View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21319_low_5 (Length: 566)
Name: NF21319_low_5
Description: NF21319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21319_low_5 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 355; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 165 - 566
Target Start/End: Complemental strand, 37597905 - 37597499
Alignment:
| Q |
165 |
tattgtttctaatatttatgtttaatttcatatgtaatatttcannnnnnnncttt-----actcataggtaaatactatttcattatgcataaataatc |
259 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
37597905 |
tattgtttctaatatttatgtttaatttcatatgtaatatttcattttttttctttcctttactcataggtaagtactatttcattatgcataaataatc |
37597806 |
T |
|
| Q |
260 |
atgtgaagaaaatgttaccagcaatatcacaaaattcattgtgtaggtgctactactatcataggtaggtattgttttgttatgcatatatataaatgta |
359 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37597805 |
atgtgaagaaaatgttaccagcaatatcacaaaattcattgtgtaggtgctactactatcataggtaggtattgttttgttatgcatatatataaatgta |
37597706 |
T |
|
| Q |
360 |
ctatttcacaaaattccaacaactaacaaagcaggtcaattcatgttgtacttaaaacatgtgaagaagagcattggttgttaccagcactgtcatagga |
459 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
37597705 |
ctatttcacaaaattccaacaactaacaaagcaggtcaattcatgttgtacttaaaacatgtgaagaagagcattggttgttaccagcactgacatagga |
37597606 |
T |
|
| Q |
460 |
gggtattcaacctttgtaatttgacatatgtatgtgtcagcttattgttgaagttaaccacttgaacatgttccaactcaatgaactcatcctttgatca |
559 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37597605 |
gggtattcaacctttgtaatttgacatatgtatgtgtcagcttattgttgaagttaaccacttgaacatgttccaactcaatgaactcatcctttgatca |
37597506 |
T |
|
| Q |
560 |
ttcattg |
566 |
Q |
| |
|
||||||| |
|
|
| T |
37597505 |
ttcattg |
37597499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 17 - 167
Target Start/End: Complemental strand, 37598087 - 37597928
Alignment:
| Q |
17 |
actttttgaaggattgactgattccactggtccttgtatttaattttgctgatg---gtagatgcaatatggaaagagactcctaacgcactg------a |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |
|
|
| T |
37598087 |
actttttgaaggattgactgattccactggtccttgtatttaattttgctgatggtagtagatgcaatatggaaagagactcctaacgcactgatatata |
37597988 |
T |
|
| Q |
108 |
tatgcactagaaatatcgttacagttttgatgggccatacctgcctcactaatgtaatat |
167 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37597987 |
tatgcactagaaatatcgtaacagttttgatgggccatacctgcctcactaatgtaatat |
37597928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University