View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21319_low_6 (Length: 529)
Name: NF21319_low_6
Description: NF21319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21319_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 28 - 373
Target Start/End: Complemental strand, 29336976 - 29336630
Alignment:
| Q |
28 |
ttataatcactagattttcatcatctcattcatgctctagttttgcaccaccaccaaactatattttgctctctaaaccaacacatgtgagatttccttt |
127 |
Q |
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| T |
29336976 |
ttataatcactagattttcatcatctcattcatgctctagttttgcacccgcaccaaactatattttgctctctaaaccaacacatgtgagatttccttt |
29336877 |
T |
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| Q |
128 |
ccacctagaatttgcaatgaagaaactgaacatgtatgtgcatgcaatattcnnnnnnnn-agtcttaaccttctcgttctcagaggaacgagtcctgat |
226 |
Q |
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| T |
29336876 |
ccacctagaatttgcaatgaagaaactgaacatgtatgtgcatgcaatattctttttttttagtcttaaccttctcgttctcagaggaacgagtcctgat |
29336777 |
T |
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| Q |
227 |
aatccccacttcgatcggaatttaagttaagcctgaccaatggttgttaccgccatggtttgaattcggttactccggattgattagactgttattgaaa |
326 |
Q |
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| T |
29336776 |
aatccccagtttgatcgaaatttaagttaagcctgaccaatggttgttaccgccatggtttgaattcggctactccgggttgattagaccgttattgaaa |
29336677 |
T |
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| Q |
327 |
attattaactacttaagtcaaatcatttggctatgaagatactatta |
373 |
Q |
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| T |
29336676 |
attattaactacttaagtcaaatcacttggctatgaagatactatta |
29336630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 406 - 523
Target Start/End: Complemental strand, 29336597 - 29336480
Alignment:
| Q |
406 |
gtactgtcatggttgttagctaattcactttatctaccatcagtctcacaagttatttagttcttggaattcaataatttaagatannnnnnnncattta |
505 |
Q |
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||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
29336597 |
gtactgtcatggttgttagctaactcactttatctaccatcaatctcacaagttatttagttcttggaattcaataatttaagatattttttttcattta |
29336498 |
T |
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| Q |
506 |
tactagagattcatttca |
523 |
Q |
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| T |
29336497 |
tactagagattcatttca |
29336480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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