View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21319_low_8 (Length: 477)

Name: NF21319_low_8
Description: NF21319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21319_low_8
NF21319_low_8
[»] chr2 (11 HSPs)
chr2 (10-472)||(40894711-40895170)
chr2 (252-375)||(31620525-31620648)
chr2 (252-405)||(35306017-35306170)
chr2 (251-402)||(35298555-35298706)
chr2 (252-445)||(36669023-36669216)
chr2 (252-356)||(31622062-31622166)
chr2 (275-375)||(36666225-36666325)
chr2 (252-341)||(4753528-4753617)
chr2 (255-313)||(4755036-4755094)
chr2 (252-313)||(31621112-31621173)
chr2 (264-313)||(36666795-36666844)
[»] chr3 (11 HSPs)
chr3 (252-472)||(37464829-37465049)
chr3 (252-375)||(11137912-11138035)
chr3 (250-337)||(19801784-19801871)
chr3 (273-387)||(37463700-37463814)
chr3 (251-400)||(18912547-18912696)
chr3 (249-377)||(9099557-9099685)
chr3 (252-333)||(20997633-20997714)
chr3 (252-378)||(18939788-18939915)
chr3 (250-297)||(36163381-36163428)
chr3 (250-331)||(20998993-20999074)
chr3 (252-297)||(36164592-36164637)
[»] chr7 (10 HSPs)
chr7 (254-441)||(42537718-42537905)
chr7 (252-431)||(45291835-45292014)
chr7 (252-431)||(45295960-45296139)
chr7 (253-415)||(40601718-40601882)
chr7 (252-368)||(38516620-38516736)
chr7 (261-391)||(41740948-41741080)
chr7 (252-415)||(40600711-40600876)
chr7 (252-340)||(41739622-41739710)
chr7 (252-318)||(38517746-38517812)
chr7 (325-402)||(33061630-33061707)
[»] chr4 (10 HSPs)
chr4 (255-399)||(8480862-8481006)
chr4 (252-400)||(41774644-41774792)
chr4 (252-340)||(30829927-30830015)
chr4 (261-445)||(8479660-8479845)
chr4 (252-393)||(52190289-52190430)
chr4 (252-356)||(52189186-52189290)
chr4 (252-391)||(31410533-31410671)
chr4 (252-402)||(41780164-41780314)
chr4 (265-440)||(31409326-31409498)
chr4 (256-368)||(23545294-23545406)
[»] scaffold0115 (4 HSPs)
scaffold0115 (252-445)||(4336-4529)
scaffold0115 (252-445)||(12076-12269)
scaffold0115 (252-399)||(5994-6141)
scaffold0115 (252-399)||(13734-13881)
[»] chr6 (8 HSPs)
chr6 (252-431)||(9448648-9448827)
chr6 (252-415)||(227121-227285)
chr6 (252-415)||(226121-226284)
chr6 (251-341)||(18191745-18191835)
chr6 (252-297)||(11020404-11020449)
chr6 (253-297)||(11020178-11020222)
chr6 (252-296)||(18193022-18193066)
chr6 (249-297)||(31855648-31855696)
[»] chr1 (10 HSPs)
chr1 (249-402)||(49919612-49919765)
chr1 (252-446)||(26529508-26529701)
chr1 (251-376)||(26531027-26531152)
chr1 (252-445)||(36573962-36574155)
chr1 (252-375)||(36575475-36575598)
chr1 (252-313)||(36574956-36575017)
chr1 (252-368)||(35062564-35062680)
chr1 (252-339)||(35063596-35063683)
chr1 (252-313)||(26530502-26530563)
chr1 (252-334)||(49917389-49917470)
[»] chr5 (4 HSPs)
chr5 (253-445)||(16727813-16728005)
chr5 (251-340)||(38921454-38921543)
chr5 (255-368)||(35967351-35967464)
chr5 (252-339)||(35968670-35968757)
[»] chr8 (11 HSPs)
chr8 (252-415)||(5005708-5005871)
chr8 (251-402)||(5014735-5014886)
chr8 (253-375)||(3872224-3872346)
chr8 (251-356)||(17863465-17863570)
chr8 (252-313)||(12887725-12887786)
chr8 (252-337)||(37241028-37241113)
chr8 (252-356)||(17864672-17864776)
chr8 (252-375)||(3870768-3870891)
chr8 (252-341)||(32565606-32565695)
chr8 (252-305)||(12888252-12888305)
chr8 (250-290)||(12887022-12887062)


Alignment Details
Target: chr2 (Bit Score: 393; Significance: 0; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 10 - 472
Target Start/End: Complemental strand, 40895170 - 40894711
Alignment:
Q  10 tcatatttgtcacattcattcattttacacatgatttattcttatattgggttaatgaatgaannnnnnngctttgccaaagtcttaatttcttcttaac 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||| |||||||||||||||||||||||||    
T  40895170 tcatatttgtcacattcattcattttacacatgatttattcttatattgggttaatgaat----ttttttgcttagccaaagtcttaatttcttcttaac 40895075  T
Q  110 gataacatccactcgcttcaatggtaagtggtaacatttgcttctttccacctattattatgcatcagtcatacttagtattaagaacaaccgctatatt 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  40895074 gataacatccactcgcttcaatggtaagtggtaacatttgcttctttccacctattattatgcatcagtcatacttagtattaagaacaaccgctagatt 40894975  T
Q  210 tatgctatgagagttctcaaaaaggcttagcatccattctttgagtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctgga 309  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||    
T  40894974 tatgctatgagagttctcaaaaaggcttagcatccattctttgagtaaaccctcatttggatccctaaaagtgtacctcgctatcaggtacgtccctgga 40894875  T
Q  310 tcaatgaaacgaactaaaaactcccccaatgtcttttccgttagtcattcacgtccaaagcgttaactgggcgttaactgtgctaatctggccgctagac 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  40894874 tcaatgaaacgaactaaaaactcccccaatgtcttttccgttagtcattcacgtccaaaacgttaactgggcgttaactatgctaatctggccgctagac 40894775  T
Q  410 ttgccacttcagttgctgtattggccttccacgtaggcaaatgactaaattgat-gatgtccat 472  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  40894774 ttgccacttcagttgctgtattggccttccacgtaggcaaatgactaaattgatggatgtccat 40894711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 252 - 375
Target Start/End: Original strand, 31620525 - 31620648
Alignment:
Q  252 gagtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacgaactaaaaactcccccaatgtcttttccgtt 351  Q
    |||||||| ||||||||  |||||||||||||||||||||||||||||||||| || |||||  |||||||| |||||||| | |||||||| |||||||    
T  31620525 gagtaaaccctcatttgagtccctgaaagtgtacctcgctatcagatacgtccttgaatcaagaaaacgaaccaaaaactcgctcaatgtctgttccgtt 31620624  T
Q  352 agtcattcacgtccaaagcgttaa 375  Q
    |||||| || ||||||| ||||||    
T  31620625 agtcatacaagtccaaaacgttaa 31620648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 252 - 405
Target Start/End: Complemental strand, 35306170 - 35306017
Alignment:
Q  252 gagtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacgaactaaaaactcccccaatgtcttttccgtt 351  Q
    |||||||| ||||||| | ||||||||||||||||||||||||| | | ||||||| |||||  |||||||  ||||||||||| || |||| ||| |||    
T  35306170 gagtaaaccctcatttaggtccctgaaagtgtacctcgctatcaaacatgtccctgaatcaagaaaacgaaaaaaaaactccccgaaagtctcttctgtt 35306071  T
Q  352 agtcattcacgtccaaagcgttaactgggcgttaactgtgctaatctggccgct 405  Q
    |||||||| | |||||| ||||||||| ||||||||  |||| |||||| ||||    
T  35306070 agtcattctcatccaaaacgttaactgagcgttaacattgctgatctggacgct 35306017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 251 - 402
Target Start/End: Original strand, 35298555 - 35298706
Alignment:
Q  251 tgagtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacgaactaaaaactcccccaatgtcttttccgt 350  Q
    ||||||||| ||||||||| | |||||||||||||||||||||||   ||||||||| |||||  ||||| |  ||||||||||| || |||| || |||    
T  35298555 tgagtaaaccctcatttgggttcctgaaagtgtacctcgctatcaaccacgtccctgaatcaagaaaacgcaaaaaaaactccccgaaagtctctttcgt 35298654  T
Q  351 tagtcattcacgtccaaagcgttaactgggcgttaactgtgctaatctggcc 402  Q
    ||||||||| | |||||| ||||||||| ||||||||  |||| ||||||||    
T  35298655 tagtcattcccatccaaaacgttaactgagcgttaacattgctgatctggcc 35298706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 252 - 445
Target Start/End: Complemental strand, 36669216 - 36669023
Alignment:
Q  252 gagtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacgaactaaaaactcccccaatgtcttttccgtt 351  Q
    |||||||| || |||||||||| |||||||| |||||||||||||  ||||||||| |||||  |||| |||||||||||||| |||||||| ||| |||    
T  36669216 gagtaaaccctaatttggatccatgaaagtgcacctcgctatcagccacgtccctgaatcaagaaaacaaactaaaaactccctcaatgtctgttctgtt 36669117  T
Q  352 agtcattcacgtccaaagcgttaactgggcgttaactgtgctaatctggccgctagacttgccacttcagttgctgtattggccttccacgtag 445  Q
    |||||    | |||||| |||||||| |   ||||| ||| | || ||  || || || ||||||||||| |||||||||||| ||||| ||||    
T  36669116 agtcaaatgcatccaaaacgttaacttgatattaacggtgatgatgtgttcgttacacatgccacttcagctgctgtattggctttccatgtag 36669023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 252 - 356
Target Start/End: Complemental strand, 31622166 - 31622062
Alignment:
Q  252 gagtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacgaactaaaaactcccccaatgtcttttccgtt 351  Q
    |||||||| || |||||| ||||||||||||||||||| |||||   ||||||||| |||||  |||| |||||||||||||| |||||| | |||||||    
T  31622166 gagtaaacccttatttgggtccctgaaagtgtacctcgttatcaaccacgtccctgaatcaagaaaacaaactaaaaactccctcaatgtttgttccgtt 31622067  T
Q  352 agtca 356  Q
     ||||    
T  31622066 tgtca 31622062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 275 - 375
Target Start/End: Original strand, 36666225 - 36666325
Alignment:
Q  275 tgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacgaactaaaaactcccccaatgtcttttccgttagtcattcacgtccaaagcgtta 374  Q
    |||||||||||||||| || ||| || |  ||| |||||  |||||||||||||||| || |||||||| ||||||||||||| ||||| |||| |||||    
T  36666225 tgaaagtgtacctcgcaattagacacatttctgaatcaagaaaacgaactaaaaacttcctcaatgtctgttccgttagtcatacacgttcaaaacgtta 36666324  T
Q  375 a 375  Q
    |    
T  36666325 a 36666325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 252 - 341
Target Start/End: Original strand, 4753528 - 4753617
Alignment:
Q  252 gagtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacgaactaaaaactcccccaatgt 341  Q
    |||||||| ||| ||||| |||||||||||||  ||||||||||||   |||||||||||||| ||| |||  |||||||||| ||||||    
T  4753528 gagtaaaccctcgtttgggtccctgaaagtgtctctcgctatcagaccagtccctggatcaattaaatgaatcaaaaactccctcaatgt 4753617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 255 - 313
Target Start/End: Complemental strand, 4755094 - 4755036
Alignment:
Q  255 taaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaa 313  Q
    ||||| ||||||||| || |||||||||| ||||||||||||| |||||||| ||||||    
T  4755094 taaaccctcatttgggtctctgaaagtgtccctcgctatcagacacgtccctagatcaa 4755036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 252 - 313
Target Start/End: Complemental strand, 31621173 - 31621112
Alignment:
Q  252 gagtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaa 313  Q
    ||||||||  |||||||| ||||| ||||||||||||||||||| | | |||||||||||||    
T  31621173 gagtaaaccttcatttgggtccctaaaagtgtacctcgctatcaaacatgtccctggatcaa 31621112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 264 - 313
Target Start/End: Complemental strand, 36666844 - 36666795
Alignment:
Q  264 atttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaa 313  Q
    |||||| ||||| ||||||||||||||||||| ||| |||||||||||||    
T  36666844 atttgggtccctaaaagtgtacctcgctatcaaatatgtccctggatcaa 36666795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 106; Significance: 7e-53; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 252 - 472
Target Start/End: Complemental strand, 37465049 - 37464829
Alignment:
Q  252 gagtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacgaactaaaaactcccccaatgtcttttccgtt 351  Q
    |||||||| || |||||| |||||||||||||  ||||||||||| ||| ||||| |||||||||||| ||| ||||||||||  ||||||| |||||||    
T  37465049 gagtaaaccctaatttgggtccctgaaagtgttgctcgctatcaggtacatccctagatcaatgaaacaaaccaaaaactccctgaatgtctcttccgtt 37464950  T
Q  352 agtcattcacgtccaaagcgttaactgggcgttaactgtgctaatctggccgctagacttgccacttcagttgctgtattggccttccacgtaggcaaat 451  Q
     |||||||||||||||| |||||||||  |||||| |||| | ||||||| |||||||||||||||||||||||||||||||| ||||||  | |||||     
T  37464949 tgtcattcacgtccaaaacgttaactgaacgttaattgtgttgatctggctgctagacttgccacttcagttgctgtattggcattccacacatgcaaa- 37464851  T
Q  452 gactaaattgat-gatgtccat 472  Q
    |||||||||||| |||||||||    
T  37464850 gactaaattgatggatgtccat 37464829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 252 - 375
Target Start/End: Original strand, 11137912 - 11138035
Alignment:
Q  252 gagtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacgaactaaaaactcccccaatgtcttttccgtt 351  Q
    |||||||| ||||||||| || || ||| ||||||||||||||||| || |||||||||||   |||||||| |||||||||| |||||||| || | ||    
T  11137912 gagtaaaccctcatttggttctctaaaaatgtacctcgctatcagacacatccctggatcatgaaaacgaaccaaaaactccctcaatgtctgtttcttt 11138011  T
Q  352 agtcattcacgtccaaagcgttaa 375  Q
    ||| || |||||||||| ||||||    
T  11138012 agttatacacgtccaaaacgttaa 11138035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 250 - 337
Target Start/End: Original strand, 19801784 - 19801871
Alignment:
Q  250 ttgagtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacgaactaaaaactccccca 337  Q
    |||||||||| ||||||  | |||||||||||||||||||||||||| ||||||| | ||||||| |||||||| |||||||||||||    
T  19801784 ttgagtaaaccctcattccggtccctgaaagtgtacctcgctatcagctacgtccttagatcaattaaacgaaccaaaaactccccca 19801871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 273 - 387
Target Start/End: Original strand, 37463700 - 37463814
Alignment:
Q  273 cctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacgaactaaaaactcccccaatgtcttttccgttagtcattcacgtccaaagcgt 372  Q
    |||||||||||  ||||||||||   ||||||||||||||||||||||| | ||||||||  | ||||||| |||| ||||||||| ||||||||| |||    
T  37463700 cctgaaagtgtttctcgctatcaagcacgtccctggatcaatgaaacgatccaaaaactcatctaatgtctcttccattagtcatttacgtccaaaacgt 37463799  T
Q  373 taactgggcgttaac 387  Q
    ||||| || ||||||    
T  37463800 taacttggtgttaac 37463814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 251 - 400
Target Start/End: Original strand, 18912547 - 18912696
Alignment:
Q  251 tgagtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacgaactaaaaactcccccaatgtcttttccgt 350  Q
    ||||||||| ||||||||| |||||||||||||||||| |||| |   | ||||||| |||||  ||||| |  ||||||||||  || |||| ||||||    
T  18912547 tgagtaaaccctcatttgggtccctgaaagtgtacctcactattaaccatgtccctgaatcaagaaaacgcaaaaaaaactccctgaaagtctcttccgt 18912646  T
Q  351 tagtcattcacgtccaaagcgttaactgggcgttaactgtgctaatctgg 400  Q
    ||||||||| | |||||| ||||||||| ||||||||  |||| ||||||    
T  18912647 tagtcattcccatccaaaacgttaactgagcgttaacactgctgatctgg 18912696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 249 - 377
Target Start/End: Original strand, 9099557 - 9099685
Alignment:
Q  249 tttgagtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacgaactaaaaactcccccaatgtcttttcc 348  Q
    ||||||||||| ||||||||| ||||| |||||||||||||||||||   || |||||| ||||||||||||||| ||||||||   ||||||   ||||    
T  9099557 tttgagtaaaccctcatttgggtcccttaaagtgtacctcgctatcaagcacatccctgaatcaatgaaacgaaccaaaaactctttcaatgttggttcc 9099656  T
Q  349 gttagtcattcacgtccaaagcgttaact 377  Q
    ||||||||   | ||||||| ||||||||    
T  9099657 gttagtcaaataagtccaaaacgttaact 9099685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 252 - 333
Target Start/End: Original strand, 20997633 - 20997714
Alignment:
Q  252 gagtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacgaactaaaaactcc 333  Q
    |||||||| ||||||||| ||||||||| |||||||||||||||   || |||| |||||||| |||| ||| |||||||||    
T  20997633 gagtaaaccctcatttgggtccctgaaaatgtacctcgctatcaagcacatcccaggatcaataaaacaaaccaaaaactcc 20997714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 252 - 378
Target Start/End: Complemental strand, 18939915 - 18939788
Alignment:
Q  252 gagtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacgaactaaaaactcccccaatgtcttttccgtt 351  Q
    |||||||| ||||||||| ||||||||||||||| |||||||||   ||||||||   ||||  ||||| |  | ||||||||| || |||| |||||||    
T  18939915 gagtaaaccctcatttgggtccctgaaagtgtacttcgctatcaaccacgtccctaagtcaagaaaacgcaaaacaaactccccgaaagtctcttccgtt 18939816  T
Q  352 agtcatt-cacgtccaaagcgttaactg 378  Q
    ||||||| | | |||||| |||||||||    
T  18939815 agtcattacccatccaaaacgttaactg 18939788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 250 - 297
Target Start/End: Original strand, 36163381 - 36163428
Alignment:
Q  250 ttgagtaaactctcatttggatccctgaaagtgtacctcgctatcaga 297  Q
    ||||||||||  |||||||||||||||||||||| |||||||||||||    
T  36163381 ttgagtaaaccttcatttggatccctgaaagtgtccctcgctatcaga 36163428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 250 - 331
Target Start/End: Complemental strand, 20999074 - 20998993
Alignment:
Q  250 ttgagtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacgaactaaaaact 331  Q
    |||||||||  ||||||| ||||||||||||||||| | | ||||||| || || ||| |||||||||| ||| ||||||||    
T  20999074 ttgagtaaatcctcatttagatccctgaaagtgtacattgttatcagacacatcactgaatcaatgaaatgaattaaaaact 20998993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 252 - 297
Target Start/End: Complemental strand, 36164637 - 36164592
Alignment:
Q  252 gagtaaactctcatttggatccctgaaagtgtacctcgctatcaga 297  Q
    |||||||| ||||||||| ||||||||||||| |||||||||||||    
T  36164637 gagtaaaccctcatttgggtccctgaaagtgtccctcgctatcaga 36164592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 100; Significance: 3e-49; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 254 - 441
Target Start/End: Original strand, 42537718 - 42537905
Alignment:
Q  254 gtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacgaactaaaaactcccccaatgtcttttccgttag 353  Q
    |||||| |||| |||| |||||||||||||  ||||||||||| ||| |||||| ||||||||||||||| ||||||||||| ||||||| ||||||| |    
T  42537718 gtaaaccctcagttgggtccctgaaagtgttgctcgctatcaggtacatccctgaatcaatgaaacgaaccaaaaactccccgaatgtctcttccgtttg 42537817  T
Q  354 tcattcacgtccaaagcgttaactgggcgttaactgtgctaatctggccgctagacttgccacttcagttgctgtattggccttccac 441  Q
    ||||||||||||||| |||||| ||  |||||| |||| | ||||||| ||||||||||||||||||| |||||||||||| ||||||    
T  42537818 tcattcacgtccaaaacgttaattgaacgttaattgtgttgatctggctgctagacttgccacttcagctgctgtattggcattccac 42537905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 252 - 431
Target Start/End: Complemental strand, 45292014 - 45291835
Alignment:
Q  252 gagtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacgaactaaaaactcccccaatgtcttttccgtt 351  Q
    |||||||| ||||||||| ||||||||||||||||||||||||||  || |||||| ||||| ||| ||||| |||||||||| ||| |||| |||||||    
T  45292014 gagtaaaccctcatttgggtccctgaaagtgtacctcgctatcaggcacatccctgaatcaaggaatcgaaccaaaaactccctcaaagtctcttccgtt 45291915  T
Q  352 agtcattcacgtccaaagcgttaactgggcgttaactgtgctaatctggccgctagacttgccacttcagttgctgtatt 431  Q
    |||||||||| |||||| || |||| | | |||||| ||||| |  || | | || |||||||||||||| || ||||||    
T  45291914 agtcattcacatccaaaacgctaacagagtgttaacggtgctgacatgtctgttatacttgccacttcagctgttgtatt 45291835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 252 - 431
Target Start/End: Complemental strand, 45296139 - 45295960
Alignment:
Q  252 gagtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacgaactaaaaactcccccaatgtcttttccgtt 351  Q
    |||||||| ||||||||| ||||| ||||||||||||||||||||  || ||| |||||||| ||| ||||| |||||||||| ||| |||| |||||||    
T  45296139 gagtaaaccctcatttgggtccctaaaagtgtacctcgctatcaggcacatccatggatcaaggaatcgaaccaaaaactccctcaaagtctcttccgtt 45296040  T
Q  352 agtcattcacgtccaaagcgttaactgggcgttaactgtgctaatctggccgctagacttgccacttcagttgctgtatt 431  Q
    |||||||||| |||||| || |||| | | |||||| ||||| |  || | | || |||||||||||||| || ||||||    
T  45296039 agtcattcacatccaaaacgctaacagagtgttaacggtgctgacatgtctgttatacttgccacttcagctgttgtatt 45295960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 253 - 415
Target Start/End: Complemental strand, 40601882 - 40601718
Alignment:
Q  253 agtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacg--aactaaaaactcccccaatgtcttttccgt 350  Q
    ||||||| ||||||||| ||||||||||||| ||||||||||||  || ||||| || ||| ||||||  ||  ||||||||| | || |||| ||||||    
T  40601882 agtaaaccctcatttgggtccctgaaagtgtgcctcgctatcaggcacatccctagaacaaggaaacgcaaaaaaaaaactcctcgaaagtctcttccgt 40601783  T
Q  351 tagtcattcacgtccaaagcgttaactgggcgttaactgtgctaatctggccgctagacttgcca 415  Q
    ||||||||| | |||||| ||||||||| ||||||||| |||| |||||| |||| | |||||||    
T  40601782 tagtcattcccatccaaaacgttaactgagcgttaactctgctgatctggacgctggtcttgcca 40601718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 252 - 368
Target Start/End: Original strand, 38516620 - 38516736
Alignment:
Q  252 gagtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacgaactaaaaactcccccaatgtcttttccgtt 351  Q
    |||||||| ||||||||| ||||||||||||||| ||||||||||| || |||||||||||| ||| | ||| |||||||||| ||| || | | |||||    
T  38516620 gagtaaaccctcatttgggtccctgaaagtgtacatcgctatcagacacatccctggatcaaggaatccaaccaaaaactccctcaaagtttctcccgtt 38516719  T
Q  352 agtcattcacgtccaaa 368  Q
    |||||||||| ||||||    
T  38516720 agtcattcacatccaaa 38516736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 261 - 391
Target Start/End: Complemental strand, 41741080 - 41740948
Alignment:
Q  261 ctcatttggatccctgaaagtgtacctcgct--atcagatacgtccctggatcaatgaaacgaactaaaaactcccccaatgtcttttccgttagtcatt 358  Q
    ||||||||| |||||||||||  |||| |||  ||||| | |||||| |||||||| |||| ||| ||||||||||||||| | | |||||||||||||     
T  41741080 ctcatttgggtccctgaaagttcaccttgctctatcagctgcgtccccggatcaattaaactaaccaaaaactcccccaatatttgttccgttagtcatc 41740981  T
Q  359 cacgtccaaagcgttaactgggcgttaactgtg 391  Q
    |||||||||| |||||||||| |||||| ||||    
T  41740980 cacgtccaaaacgttaactggccgttaagtgtg 41740948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 252 - 415
Target Start/End: Original strand, 40600711 - 40600876
Alignment:
Q  252 gagtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacg--aactaaaaactcccccaatgtcttttccg 349  Q
    |||||||| ||||||||| ||||||||| ||| |||| |||||||  || ||| |||| ||| |||||   ||  ||||||||||| || |||| |||||    
T  40600711 gagtaaaccctcatttgggtccctgaaaatgtgcctctctatcaggcacatccttggaacaaggaaacacaaaaaaaaaactccccgaaagtctcttccg 40600810  T
Q  350 ttagtcattcacgtccaaagcgttaactgggcgttaactgtgctaatctggccgctagacttgcca 415  Q
    |||||||||| |||||||| ||||||||| |||||| || |||| |||||| |||| | |||||||    
T  40600811 ttagtcattcccgtccaaaacgttaactgagcgttagctctgctgatctggacgctggtcttgcca 40600876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 252 - 340
Target Start/End: Original strand, 41739622 - 41739710
Alignment:
Q  252 gagtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacgaactaaaaactcccccaatg 340  Q
    |||||||| ||||||||| | ||||||||| |  |||||||||||  || ||||| |||||||||||||||| ||||||||||||||||    
T  41739622 gagtaaaccctcatttgggttcctgaaagtattgctcgctatcaggcacatccctagatcaatgaaacgaaccaaaaactcccccaatg 41739710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 252 - 318
Target Start/End: Complemental strand, 38517812 - 38517746
Alignment:
Q  252 gagtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaa 318  Q
    |||||||| ||||||||  ||||| ||||| ||| ||||||||||| ||||||||||||||| ||||    
T  38517812 gagtaaaccctcatttgagtccctaaaagtatacatcgctatcagacacgtccctggatcaacgaaa 38517746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 402
Target Start/End: Original strand, 33061630 - 33061707
Alignment:
Q  325 aaaaactcccccaatgtcttttccgttagtcattcacgtccaaagcgttaactgggcgttaactgtgctaatctggcc 402  Q
    |||||||| || || |||| |||||||||||||||   |||||| |||||||||||| |||||  |||| ||||||||    
T  33061630 aaaaactctccgaaagtctcttccgttagtcattcctatccaaaacgttaactgggcattaacattgctgatctggcc 33061707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 85; Significance: 3e-40; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 255 - 399
Target Start/End: Complemental strand, 8481006 - 8480862
Alignment:
Q  255 taaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacgaactaaaaactcccccaatgtcttttccgttagt 354  Q
    ||||||||||||||  |||||||||||||| |||||||||||  |||||||||||||||||||||| || |||||||||||||| |||| ||||||||||    
T  8481006 taaactctcatttgagtccctgaaagtgtatctcgctatcagtcacgtccctggatcaatgaaacgcaccaaaaactcccccaaagtctcttccgttagt 8480907  T
Q  355 cattcacgtccaaagcgttaactgggcgttaactgtgctaatctg 399  Q
    ||||| | |||||| |||||||||  ||||||||||||| |||||    
T  8480906 cattcccatccaaaacgttaactgatcgttaactgtgctgatctg 8480862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 252 - 400
Target Start/End: Original strand, 41774644 - 41774792
Alignment:
Q  252 gagtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacgaactaaaaactcccccaatgtcttttccgtt 351  Q
    |||||||||||||||||| |||||||||||||||||||||||||   ||||||||| |||||  ||||| |  ||||||||||| || || | |||||||    
T  41774644 gagtaaactctcatttgggtccctgaaagtgtacctcgctatcaaccacgtccctgaatcaagaaaacgcaaaaaaaactccccgaaagtgtcttccgtt 41774743  T
Q  352 agtcattcacgtccaaagcgttaactgggcgttaactgtgctaatctgg 400  Q
    ||||||||   |||||| ||||||||| ||||||||  |||| ||||||    
T  41774744 agtcattccgatccaaaacgttaactgagcgttaacactgctgatctgg 41774792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 252 - 340
Target Start/End: Original strand, 30829927 - 30830015
Alignment:
Q  252 gagtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacgaactaaaaactcccccaatg 340  Q
    |||||||| ||||||||| |||||||||||||  |||||||||||  || ||||| |||||||||||||||| ||||||||||||||||    
T  30829927 gagtaaaccctcatttgggtccctgaaagtgttgctcgctatcaggcacatccctagatcaatgaaacgaaccaaaaactcccccaatg 30830015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 261 - 445
Target Start/End: Original strand, 8479660 - 8479845
Alignment:
Q  261 ctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacgaactaaaaa-ctcccccaatgtcttttccgttagtcattc 359  Q
    ||||||||| |||||||||||||| || ||||||||  |||| |||||||||||  |||| || ||||| ||||||||| |||| ||||||||||||||     
T  8479660 ctcatttgggtccctgaaagtgtatcttgctatcagccacgttcctggatcaatacaacgcaccaaaaacctcccccaaagtctcttccgttagtcattt 8479759  T
Q  360 acgtccaaagcgttaactgggcgttaactgtgctaatctggccgctagacttgccacttcagttgctgtattggccttccacgtag 445  Q
     | ||||||  ||||||||  | ||||| ||  | || || ||| || || |||||| ||||||| |||||||| |||||||||||    
T  8479760 ccatccaaaatgttaactgatcattaacggtaatgatgtgtccgttacacatgccacctcagttgttgtattggtcttccacgtag 8479845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 252 - 393
Target Start/End: Complemental strand, 52190430 - 52190289
Alignment:
Q  252 gagtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacgaactaaaaactcccccaatgtcttttccgtt 351  Q
    |||||||| ||||||||| |||||||||||| | |||||||||||  |  ||| ||||||||| |||||||| ||||||||||||||||||| ||  |||    
T  52190430 gagtaaaccctcatttgggtccctgaaagtgcatctcgctatcagccagatccatggatcaattaaacgaaccaaaaactcccccaatgtctgttttgtt 52190331  T
Q  352 agtcattcacgtccaaagcgttaactgggcgttaactgtgct 393  Q
    |||||    | |||||| |||||||| || ||||| ||||||    
T  52190330 agtcaaatgcatccaaaacgttaacttggtgttaaatgtgct 52190289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 252 - 356
Target Start/End: Original strand, 52189186 - 52189290
Alignment:
Q  252 gagtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacgaactaaaaactcccccaatgtcttttccgtt 351  Q
    |||||||| ||||||||| |||||||||||| |||||||||||||  || ||||||||||||| |||| ||  |||||||| | |||||| | |||||||    
T  52189186 gagtaaaccctcatttgggtccctgaaagtgcacctcgctatcagccacatccctggatcaattaaacaaatcaaaaactcgctcaatgtatgttccgtt 52189285  T
Q  352 agtca 356  Q
    |||||    
T  52189286 agtca 52189290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 252 - 391
Target Start/End: Complemental strand, 31410671 - 31410533
Alignment:
Q  252 gagtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacgaactaaaaactcccccaatgtcttttccgtt 351  Q
    |||||||| || |||| | | |||||||||| |||||||||||||| |||| |||| |||||| |||||||  ||||||| || |||| ||| |||||||    
T  31410671 gagtaaacccttatttaggttcctgaaagtgcacctcgctatcagacacgttcctgaatcaattaaacgaatcaaaaact-cctcaatatctgttccgtt 31410573  T
Q  352 agtcattcacgtccaaagcgttaactgggcgttaactgtg 391  Q
    |||||  |||||||||| |||||||||  |||||| ||||    
T  31410572 agtcacacacgtccaaaacgttaactgaacgttaagtgtg 31410533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 252 - 402
Target Start/End: Complemental strand, 41780314 - 41780164
Alignment:
Q  252 gagtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacgaactaaaaactcccccaatgtcttttccgtt 351  Q
    |||||||| ||||||||| || ||||||||||||||||||||||   |||| |||| |||||  ||||| |  ||||||||| | || || | |||||||    
T  41780314 gagtaaaccctcatttgggtctctgaaagtgtacctcgctatcaaccacgttcctgaatcaagaaaacgcaaaaaaaactcctcgaaagtgtcttccgtt 41780215  T
Q  352 agtcattcacgtccaaagcgttaactgggcgttaactgtgctaatctggcc 402  Q
    ||||||||   |||||| ||||||||| ||||||||  |||| ||||||||    
T  41780214 agtcattccgatccaaaacgttaactgagcgttaacactgctgatctggcc 41780164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 265 - 440
Target Start/End: Original strand, 31409326 - 31409498
Alignment:
Q  265 tttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacgaactaaaaactcccccaatgtcttttccgttagtcattcacgtc 364  Q
    ||||| |||||||||||| ||||||||||||   |||||| ||||||||  |||||||| |||||||||| ||   ||| ||||||||||||    | ||    
T  31409326 tttgggtccctgaaagtgcacctcgctatcaaccacgtccttggatcaaataaacgaaccaaaaactccctca---tctgttccgttagtcaaatgcatc 31409422  T
Q  365 caaagcgttaactgggcgttaactgtgctaatctggccgctagacttgccacttcagttgctgtattggccttcca 440  Q
    |||| |||||||| || |||||| ||||| || || | | || |||||||||||||| || ||| |||||||||||    
T  31409423 caaaacgttaacttggtgttaacggtgctgatgtgtcggttatacttgccacttcagctgttgtgttggccttcca 31409498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 256 - 368
Target Start/End: Complemental strand, 23545406 - 23545294
Alignment:
Q  256 aaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacgaactaaaaactcccccaatgtcttttccgttagtc 355  Q
    |||| ||||||||  ||| ||||||||||||| ||||||||| ||||| ||| |||||  |||||||| |||||||||  |||||||| || | ||||||    
T  23545406 aaaccctcatttgagtccttgaaagtgtaccttgctatcagacacgtctctgaatcaagaaaacgaaccaaaaactccttcaatgtctgtttcattagtc 23545307  T
Q  356 attcacgtccaaa 368  Q
    || ||||||||||    
T  23545306 atacacgtccaaa 23545294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115 (Bit Score: 82; Significance: 2e-38; HSPs: 4)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 252 - 445
Target Start/End: Original strand, 4336 - 4529
Alignment:
Q  252 gagtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacgaactaaaaactcccccaatgtcttttccgtt 351  Q
    |||||||| ||| ||||||||||| ||||||||  ||||||||||  |||||||| ||||||||||||| || |||||||||||||| |||| |||| ||    
T  4336 gagtaaaccctcgtttggatccctaaaagtgtatatcgctatcagccacgtccctagatcaatgaaacgcaccaaaaactcccccaaagtctcttccatt 4435  T
Q  352 agtcattcacgtccaaagcgttaactgggcgttaactgtgctaatctggccgctagacttgccacttcagttgctgtattggccttccacgtag 445  Q
    |||||||| | |||||| |||||| ||  ||||||| ||||| || || ||| || || |||||| |||||||||||||||||||||| |||||    
T  4436 agtcattcccatccaaaacgttaattgatcgttaacggtgctgatgtgtccgttacacatgccacctcagttgctgtattggccttccgcgtag 4529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 252 - 445
Target Start/End: Original strand, 12076 - 12269
Alignment:
Q  252 gagtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacgaactaaaaactcccccaatgtcttttccgtt 351  Q
    |||||||| ||| ||||||||||| ||||||||  ||||||||||  |||||||| ||||||||||||| || |||||||||||||| |||| |||| ||    
T  12076 gagtaaaccctcgtttggatccctaaaagtgtatatcgctatcagccacgtccctagatcaatgaaacgcaccaaaaactcccccaaagtctcttccatt 12175  T
Q  352 agtcattcacgtccaaagcgttaactgggcgttaactgtgctaatctggccgctagacttgccacttcagttgctgtattggccttccacgtag 445  Q
    |||||||| | |||||| |||||| ||  ||||||| ||||| || || ||| || || |||||| |||||||||||||||||||||| |||||    
T  12176 agtcattcccatccaaaacgttaattgatcgttaacggtgctgatgtgtccgttacacatgccacctcagttgctgtattggccttccgcgtag 12269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 252 - 399
Target Start/End: Complemental strand, 6141 - 5994
Alignment:
Q  252 gagtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacgaactaaaaactcccccaatgtcttttccgtt 351  Q
    |||||||| ||||||||  ||||||||||||||||||||||||||   ||||||| ||| ||||||||| || ||||||||||||||  ||| ||| |||    
T  6141 gagtaaaccctcatttgagtccctgaaagtgtacctcgctatcagccccgtccctagattaatgaaacgcaccaaaaactcccccaaaatctcttctgtt 6042  T
Q  352 agtcattcacgtccaaagcgttaactgggcgttaactgtgctaatctg 399  Q
    |||||||| |||||||| | |||||||  | ||||||||||| |||||    
T  6041 agtcattcccgtccaaaacattaactgatcattaactgtgctgatctg 5994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115; HSP #4
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 252 - 399
Target Start/End: Complemental strand, 13881 - 13734
Alignment:
Q  252 gagtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacgaactaaaaactcccccaatgtcttttccgtt 351  Q
    |||||||| ||||||||  ||||||||||||||||||||||||||   ||||||| ||| ||||||||| || ||||||||||||||  ||| ||| |||    
T  13881 gagtaaaccctcatttgagtccctgaaagtgtacctcgctatcagccccgtccctagattaatgaaacgcaccaaaaactcccccaaaatctcttctgtt 13782  T
Q  352 agtcattcacgtccaaagcgttaactgggcgttaactgtgctaatctg 399  Q
    |||||||| |||||||| | |||||||  | ||||||||||| |||||    
T  13781 agtcattcccgtccaaaacattaactgatcattaactgtgctgatctg 13734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 1e-32; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 252 - 431
Target Start/End: Complemental strand, 9448827 - 9448648
Alignment:
Q  252 gagtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacgaactaaaaactcccccaatgtcttttccgtt 351  Q
    |||||||| ||||||||| ||||||||||||||||||||||||||| || |||||||||||| ||| ||||| |||||||||| ||| |||| |||| ||    
T  9448827 gagtaaaccctcatttgggtccctgaaagtgtacctcgctatcagacacatccctggatcaaggaatcgaaccaaaaactccctcaaagtctcttccttt 9448728  T
Q  352 agtcattcacgtccaaagcgttaactgggcgttaactgtgctaatctggccgctagacttgccacttcagttgctgtatt 431  Q
    |||||||||| |||||| || |||| | | |||||| ||||| |  || | | || |||||||||||||| || ||||||    
T  9448727 agtcattcacatccaaaacgctaacagagtgttaacggtgctgacatgtctgttatacttgccacttcagctgttgtatt 9448648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 252 - 415
Target Start/End: Complemental strand, 227285 - 227121
Alignment:
Q  252 gagtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacg-aactaaaaactcccccaatgtcttttccgt 350  Q
    |||||||| ||||||||| || ||||||||||  ||| |||| ||  || ||| |||| ||| |||||| ||  ||||||||||| || |||||||||||    
T  227285 gagtaaaccctcatttgggtctctgaaagtgtgtctcactattaggcacatccatggaacaaggaaacgcaaaaaaaaactccccgaaagtcttttccgt 227186  T
Q  351 tagtcattcacgtccaaagcgttaactgggcgttaactgtgctaatctggccgctagacttgcca 415  Q
    ||||||||| | |||||| ||||||||| | ||||||| |||| |||||| |||| | |||||||    
T  227185 tagtcattcccatccaaaacgttaactgagtgttaactctgctgatctggacgctggtcttgcca 227121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 252 - 415
Target Start/End: Original strand, 226121 - 226284
Alignment:
Q  252 gagtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacgaactaaaaactcccccaatgtcttttccgtt 351  Q
    |||||||| ||||||||| ||| ||||||||| ||||||||||||  || ||| |||| ||| |||||| |  ||||||||||  || |||| ||| |||    
T  226121 gagtaaaccctcatttgggtccttgaaagtgtgcctcgctatcaggcacatccatggaacaaggaaacgcaaaaaaaactccctgaaagtctcttctgtt 226220  T
Q  352 agtcattcacgtccaaagcgttaactgggcgttaactgtgctaatctggccgctagacttgcca 415  Q
    | |||||| ||| || | |||||||||  |||||||| |||| || ||| |||| | |||||||    
T  226221 aatcattcccgttcagaacgttaactgaacgttaactctgctgatttggacgctggtcttgcca 226284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 251 - 341
Target Start/End: Original strand, 18191745 - 18191835
Alignment:
Q  251 tgagtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacgaactaaaaactcccccaatgt 341  Q
    ||||||||| ||||||||| ||||||||||||| || ||||||||||   ||||||  ||||||  || |||  |||||||||||||||||    
T  18191745 tgagtaaaccctcatttgggtccctgaaagtgtcccacgctatcagaccagtccctcaatcaatttaatgaatcaaaaactcccccaatgt 18191835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 252 - 297
Target Start/End: Complemental strand, 11020449 - 11020404
Alignment:
Q  252 gagtaaactctcatttggatccctgaaagtgtacctcgctatcaga 297  Q
    |||||||| ||||||||| ||||||||||||| |||||||||||||    
T  11020449 gagtaaaccctcatttgggtccctgaaagtgtccctcgctatcaga 11020404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 253 - 297
Target Start/End: Original strand, 11020178 - 11020222
Alignment:
Q  253 agtaaactctcatttggatccctgaaagtgtacctcgctatcaga 297  Q
    ||||||||||||||||| ||||||||||||| |||| ||||||||    
T  11020178 agtaaactctcatttgggtccctgaaagtgtccctcactatcaga 11020222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 252 - 296
Target Start/End: Complemental strand, 18193066 - 18193022
Alignment:
Q  252 gagtaaactctcatttggatccctgaaagtgtacctcgctatcag 296  Q
    |||||||| ||||||||| ||||||||||||| ||||||||||||    
T  18193066 gagtaaaccctcatttgggtccctgaaagtgtccctcgctatcag 18193022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 249 - 297
Target Start/End: Original strand, 31855648 - 31855696
Alignment:
Q  249 tttgagtaaactctcatttggatccctgaaagtgtacctcgctatcaga 297  Q
    |||||||||||||||||||| |||  |||||||||  ||||||||||||    
T  31855648 tttgagtaaactctcatttgaatctttgaaagtgtctctcgctatcaga 31855696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 249 - 402
Target Start/End: Complemental strand, 49919765 - 49919612
Alignment:
Q  249 tttgagtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacgaactaaaaactcccccaatgtcttttcc 348  Q
    ||||||||||||||||||||| ||| ||||||||| | ||||||||||  || ||||||||||||||||||| || |||||||||||||| |||| ||||    
T  49919765 tttgagtaaactctcatttgggtccttgaaagtgtgcatcgctatcagtcacttccctggatcaatgaaacgcaccaaaaactcccccaaagtctcttcc 49919666  T
Q  349 gttagtcattcacgtccaaagcgttaactgggcgttaactgtgctaatctggcc 402  Q
     | |||||||| | |||| | |||||||||  |||||||||| || ||||||||    
T  49919665 atcagtcattcccatccagaacgttaactgatcgttaactgtactgatctggcc 49919612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 252 - 446
Target Start/End: Original strand, 26529508 - 26529701
Alignment:
Q  252 gagtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacgaactaaaaactcccccaatgtcttttccgtt 351  Q
    |||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||| |||||  ||||||||||||||||||| |||||| | ||| |||    
T  26529508 gagtaaaccctcatttgggtccctgaaagtgtacctcgctatcagacacgtccctgaatcaagaaaacgaactaaaaactccctcaatgtttgttctgtt 26529607  T
Q  352 agtcattcacgtccaaagcgttaactgggcgttaactgtgctaatctggccgctagacttgccacttcagttgctgtattggccttccacgtagg 446  Q
    |||||    | |||||| |||||||| |  |||||| ||||| || || ||| || || | ||||||||| || |||| |||| |||||||||||    
T  26529608 agtcaaatgcatccaaaacgttaacttgatgttaacggtgctgatttgtccgttacacataccacttcagctgttgta-tggctttccacgtagg 26529701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 251 - 376
Target Start/End: Complemental strand, 26531152 - 26531027
Alignment:
Q  251 tgagtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacgaactaaaaactcccccaatgtcttttccgt 350  Q
    ||||||||| ||||||| | ||||||||||||||||||||||| ||| ||||||||| |||||  |||||||| |||||||||| |||||||| ||| |     
T  26531152 tgagtaaaccctcattttggtccctgaaagtgtacctcgctattagacacgtccctgaatcaagaaaacgaaccaaaaactccctcaatgtctcttctgc 26531053  T
Q  351 tagtcattcacgtccaaagcgttaac 376  Q
    ||||||| |||||||||| |||||||    
T  26531052 tagtcatacacgtccaaaacgttaac 26531027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 252 - 445
Target Start/End: Original strand, 36573962 - 36574155
Alignment:
Q  252 gagtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacgaactaaaaactcccccaatgtcttttccgtt 351  Q
    |||||||| ||||||| | |||||||||||||||||||||||||   ||||||||| |||||  ||||||||||||||||||| |||||||| |||||||    
T  36573962 gagtaaacactcatttaggtccctgaaagtgtacctcgctatcaaccacgtccctgaatcaagaaaacgaactaaaaactccctcaatgtctgttccgtt 36574061  T
Q  352 agtcattcacgtccaaagcgttaactgggcgttaactgtgctaatctggccgctagacttgccacttcagttgctgtattggccttccacgtag 445  Q
    |||||    | |||||| |||||||| |  | |||| ||||| || || ||| || || ||||||||||| || | ||||||| ||||||||||    
T  36574062 agtcaaatgcatccaaaacgttaacttgatgctaacggtgctgatgtgtccgttacacatgccacttcagctgttatattggctttccacgtag 36574155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 252 - 375
Target Start/End: Complemental strand, 36575598 - 36575475
Alignment:
Q  252 gagtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacgaactaaaaactcccccaatgtcttttccgtt 351  Q
    |||||||| ||||||||  ||||||||||||||||||||||||||| |||||| |  |||||  |||||||| ||||||| || |||||||| |||||||    
T  36575598 gagtaaaccctcatttgagtccctgaaagtgtacctcgctatcagacacgtccttaaatcaagaaaacgaaccaaaaacttcctcaatgtctgttccgtt 36575499  T
Q  352 agtcattcacgtccaaagcgttaa 375  Q
    |||||| || ||||||| ||||||    
T  36575498 agtcatacaagtccaaaacgttaa 36575475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 252 - 313
Target Start/End: Original strand, 36574956 - 36575017
Alignment:
Q  252 gagtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaa 313  Q
    ||||||||| |||||||| ||||||||||||||||||||||||| | | |||||||||||||    
T  36574956 gagtaaactttcatttgggtccctgaaagtgtacctcgctatcaaacatgtccctggatcaa 36575017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 252 - 368
Target Start/End: Original strand, 35062564 - 35062680
Alignment:
Q  252 gagtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacgaactaaaaactcccccaatgtcttttccgtt 351  Q
    ||||||||  |||||||| | ||| |||||  |||||| |||||   || |||||| |||||| |||| ||| ||||||||||||||||| | |||||||    
T  35062564 gagtaaaccttcatttgggttcctaaaagttcacctcgttatcaaccacatccctgaatcaattaaactaaccaaaaactcccccaatgtttgttccgtt 35062663  T
Q  352 agtcattcacgtccaaa 368  Q
    |||||| ||||||||||    
T  35062664 agtcatccacgtccaaa 35062680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 252 - 339
Target Start/End: Complemental strand, 35063683 - 35063596
Alignment:
Q  252 gagtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacgaactaaaaactcccccaat 339  Q
    |||||||| ||||||||| || ||||||||||  ||| |||||||  || || || |||||||||||||||| |||||||||||||||    
T  35063683 gagtaaaccctcatttgggtctctgaaagtgttgctcactatcaggcacatctctagatcaatgaaacgaaccaaaaactcccccaat 35063596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 252 - 313
Target Start/End: Original strand, 26530502 - 26530563
Alignment:
Q  252 gagtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaa 313  Q
    ||||||||  |||||||| ||||||||||||||||||||||||| | | |||||||||||||    
T  26530502 gagtaaaccttcatttgggtccctgaaagtgtacctcgctatcaaacatgtccctggatcaa 26530563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 252 - 334
Target Start/End: Original strand, 49917389 - 49917470
Alignment:
Q  252 gagtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacgaactaaaaactccc 334  Q
    |||||||||||||||||| || |||||||| || |||||||| ||  || ||| |||||||||  || |||||||||||||||    
T  49917389 gagtaaactctcatttgggtctctgaaagtatagctcgctat-agtcacatccttggatcaatttaatgaactaaaaactccc 49917470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 253 - 445
Target Start/End: Original strand, 16727813 - 16728005
Alignment:
Q  253 agtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacgaactaaaaactcccccaatgtcttttccgtta 352  Q
    ||||||| ||||||||| || |||||||||||||||||||||||  |||| |||| |||||  |||||||||||||||| || |||||||| ||||||||    
T  16727813 agtaaaccctcatttgggtcgctgaaagtgtacctcgctatcagccacgttcctgaatcaagaaaacgaactaaaaacttcctcaatgtctgttccgtta 16727912  T
Q  353 gtcattcacgtccaaagcgttaactgggcgttaactgtgctaatctggccgctagacttgccacttcagttgctgtattggccttccacgtag 445  Q
    ||||    | |||||| | |||||| |  |||||| ||||| || || ||| || || ||||||||||| || | || |||| ||||||||||    
T  16727913 gtcaaatgcatccaaaacattaacttgatgttaacggtgctgatgtgtccgttacacatgccacttcagctgttatactggctttccacgtag 16728005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 251 - 340
Target Start/End: Original strand, 38921454 - 38921543
Alignment:
Q  251 tgagtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacgaactaaaaactcccccaatg 340  Q
    ||||||||| ||||||||| |||||||||||||  ||| |||||||  || ||||| ||||||||||| |||| ||||||||||||||||    
T  38921454 tgagtaaaccctcatttgggtccctgaaagtgttgctcactatcaggcacatccctagatcaatgaaatgaaccaaaaactcccccaatg 38921543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 255 - 368
Target Start/End: Original strand, 35967351 - 35967464
Alignment:
Q  255 taaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacgaactaaaaactcccccaatgtcttttccgttagt 354  Q
    ||||| |||||||||||||||||||||  || ||| ||||||  || |||  | |||||| |||| ||| ||||||||||||||||| | ||||||||||    
T  35967351 taaaccctcatttggatccctgaaagttcacatcgttatcagccacatcctcgaatcaattaaactaaccaaaaactcccccaatgtttgttccgttagt 35967450  T
Q  355 cattcacgtccaaa 368  Q
    ||  ||||||||||    
T  35967451 caaccacgtccaaa 35967464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 252 - 339
Target Start/End: Complemental strand, 35968757 - 35968670
Alignment:
Q  252 gagtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacgaactaaaaactcccccaat 339  Q
    |||||||| || | ||||||||||||||||||   ||||||||||  || | | | |||||||||||||||| |||||||||||||||    
T  35968757 gagtaaacccttaattggatccctgaaagtgttgttcgctatcaggcacattcatagatcaatgaaacgaaccaaaaactcccccaat 35968670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 5e-23; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 252 - 415
Target Start/End: Original strand, 5005708 - 5005871
Alignment:
Q  252 gagtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacgaactaaaaactcccccaatgtcttttccgtt 351  Q
    |||||||| ||||||||| |||||||||||||||||||||||||   ||||||||| |||||  ||||| |  ||||||||| | || || | |||||||    
T  5005708 gagtaaaccctcatttgggtccctgaaagtgtacctcgctatcaaccacgtccctgaatcaagaaaacgcaaaaaaaactcctcgaaagtgtcttccgtt 5005807  T
Q  352 agtcattcacgtccaaagcgttaactgggcgttaactgtgctaatctggccgctagacttgcca 415  Q
    ||||||||   |||||| ||||||||| ||||||||  |||| |||||| |||| | |||||||    
T  5005808 agtcattccgatccaaaacgttaactgagcgttaacactgctgatctggacgctggtcttgcca 5005871  T

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Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 251 - 402
Target Start/End: Complemental strand, 5014886 - 5014735
Alignment:
Q  251 tgagtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacgaactaaaaactcccccaatgtcttttccgt 350  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||   |||||| || |||||  ||||| |  ||||||||| | || || | ||||||    
T  5014886 tgagtaaaccctcatttgggtccctgaaagtgtacctcgctatcaaccacgtccttgaatcaagaaaacgcaaaaaaaactcctcgaaagtgtcttccgt 5014787  T
Q  351 tagtcattcacgtccaaagcgttaactgggcgttaactgtgctaatctggcc 402  Q
    |||||||||   |||||| ||||||||| ||||||||  |||| ||||||||    
T  5014786 tagtcattccgatccaaaacgttaactgagcgttaacactgctgatctggcc 5014735  T

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Target: chr8; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 253 - 375
Target Start/End: Complemental strand, 3872346 - 3872224
Alignment:
Q  253 agtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacgaactaaaaactcccccaatgtcttttccgtta 352  Q
    ||||||| ||| ||||| |||||||||||| |||||||||||||  ||||||||| |||||| |||||||| |||||||| | |||||  | ||||||||    
T  3872346 agtaaaccctcgtttgggtccctgaaagtgcacctcgctatcagccacgtccctgtatcaattaaacgaaccaaaaactctctcaatggttattccgtta 3872247  T
Q  353 gtcattcacgtccaaagcgttaa 375  Q
    |||| |  |||||||| ||||||    
T  3872246 gtcaatttcgtccaaaacgttaa 3872224  T

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Target: chr8; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 251 - 356
Target Start/End: Original strand, 17863465 - 17863570
Alignment:
Q  251 tgagtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacgaactaaaaactcccccaatgtcttttccgt 350  Q
    ||||||||| ||||||||| |||||||||||| |||||||||||||  || ||| ||||||||| |||  ||| ||||||||| ||||||| | ||||||    
T  17863465 tgagtaaaccctcatttgggtccctgaaagtgcacctcgctatcagccacatccttggatcaattaaataaaccaaaaactcctccaatgtatgttccgt 17863564  T
Q  351 tagtca 356  Q
     |||||    
T  17863565 cagtca 17863570  T

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Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 252 - 313
Target Start/End: Complemental strand, 12887786 - 12887725
Alignment:
Q  252 gagtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaa 313  Q
    |||||||| ||||||||| |||||||||||||||||||| |||||| |  ||||||||||||    
T  12887786 gagtaaaccctcatttgggtccctgaaagtgtacctcgcgatcagacatatccctggatcaa 12887725  T

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Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 252 - 337
Target Start/End: Original strand, 37241028 - 37241113
Alignment:
Q  252 gagtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacgaactaaaaactccccca 337  Q
    |||||||  ||| ||||| | |||||||||||| |||||||||||  |||| | ||||||||||||||| || |||||||||||||    
T  37241028 gagtaaatcctcgtttgggttcctgaaagtgtatctcgctatcagtcacgttcttggatcaatgaaacgcaccaaaaactccccca 37241113  T

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Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 252 - 356
Target Start/End: Complemental strand, 17864776 - 17864672
Alignment:
Q  252 gagtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacgaactaaaaactcccccaatgtcttttccgtt 351  Q
    |||||||| ||||||||| ||| |||||||| | |||||||||||  || |||| |||||||  |||||||| || ||||||| |||||||| ||  |||    
T  17864776 gagtaaaccctcatttggttccttgaaagtgcatctcgctatcagccacatccccggatcaaataaacgaaccaagaactccctcaatgtctattttgtt 17864677  T
Q  352 agtca 356  Q
    |||||    
T  17864676 agtca 17864672  T

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Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 252 - 375
Target Start/End: Original strand, 3870768 - 3870891
Alignment:
Q  252 gagtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacgaactaaaaactcccccaatgtcttttccgtt 351  Q
    |||||||| |||| |||| ||||||||| || |  ||||||||||  |||||||| ||||||| || ||||  |||||||||||||||   | |||||||    
T  3870768 gagtaaaccctcacttgggtccctgaaaatgcatttcgctatcagccacgtccctagatcaattaagcgaatcaaaaactcccccaatagttgttccgtt 3870867  T
Q  352 agtcattcacgtccaaagcgttaa 375  Q
    ||||| |  |||||||| ||||||    
T  3870868 agtcaatttcgtccaaaacgttaa 3870891  T

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Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 252 - 341
Target Start/End: Complemental strand, 32565695 - 32565606
Alignment:
Q  252 gagtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccctggatcaatgaaacgaactaaaaactcccccaatgt 341  Q
    |||||||| ||| ||| | ||||||||||||| |||||||||||||   |||||| |||||||  || |||  |||||||||||||||||    
T  32565695 gagtaaaccctcgtttaggtccctgaaagtgtccctcgctatcagaccagtccctcgatcaatttaatgaatcaaaaactcccccaatgt 32565606  T

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Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 252 - 305
Target Start/End: Complemental strand, 12888305 - 12888252
Alignment:
Q  252 gagtaaactctcatttggatccctgaaagtgtacctcgctatcagatacgtccc 305  Q
    |||||||  ||||||||  ||||||||| ||||||||||||||||| |||||||    
T  12888305 gagtaaatcctcatttgagtccctgaaattgtacctcgctatcagacacgtccc 12888252  T

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Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 250 - 290
Target Start/End: Original strand, 12887022 - 12887062
Alignment:
Q  250 ttgagtaaactctcatttggatccctgaaagtgtacctcgc 290  Q
    ||||||||||||||||||| | |||||||||||||| ||||    
T  12887022 ttgagtaaactctcatttgaaaccctgaaagtgtacttcgc 12887062  T

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