View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2131_high_11 (Length: 242)
Name: NF2131_high_11
Description: NF2131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2131_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 230
Target Start/End: Original strand, 39287563 - 39287775
Alignment:
| Q |
18 |
catttgttggttgatcaagccaagaaggccagcaaataacaggcacaccagttatcaatgtctcaagtgttgagttccaaccacaatgacttagaaaaca |
117 |
Q |
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| T |
39287563 |
catttgttggttgatcaagccaagaaggccagcaaataacaggcacaccagttatcaatgtctcaagtgttgagttccaaccacaatgacttagaaaaca |
39287662 |
T |
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| Q |
118 |
agcaacagcagggtgcattaacaccttctcctgtgcacaccatttcacaaccaaacctctcccttcagtttctttcaaaaactcttttggtaattcataa |
217 |
Q |
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| T |
39287663 |
agcaacagcagggtgcattaacaccttctcctgtgcacaccatttcacaaccaaacctctcccttcagtctctttcaaaaactcttttggtaattcataa |
39287762 |
T |
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| Q |
218 |
gcagcatcctttg |
230 |
Q |
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||||||||||||| |
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| T |
39287763 |
gcagcatcctttg |
39287775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 230
Target Start/End: Complemental strand, 39491472 - 39491260
Alignment:
| Q |
18 |
catttgttggttgatcaagccaagaaggccagcaaataacaggcacaccagttatcaatgtctcaagtgttgagttccaaccacaatgacttagaaaaca |
117 |
Q |
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||||||||||||| ||| |||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39491472 |
catttgttggttggtcagtccaagatggccaaccaataacaggcacaccagttatcaatgtctcaagtgttgagttccaaccacaatgacttagaaaaca |
39491373 |
T |
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| Q |
118 |
agcaacagcagggtgcattaacaccttctcctgtgcacaccatttcacaaccaaacctctcccttcagtttctttcaaaaactcttttggtaattcataa |
217 |
Q |
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| T |
39491372 |
agcaacagcagggtgcattaacaccttctcctgtgcacaccatttcacaaccaaacctctcccttcagtctctttcaaaaactcttttggtaattcataa |
39491273 |
T |
|
| Q |
218 |
gcagcatcctttg |
230 |
Q |
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| T |
39491272 |
gcagcatcctttg |
39491260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 93 - 213
Target Start/End: Original strand, 5905995 - 5906115
Alignment:
| Q |
93 |
tccaaccacaatgacttagaaaacaagcaacagcagggtgcattaacaccttctcctgtgcacaccatttcacaaccaaacctctcccttcagtttcttt |
192 |
Q |
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|||||||||||||| | ||||||||| || |||||||| |||| |||||||| || ||||||| | |||||||||||||| |||| ||||||| |
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| T |
5905995 |
tccaaccacaatgagacaaaaaacaagccactgcagggtggcttaaaaccttctcttgattacaccatgttacaaccaaacctcttccttttgtttcttc |
5906094 |
T |
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| Q |
193 |
caaaaactcttttggtaattc |
213 |
Q |
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||||||| ||||||| ||||| |
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| T |
5906095 |
caaaaacccttttggaaattc |
5906115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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