View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21319_low_44 (Length: 236)
Name: NF21319_low_44
Description: NF21319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21319_low_44 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 177; Significance: 2e-95; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 14172848 - 14172628
Alignment:
| Q |
1 |
tcattaatttgttagtaaaaatgtgcacactgttaatnnnnnnngaatagggttaattacatgtcatatat--tttttgtttgtgcaatttccttcaatc |
98 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
14172848 |
tcattaatctgttagtaaaaatgtgcacactgttaataaaaaaagaataggtttaattacatgtcatatatattttttgtttgttcaatttccttcaatc |
14172749 |
T |
|
| Q |
99 |
tcaaattttcttacacaagatggagtctttccaattagccaatgaatcttctcccctttccttaactcctaattttatcctcccagaacacaaaagacca |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14172748 |
tcaaattttcttacacaagatggagtctttccaattagccaatgaatcttctcccctttccttaactcctaattttatcctcccagaacacaaaagacca |
14172649 |
T |
|
| Q |
199 |
cacctttcagaggttaaatat |
219 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
14172648 |
cacctttcagaggttaaatat |
14172628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 74 - 214
Target Start/End: Complemental strand, 14176225 - 14176084
Alignment:
| Q |
74 |
tttgtttgtgcaatttccttcaatctc-aaattttcttacacaagatggagtctttccaattagccaatgaatcttctcccctttccttaactcctaatt |
172 |
Q |
| |
|
||||||||| || || ||||||||||| |||||||| ||||||||||| |||||||||||||||||||||| |||||||| ||||||||||||| ||| |
|
|
| T |
14176225 |
tttgtttgttcagttcccttcaatctccaaattttcctacacaagatgaagtctttccaattagccaatgagtcttctccactttccttaactcaagatt |
14176126 |
T |
|
| Q |
173 |
ttatcctcccagaacacaaaagaccacacctttcagaggtta |
214 |
Q |
| |
|
||||||| ||| ||||||||||||||| |||||||||||||| |
|
|
| T |
14176125 |
ttatccttccaaaacacaaaagaccacgcctttcagaggtta |
14176084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 91 - 214
Target Start/End: Complemental strand, 14180190 - 14180069
Alignment:
| Q |
91 |
cttcaatctcaaattttcttacacaagatggagtctttccaattagccaatgaatcttctcccctttccttaactcctaattttatcctcccagaacaca |
190 |
Q |
| |
|
||||| ||||||||||||||||| ||||| | ||||||||||| |||||||| |||||||| ||||||||||||| ||||||||||||||||||||| |
|
|
| T |
14180190 |
cttcattctcaaattttcttaca--agatgaaatctttccaatttgccaatgagtcttctccagtttccttaactccagattttatcctcccagaacaca |
14180093 |
T |
|
| Q |
191 |
aaagaccacacctttcagaggtta |
214 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
14180092 |
aaagaccacacctttcagaggtta |
14180069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University