
26885290 tgagaaatgatatttgtacaaccactttgtga 26885321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 167
Target Start/End: Original strand, 37547064 - 37547095
Alignment:
136 tgagaaatgatatttgtacaaccactttgtga 167  Q
    ||||||||||||||||||||||||||||||||    
37547064 tgagaaatgatatttgtacaaccactttgtga 37547095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 167
Target Start/End: Complemental strand, 4896571 - 4896541
Alignment:
137 gagaaatgatatttgtacaaccactttgtga 167  Q
    |||||||||||||||||||||||||||||||    
4896571 gagaaatgatatttgtacaaccactttgtga 4896541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 167
Target Start/End: Complemental strand, 11064160 - 11064130
Alignment:
137 gagaaatgatatttgtacaaccactttgtga 167  Q
    |||||||||||||||||||||||||||||||    
11064160 gagaaatgatatttgtacaaccactttgtga 11064130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 167
Target Start/End: Original strand, 26440676 - 26440706
Alignment:
137 gagaaatgatatttgtacaaccactttgtga 167  Q
    |||||||||||||||||||||||||||||||    
26440676 gagaaatgatatttgtacaaccactttgtga 26440706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 167
Target Start/End: Complemental strand, 34116611 - 34116581
Alignment:
137 gagaaatgatatttgtacaaccactttgtga 167  Q
    |||||||||||||||||||||||||||||||    
34116611 gagaaatgatatttgtacaaccactttgtga 34116581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 170
Target Start/End: Original strand, 35332705 - 35332739
Alignment:
136 tgagaaatgatatttgtacaaccactttgtgataa 170  Q
    |||||||||||||||||||||||||||| ||||||    
35332705 tgagaaatgatatttgtacaaccactttatgataa 35332739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 167
Target Start/End: Complemental strand, 41119541 - 41119511
Alignment:
137 gagaaatgatatttgtacaaccactttgtga 167  Q
    |||||||||||||||||||||||||||||||    
41119541 gagaaatgatatttgtacaaccactttgtga 41119511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 167
Target Start/End: Original strand, 46173550 - 46173580
Alignment:
137 gagaaatgatatttgtacaaccactttgtga 167  Q
    |||||||||||||||||||||||||||||||    
46173550 gagaaatgatatttgtacaaccactttgtga 46173580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 170
Target Start/End: Complemental strand, 53091291 - 53091257
Alignment:
136 tgagaaatgatatttgtacaaccactttgtgataa 170  Q
    |||||||||||||||||||||||||||||| ||||    
53091291 tgagaaatgatatttgtacaaccactttgtaataa 53091257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 170
Target Start/End: Complemental strand, 5234531 - 5234498
Alignment:
137 gagaaatgatatttgtacaaccactttgtgataa 170  Q
    |||||||||||||||||||| |||||||||||||    
5234531 gagaaatgatatttgtacaatcactttgtgataa 5234498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 170
Target Start/End: Complemental strand, 31804400 - 31804367
Alignment:
137 gagaaatgatatttgtacaaccactttgtgataa 170  Q
    |||||||||||||||||||| |||||||||||||    
31804400 gagaaatgatatttgtacaatcactttgtgataa 31804367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 165
Target Start/End: Complemental strand, 51389146 - 51389117
Alignment:
136 tgagaaatgatatttgtacaaccactttgt 165  Q
    ||||||||||||||||||||||||||||||    
51389146 tgagaaatgatatttgtacaaccactttgt 51389117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 164
Target Start/End: Original strand, 44165908 - 44165936
Alignment:
136 tgagaaatgatatttgtacaaccactttg 164  Q
    |||||||||||||||||||||||||||||    
44165908 tgagaaatgatatttgtacaaccactttg 44165936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 170
Target Start/End: Complemental strand, 45548854 - 45548822
Alignment:
138 agaaatgatatttgtacaaccactttgtgataa 170  Q
    |||||||||||||||||||||| ||||||||||    
45548854 agaaatgatatttgtacaaccattttgtgataa 45548822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 136 - 170
Target Start/End: Complemental strand, 36581537 - 36581503
Alignment:
136 tgagaaatgatatttgtacaaccactttgtgataa 170  Q
    |||||||||||||||||||||||||||||||||||    
36581537 tgagaaatgatatttgtacaaccactttgtgataa 36581503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 167
Target Start/End: Original strand, 19127123 - 19127154
Alignment:
136 tgagaaatgatatttgtacaaccactttgtga 167  Q
    ||||||||||||||||||||||||||||||||    
19127123 tgagaaatgatatttgtacaaccactttgtga 19127154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 167
Target Start/End: Original strand, 34381011 - 34381042
Alignment:
136 tgagaaatgatatttgtacaaccactttgtga 167  Q
    ||||||||||||||||||||||||||||||||    
34381011 tgagaaatgatatttgtacaaccactttgtga 34381042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 167
Target Start/End: Original strand, 39595271 - 39595302
Alignment:
136 tgagaaatgatatttgtacaaccactttgtga 167  Q
    ||||||||||||||||||||||||||||||||    
39595271 tgagaaatgatatttgtacaaccactttgtga 39595302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 167
Target Start/End: Complemental strand, 6865847 - 6865817
Alignment:
137 gagaaatgatatttgtacaaccactttgtga 167  Q
    |||||||||||||||||||||||||||||||    
6865847 gagaaatgatatttgtacaaccactttgtga 6865817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 167
Target Start/End: Complemental strand, 23991205 - 23991175
Alignment:
137 gagaaatgatatttgtacaaccactttgtga 167  Q
    |||||||||||||||||||||||||||||||    
23991205 gagaaatgatatttgtacaaccactttgtga 23991175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 167
Target Start/End: Original strand, 28811429 - 28811459
Alignment:
137 gagaaatgatatttgtacaaccactttgtga 167  Q
    |||||||||||||||||||||||||||||||    
28811429 gagaaatgatatttgtacaaccactttgtga 28811459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 167
Target Start/End: Complemental strand, 36713249 - 36713219
Alignment:
137 gagaaatgatatttgtacaaccactttgtga 167  Q
    |||||||||||||||||||||||||||||||    
36713249 gagaaatgatatttgtacaaccactttgtga 36713219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 170
Target Start/End: Original strand, 35814453 - 35814486
Alignment:
137 gagaaatgatatttgtacaaccactttgtgataa 170  Q
    ||||||||||||||||||||||| ||||||||||    
35814453 gagaaatgatatttgtacaaccattttgtgataa 35814486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 167
Target Start/End: Original strand, 12910786 - 12910814
Alignment:
139 gaaatgatatttgtacaaccactttgtga 167  Q
    |||||||||||||||||||||||||||||    
12910786 gaaatgatatttgtacaaccactttgtga 12910814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 136 - 170
Target Start/End: Complemental strand, 31176512 - 31176478
Alignment:
136 tgagaaatgatatttgtacaaccactttgtgataa 170  Q
    |||||||||||||||||||||||||||||||||||    
31176512 tgagaaatgatatttgtacaaccactttgtgataa 31176478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 170
Target Start/End: Original strand, 9027873 - 9027906
Alignment:
137 gagaaatgatatttgtacaaccactttgtgataa 170  Q
    ||||||||||||||||||||||||||||||||||    
9027873 gagaaatgatatttgtacaaccactttgtgataa 9027906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 170
Target Start/End: Complemental strand, 43409433 - 43409400
Alignment:
137 gagaaatgatatttgtacaaccactttgtgataa 170  Q
    ||||||||||||||||||||||||||||||||||    
43409433 gagaaatgatatttgtacaaccactttgtgataa 43409400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 167
Target Start/End: Original strand, 14957835 - 14957866
Alignment:
136 tgagaaatgatatttgtacaaccactttgtga 167  Q
    ||||||||||||||||||||||||||||||||    
14957835 tgagaaatgatatttgtacaaccactttgtga 14957866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 167
Target Start/End: Complemental strand, 20380961 - 20380930
Alignment:
136 tgagaaatgatatttgtacaaccactttgtga 167  Q
    ||||||||||||||||||||||||||||||||    
20380961 tgagaaatgatatttgtacaaccactttgtga 20380930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 167
Target Start/End: Complemental strand, 51464344 - 51464313
Alignment:
136 tgagaaatgatatttgtacaaccactttgtga 167  Q
    ||||||||||||||||||||||||||||||||    
51464344 tgagaaatgatatttgtacaaccactttgtga 51464313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 167
Target Start/End: Original strand, 108431 - 108461
Alignment:
137 gagaaatgatatttgtacaaccactttgtga 167  Q
    |||||||||||||||||||||||||||||||    
108431 gagaaatgatatttgtacaaccactttgtga 108461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 167
Target Start/End: Complemental strand, 1901997 - 1901967
Alignment:
137 gagaaatgatatttgtacaaccactttgtga 167  Q
    |||||||||||||||||||||||||||||||    
1901997 gagaaatgatatttgtacaaccactttgtga 1901967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 167
Target Start/End: Complemental strand, 1911443 - 1911413
Alignment:
137 gagaaatgatatttgtacaaccactttgtga 167  Q
    |||||||||||||||||||||||||||||||    
1911443 gagaaatgatatttgtacaaccactttgtga 1911413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 167
Target Start/End: Original strand, 3483132 - 3483162
Alignment:
137 gagaaatgatatttgtacaaccactttgtga 167  Q
    |||||||||||||||||||||||||||||||    
3483132 gagaaatgatatttgtacaaccactttgtga 3483162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 167
Target Start/End: Original strand, 5398918 - 5398948
Alignment:
137 gagaaatgatatttgtacaaccactttgtga 167  Q
    |||||||||||||||||||||||||||||||    
5398918 gagaaatgatatttgtacaaccactttgtga 5398948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 167
Target Start/End: Original strand, 12792638 - 12792668
Alignment:
137 gagaaatgatatttgtacaaccactttgtga 167  Q
    |||||||||||||||||||||||||||||||    
12792638 gagaaatgatatttgtacaaccactttgtga 12792668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 170
Target Start/End: Original strand, 14207378 - 14207408
Alignment:
140 aaatgatatttgtacaaccactttgtgataa 170  Q
    |||||||||||||||||||||||||||||||    
14207378 aaatgatatttgtacaaccactttgtgataa 14207408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 170
Target Start/End: Original strand, 14215126 - 14215156
Alignment:
140 aaatgatatttgtacaaccactttgtgataa 170  Q
    |||||||||||||||||||||||||||||||    
14215126 aaatgatatttgtacaaccactttgtgataa 14215156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 167
Target Start/End: Original strand, 18169157 - 18169187
Alignment:
137 gagaaatgatatttgtacaaccactttgtga 167  Q
    |||||||||||||||||||||||||||||||    
18169157 gagaaatgatatttgtacaaccactttgtga 18169187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 167
Target Start/End: Original strand, 20215948 - 20215978
Alignment:
137 gagaaatgatatttgtacaaccactttgtga 167  Q
    |||||||||||||||||||||||||||||||    
20215948 gagaaatgatatttgtacaaccactttgtga 20215978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 167
Target Start/End: Complemental strand, 34607991 - 34607961
Alignment:
137 gagaaatgatatttgtacaaccactttgtga 167  Q
    |||||||||||||||||||||||||||||||    
34607991 gagaaatgatatttgtacaaccactttgtga 34607961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 167
Target Start/End: Original strand, 35272027 - 35272057
Alignment:
137 gagaaatgatatttgtacaaccactttgtga 167  Q
    |||||||||||||||||||||||||||||||    
35272027 gagaaatgatatttgtacaaccactttgtga 35272057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 167
Target Start/End: Complemental strand, 41877682 - 41877652
Alignment:
137 gagaaatgatatttgtacaaccactttgtga 167  Q
    |||||||||||||||||||||||||||||||    
41877682 gagaaatgatatttgtacaaccactttgtga 41877652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 167
Target Start/End: Original strand, 48945847 - 48945877
Alignment:
137 gagaaatgatatttgtacaaccactttgtga 167  Q
    |||||||||||||||||||||||||||||||    
48945847 gagaaatgatatttgtacaaccactttgtga 48945877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 170
Target Start/End: Complemental strand, 29800620 - 29800587
Alignment:
137 gagaaatgatatttgtacaaccactttgtgataa 170  Q
    ||||||||||||||||||||| ||||||||||||    
29800620 gagaaatgatatttgtacaactactttgtgataa 29800587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 170
Target Start/End: Complemental strand, 43499632 - 43499599
Alignment:
137 gagaaatgatatttgtacaaccactttgtgataa 170  Q
    ||||||||||||||||||||||||||| ||||||    
43499632 gagaaatgatatttgtacaaccactttatgataa 43499599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 170
Target Start/End: Original strand, 47849672 - 47849705
Alignment:
137 gagaaatgatatttgtacaaccactttgtgataa 170  Q
    ||||||||||||||||||||||| ||||||||||    
47849672 gagaaatgatatttgtacaaccattttgtgataa 47849705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 170
Target Start/End: Complemental strand, 55344367 - 55344334
Alignment:
137 gagaaatgatatttgtacaaccactttgtgataa 170  Q
    ||||||||||||||||||||||| ||||||||||    
55344367 gagaaatgatatttgtacaaccattttgtgataa 55344334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 165
Target Start/End: Complemental strand, 34271561 - 34271533
Alignment:
137 gagaaatgatatttgtacaaccactttgt 165  Q
    |||||||||||||||||||||||||||||    
34271561 gagaaatgatatttgtacaaccactttgt 34271533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 165
Target Start/End: Original strand, 43176202 - 43176230
Alignment:
137 gagaaatgatatttgtacaaccactttgt 165  Q
    |||||||||||||||||||||||||||||    
43176202 gagaaatgatatttgtacaaccactttgt 43176230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 164
Target Start/End: Complemental strand, 50294184 - 50294156
Alignment:
136 tgagaaatgatatttgtacaaccactttg 164  Q
    |||||||||||||||||||||||||||||    
50294184 tgagaaatgatatttgtacaaccactttg 50294156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 136 - 170
Target Start/End: Original strand, 12600047 - 12600081
Alignment:
136 tgagaaatgatatttgtacaaccactttgtgataa 170  Q
    |||||||||||||||||||||||||||||||||||    
12600047 tgagaaatgatatttgtacaaccactttgtgataa 12600081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 170
Target Start/End: Original strand, 13553147 - 13553180
Alignment:
137 gagaaatgatatttgtacaaccactttgtgataa 170  Q
    ||||||||||||||||||||||||||||||||||    
13553147 gagaaatgatatttgtacaaccactttgtgataa 13553180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 167
Target Start/End: Original strand, 30856806 - 30856837
Alignment:
136 tgagaaatgatatttgtacaaccactttgtga 167  Q
    ||||||||||||||||||||||||||||||||    
30856806 tgagaaatgatatttgtacaaccactttgtga 30856837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 167
Target Start/End: Complemental strand, 4738643 - 4738613
Alignment:
137 gagaaatgatatttgtacaaccactttgtga 167  Q
    |||||||||||||||||||||||||||||||    
4738643 gagaaatgatatttgtacaaccactttgtga 4738613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 167
Target Start/End: Complemental strand, 5167813 - 5167783
Alignment:
137 gagaaatgatatttgtacaaccactttgtga 167  Q
    |||||||||||||||||||||||||||||||    
5167813 gagaaatgatatttgtacaaccactttgtga 5167783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 167
Target Start/End: Original strand, 6365186 - 6365216
Alignment:
137 gagaaatgatatttgtacaaccactttgtga 167  Q
    |||||||||||||||||||||||||||||||    
6365186 gagaaatgatatttgtacaaccactttgtga 6365216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 167
Target Start/End: Complemental strand, 15283321 - 15283291
Alignment:
137 gagaaatgatatttgtacaaccactttgtga 167  Q
    |||||||||||||||||||||||||||||||    
15283321 gagaaatgatatttgtacaaccactttgtga 15283291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 167
Target Start/End: Complemental strand, 33296142 - 33296112
Alignment:
137 gagaaatgatatttgtacaaccactttgtga 167  Q
    |||||||||||||||||||||||||||||||    
33296142 gagaaatgatatttgtacaaccactttgtga 33296112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 167
Target Start/End: Original strand, 36132974 - 36133004
Alignment:
137 gagaaatgatatttgtacaaccactttgtga 167  Q
    |||||||||||||||||||||||||||||||    
36132974 gagaaatgatatttgtacaaccactttgtga 36133004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 167
Target Start/End: Original strand, 36435681 - 36435711
Alignment:
137 gagaaatgatatttgtacaaccactttgtga 167  Q
    |||||||||||||||||||||||||||||||    
36435681 gagaaatgatatttgtacaaccactttgtga 36435711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 167
Target Start/End: Original strand, 41040266 - 41040296
Alignment:
137 gagaaatgatatttgtacaaccactttgtga 167  Q
    |||||||||||||||||||||||||||||||    
41040266 gagaaatgatatttgtacaaccactttgtga 41040296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 167
Target Start/End: Complemental strand, 42283310 - 42283280
Alignment:
137 gagaaatgatatttgtacaaccactttgtga 167  Q
    |||||||||||||||||||||||||||||||    
42283310 gagaaatgatatttgtacaaccactttgtga 42283280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 170
Target Start/End: Original strand, 13711061 - 13711094
Alignment:
137 gagaaatgatatttgtacaaccactttgtgataa 170  Q
    ||||||||||||||||||||||||||| ||||||    
13711061 gagaaatgatatttgtacaaccactttttgataa 13711094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 170
Target Start/End: Original strand, 22966786 - 22966819
Alignment:
137 gagaaatgatatttgtacaaccactttgtgataa 170  Q
    ||||||||||||||||||||||||||| ||||||    
22966786 gagaaatgatatttgtacaaccactttttgataa 22966819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 170
Target Start/End: Original strand, 34442113 - 34442146
Alignment:
137 gagaaatgatatttgtacaaccactttgtgataa 170  Q
    ||||||||||||||||||||||||||| ||||||    
34442113 gagaaatgatatttgtacaaccactttatgataa 34442146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 170
Target Start/End: Complemental strand, 35792527 - 35792494
Alignment:
137 gagaaatgatatttgtacaaccactttgtgataa 170  Q
    ||||||||||||||||||||| ||||||||||||    
35792527 gagaaatgatatttgtacaacaactttgtgataa 35792494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 170
Target Start/End: Complemental strand, 39247534 - 39247501
Alignment:
137 gagaaatgatatttgtacaaccactttgtgataa 170  Q
    ||||||||||||||||||||||| ||||||||||    
39247534 gagaaatgatatttgtacaaccattttgtgataa 39247501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 170
Target Start/End: Complemental strand, 26321767 - 26321735
Alignment:
138 agaaatgatatttgtacaaccactttgtgataa 170  Q
    |||||||||||||||||||||| ||||||||||    
26321767 agaaatgatatttgtacaaccattttgtgataa 26321735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 170
Target Start/End: Complemental strand, 26321935 - 26321903
Alignment:
138 agaaatgatatttgtacaaccactttgtgataa 170  Q
    |||||||||||||||||||||| ||||||||||    
26321935 agaaatgatatttgtacaaccattttgtgataa 26321903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 170
Target Start/End: Complemental strand, 32725851 - 32725818
Alignment:
137 gagaaatgatatttgtacaaccactttgtgataa 170  Q
    ||||||||||||||||||||||||||||||||||    
32725851 gagaaatgatatttgtacaaccactttgtgataa 32725818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 170
Target Start/End: Original strand, 40842014 - 40842047
Alignment:
137 gagaaatgatatttgtacaaccactttgtgataa 170  Q
    ||||||||||||||||||||||||||||||||||    
40842014 gagaaatgatatttgtacaaccactttgtgataa 40842047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 167
Target Start/End: Original strand, 1796495 - 1796526
Alignment:
136 tgagaaatgatatttgtacaaccactttgtga 167  Q
    ||||||||||||||||||||||||||||||||    
1796495 tgagaaatgatatttgtacaaccactttgtga 1796526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 167
Target Start/End: Original strand, 5502371 - 5502401
Alignment:
137 gagaaatgatatttgtacaaccactttgtga 167  Q
    |||||||||||||||||||||||||||||||    
5502371 gagaaatgatatttgtacaaccactttgtga 5502401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 167
Target Start/End: Original strand, 8841030 - 8841060
Alignment:
137 gagaaatgatatttgtacaaccactttgtga 167  Q
    |||||||||||||||||||||||||||||||    
8841030 gagaaatgatatttgtacaaccactttgtga 8841060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 167
Target Start/End: Original strand, 12732842 - 12732872
Alignment:
137 gagaaatgatatttgtacaaccactttgtga 167  Q
    |||||||||||||||||||||||||||||||    
12732842 gagaaatgatatttgtacaaccactttgtga 12732872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 167
Target Start/End: Complemental strand, 22852910 - 22852880
Alignment:
137 gagaaatgatatttgtacaaccactttgtga 167  Q
    |||||||||||||||||||||||||||||||    
22852910 gagaaatgatatttgtacaaccactttgtga 22852880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 167
Target Start/End: Original strand, 28927681 - 28927711
Alignment:
137 gagaaatgatatttgtacaaccactttgtga 167  Q
    |||||||||||||||||||||||||||||||    
28927681 gagaaatgatatttgtacaaccactttgtga 28927711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 167
Target Start/End: Original strand, 45101396 - 45101426
Alignment:
137 gagaaatgatatttgtacaaccactttgtga 167  Q
    |||||||||||||||||||||||||||||||    
45101396 gagaaatgatatttgtacaaccactttgtga 45101426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 170
Target Start/End: Complemental strand, 69662 - 69629
Alignment:
137 gagaaatgatatttgtacaaccactttgtgataa 170  Q
    |||||||||||||||||||| |||||||||||||    
69662 gagaaatgatatttgtacaatcactttgtgataa 69629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 165
Target Start/End: Complemental strand, 1370346 - 1370317
Alignment:
136 tgagaaatgatatttgtacaaccactttgt 165  Q
    ||||||||||||||||||||||||||||||    
1370346 tgagaaatgatatttgtacaaccactttgt 1370317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 170
Target Start/End: Complemental strand, 39021514 - 39021481
Alignment:
137 gagaaatgatatttgtacaaccactttgtgataa 170  Q
    ||||||||||||||||||||||| ||||||||||    
39021514 gagaaatgatatttgtacaaccattttgtgataa 39021481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 170
Target Start/End: Complemental strand, 38023495 - 38023462
Alignment:
137 gagaaatgatatttgtacaaccactttgtgataa 170  Q
    ||||||||||||||||||||||||||||||||||    
38023495 gagaaatgatatttgtacaaccactttgtgataa 38023462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 170
Target Start/End: Complemental strand, 43079703 - 43079670
Alignment:
137 gagaaatgatatttgtacaaccactttgtgataa 170  Q
    ||||||||||||||||||||||||||||||||||    
43079703 gagaaatgatatttgtacaaccactttgtgataa 43079670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 167
Target Start/End: Original strand, 31982056 - 31982087
Alignment:
136 tgagaaatgatatttgtacaaccactttgtga 167  Q
    ||||||||||||||||||||||||||||||||    
31982056 tgagaaatgatatttgtacaaccactttgtga 31982087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 167
Target Start/End: Original strand, 2469703 - 2469733
Alignment:
137 gagaaatgatatttgtacaaccactttgtga 167  Q
    |||||||||||||||||||||||||||||||    
2469703 gagaaatgatatttgtacaaccactttgtga 2469733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 167
Target Start/End: Complemental strand, 22330691 - 22330661
Alignment:
137 gagaaatgatatttgtacaaccactttgtga 167  Q
    |||||||||||||||||||||||||||||||    
22330691 gagaaatgatatttgtacaaccactttgtga 22330661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 170
Target Start/End: Original strand, 29763829 - 29763863
Alignment:
136 tgagaaatgatatttgtacaaccactttgtgataa 170  Q
    |||||||||||||||||||||||| ||||||||||    
29763829 tgagaaatgatatttgtacaaccattttgtgataa 29763863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 167
Target Start/End: Complemental strand, 37352050 - 37352020
Alignment:
137 gagaaatgatatttgtacaaccactttgtga 167  Q
    |||||||||||||||||||||||||||||||    
37352050 gagaaatgatatttgtacaaccactttgtga 37352020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 167
Target Start/End: Original strand, 41966332 - 41966362
Alignment:
137 gagaaatgatatttgtacaaccactttgtga 167  Q
    |||||||||||||||||||||||||||||||    
41966332 gagaaatgatatttgtacaaccactttgtga 41966362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 170
Target Start/End: Complemental strand, 18157256 - 18157223
Alignment:
137 gagaaatgatatttgtacaaccactttgtgataa 170  Q
    |||| |||||||||||||||||||||||||||||    
18157256 gagacatgatatttgtacaaccactttgtgataa 18157223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 170
Target Start/End: Complemental strand, 42942450 - 42942417
Alignment:
137 gagaaatgatatttgtacaaccactttgtgataa 170  Q
    ||||||||||||||||||||||||||||| ||||    
42942450 gagaaatgatatttgtacaaccactttgtaataa 42942417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 170
Target Start/End: Original strand, 43025809 - 43025842
Alignment:
137 gagaaatgatatttgtacaaccactttgtgataa 170  Q
    ||||||||||||||||||||||||||| ||||||    
43025809 gagaaatgatatttgtacaaccactttttgataa 43025842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 167
Target Start/End: Original strand, 28596908 - 28596936
Alignment:
139 gaaatgatatttgtacaaccactttgtga 167  Q
    |||||||||||||||||||||||||||||    
28596908 gaaatgatatttgtacaaccactttgtga 28596936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 165
Target Start/End: Original strand, 30941178 - 30941206
Alignment:
137 gagaaatgatatttgtacaaccactttgt 165  Q
    |||||||||||||||||||||||||||||    
30941178 gagaaatgatatttgtacaaccactttgt 30941206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 170
Target Start/End: Complemental strand, 37173044 - 37173012
Alignment:
138 agaaatgatatttgtacaaccactttgtgataa 170  Q
    |||||||||||||||||||||| ||||||||||    
37173044 agaaatgatatttgtacaaccaatttgtgataa 37173012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 167
Target Start/End: Original strand, 113624 - 113655
Alignment:
136 tgagaaatgatatttgtacaaccactttgtga 167  Q
    ||||||||||||||||||||||||||||||||    
113624 tgagaaatgatatttgtacaaccactttgtga 113655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 167
Target Start/End: Complemental strand, 32457324 - 32457293
Alignment:
136 tgagaaatgatatttgtacaaccactttgtga 167  Q
    ||||||||||||||||||||||||||||||||    
32457324 tgagaaatgatatttgtacaaccactttgtga 32457293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 167
Target Start/End: Complemental strand, 30796146 - 30796116
Alignment:
137 gagaaatgatatttgtacaaccactttgtga 167  Q
    |||||||||||||||||||||||||||||||    
30796146 gagaaatgatatttgtacaaccactttgtga 30796116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 167
Target Start/End: Original strand, 6435037 - 6435066
Alignment:
138 agaaatgatatttgtacaaccactttgtga 167  Q
    ||||||||||||||||||||||||||||||    
6435037 agaaatgatatttgtacaaccactttgtga 6435066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 170
Target Start/End: Complemental strand, 8173383 - 8173350
Alignment:
137 gagaaatgatatttgtacaaccactttgtgataa 170  Q
    |||||||||||||||| |||||||||||||||||    
8173383 gagaaatgatatttgtgcaaccactttgtgataa 8173350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 170
Target Start/End: Original strand, 32253780 - 32253813
Alignment:
137 gagaaatgatatttgtacaaccactttgtgataa 170  Q
    ||||||||||||||||||||||||||| ||||||    
32253780 gagaaatgatatttgtacaaccactttttgataa 32253813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 167
Target Start/End: Complemental strand, 5309112 - 5309081
Alignment:
136 tgagaaatgatatttgtacaaccactttgtga 167  Q
    ||||||||||||||||||||||||||||||||    
5309112 tgagaaatgatatttgtacaaccactttgtga 5309081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 167
Target Start/End: Original strand, 32821634 - 32821665
Alignment:
136 tgagaaatgatatttgtacaaccactttgtga 167  Q
    ||||||||||||||||||||||||||||||||    
32821634 tgagaaatgatatttgtacaaccactttgtga 32821665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 167
Target Start/End: Complemental strand, 25302714 - 25302684
Alignment:
137 gagaaatgatatttgtacaaccactttgtga 167  Q
    |||||||||||||||||||||||||||||||    
25302714 gagaaatgatatttgtacaaccactttgtga 25302684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 167
Target Start/End: Complemental strand, 31428028 - 31427998
Alignment:
137 gagaaatgatatttgtacaaccactttgtga 167  Q
    |||||||||||||||||||||||||||||||    
31428028 gagaaatgatatttgtacaaccactttgtga 31427998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 170
Target Start/End: Original strand, 45333355 - 45333389
Alignment:
136 tgagaaatgatatttgtacaaccactttgtgataa 170  Q
    |||||||||||||||||||||||||||| ||||||    
45333355 tgagaaatgatatttgtacaaccactttttgataa 45333389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 167
Target Start/End: Complemental strand, 45740615 - 45740585
Alignment:
137 gagaaatgatatttgtacaaccactttgtga 167  Q
    |||||||||||||||||||||||||||||||    
45740615 gagaaatgatatttgtacaaccactttgtga 45740585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 167
Target Start/End: Original strand, 49425738 - 49425768
Alignment:
137 gagaaatgatatttgtacaaccactttgtga 167  Q
    |||||||||||||||||||||||||||||||    
49425738 gagaaatgatatttgtacaaccactttgtga 49425768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 167
Target Start/End: Original strand, 49453491 - 49453521
Alignment:
137 gagaaatgatatttgtacaaccactttgtga 167  Q
    |||||||||||||||||||||||||||||||    
49453491 gagaaatgatatttgtacaaccactttgtga 49453521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 167
Target Start/End: Complemental strand, 50226950 - 50226920
Alignment:
137 gagaaatgatatttgtacaaccactttgtga 167  Q
    |||||||||||||||||||||||||||||||    
50226950 gagaaatgatatttgtacaaccactttgtga 50226920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 170
Target Start/End: Original strand, 586899 - 586932
Alignment:
137 gagaaatgatatttgtacaaccactttgtgataa 170  Q
    |||||||||||||||||||| |||||||||||||    
586899 gagaaatgatatttgtacaatcactttgtgataa 586932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 165
Target Start/End: Complemental strand, 25098860 - 25098831
Alignment:
136 tgagaaatgatatttgtacaaccactttgt 165  Q
    ||||||||||||||||||||||||||||||    
25098860 tgagaaatgatatttgtacaaccactttgt 25098831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 170
Target Start/End: Original strand, 27352630 - 27352663
Alignment:
137 gagaaatgatatttgtacaaccactttgtgataa 170  Q
    ||||||||||||||||||||||| ||||||||||    
27352630 gagaaatgatatttgtacaaccattttgtgataa 27352663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 170
Target Start/End: Complemental strand, 29489430 - 29489397
Alignment:
137 gagaaatgatatttgtacaaccactttgtgataa 170  Q
    ||||||||||||||||||||||| ||||||||||    
29489430 gagaaatgatatttgtacaaccattttgtgataa 29489397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 167
Target Start/End: Original strand, 32966268 - 32966297
Alignment:
138 agaaatgatatttgtacaaccactttgtga 167  Q
    ||||||||||||||||||||||||||||||    
32966268 agaaatgatatttgtacaaccactttgtga 32966297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 170
Target Start/End: Complemental strand, 1523364 - 1523332
Alignment:
138 agaaatgatatttgtacaaccactttgtgataa 170  Q
    |||||||||||||||||||||||||| ||||||    
1523364 agaaatgatatttgtacaaccactttttgataa 1523332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 170
Target Start/End: Original strand, 18594 - 18628
Alignment:
136 tgagaaatgatatttgtacaaccactttgtgataa 170  Q
    |||||||||||||||||||||||| ||||||||||    
18594 tgagaaatgatatttgtacaaccaatttgtgataa 18628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 167
Target Start/End: Complemental strand, 219735 - 219705
Alignment:
137 gagaaatgatatttgtacaaccactttgtga 167  Q
    |||||||||||||||||||||||||||||||    
219735 gagaaatgatatttgtacaaccactttgtga 219705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0330 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 170
Target Start/End: Original strand, 4041 - 4074
Alignment:
137 gagaaatgatatttgtacaaccactttgtgataa 170  Q
    ||||||||||||||||||||||| ||||||||||    
4041 gagaaatgatatttgtacaaccattttgtgataa 4074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0131 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 167
Target Start/End: Complemental strand, 15604 - 15575
Alignment:
138 agaaatgatatttgtacaaccactttgtga 167  Q
    ||||||||||||||||||||||||||||||    
15604 agaaatgatatttgtacaaccactttgtga 15575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 170
Target Start/End: Original strand, 36002 - 36035
Alignment:
137 gagaaatgatatttgtacaaccactttgtgataa 170  Q
    ||||||||||||||||||||| ||||||||||||    
36002 gagaaatgatatttgtacaactactttgtgataa 36035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 170
Target Start/End: Original strand, 88808 - 88841
Alignment:
137 gagaaatgatatttgtacaaccactttgtgataa 170  Q
    ||||||||||||||||||||||| ||||||||||    
88808 gagaaatgatatttgtacaaccaatttgtgataa 88841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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