View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2131_high_2 (Length: 701)

Name: NF2131_high_2
Description: NF2131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2131_high_2
NF2131_high_2
[»] chr7 (2 HSPs)
chr7 (19-692)||(43453248-43453921)
chr7 (19-352)||(43462687-43463020)
[»] chr1 (2 HSPs)
chr1 (200-232)||(8403596-8403628)
chr1 (101-241)||(24420812-24420952)


Alignment Details
Target: chr7 (Bit Score: 662; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 662; E-Value: 0
Query Start/End: Original strand, 19 - 692
Target Start/End: Original strand, 43453248 - 43453921
Alignment:
Q  19 aaatgtgatatcaataaaaggagcttatgaagatccggtcgttgtttatattgtaatggaattatgtgaaggaggtgagttgtttgacaggattgtggaa 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43453248 aaatgtgatatcaataaaaggagcttatgaagatccggtcgttgtttatattgtaatggaattatgtgaaggaggtgagttgtttgacaggattgtggaa 43453347  T
Q  119 aggagacattacaccgagagaaaggctgctaaactcgcaagaacgattgttaatgttgttgaggcttgtcactcatgtggagttatgcatcgtgatctta 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  43453348 aggagacattacaccgagagaaaggctgctaaactcgcaagaacgattgttaatgttgttgaggcttgtcactcacgtggagttatgcatcgtgatctta 43453447  T
Q  219 agcctgaaaatttcctttttgttgatggagatgaagattccactcttatggcaattgattttggactgtccattttcttcaaaccaggtttggaaataat 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43453448 agcctgaaaatttcctttttgttgatggagatgaagattccactcttatggcaattgattttggactgtccattttcttcaaaccaggtttggaaataat 43453547  T
Q  319 ccccttctccaaattataccaatctctaaccattgttcttttgtgagcttcaaagttcgttttctagctacttattttaatcaaagtttaattacttttt 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43453548 ccccttctccaaattataccaatctctaaccattgttcttttgtgagcttcaaagttcgttttctagctacttattttaatcaaagtttaattacttttt 43453647  T
Q  419 cccagtaaactgccttatactatcaacaaactatactcaatcatatgtgtgaatttaaaagtagtcattcataaaatgcgggttagtgactttagtagta 518  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  43453648 tccagtaaactgccttatactatcaacaaactatactcaatcatatgtgtgaatttaaaagtagtcattcataaaatgtgggttagtgactttagtagta 43453747  T
Q  519 gttatacttaaaagttggattaacccttaaataaacggctcgtaaaaggaagactacacctgcttataaacatattttatgccttatctcattcaatgtt 618  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43453748 gttatacttaaaagttggattaacccttaaataaacggctcgtaaaaggaagactacacctgcttataaacatattttatgccttatctcattcaatgtt 43453847  T
Q  619 ggactcttaacacctttgggattagaaatttggagcatgacccaagtgccccaaaagcaatgacttgatgatgt 692  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43453848 ggactcttaacacctttgggattagaaatttggagcatgacccaagtgccccaaaagcaatgacttgatgatgt 43453921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 182; E-Value: 5e-98
Query Start/End: Original strand, 19 - 352
Target Start/End: Original strand, 43462687 - 43463020
Alignment:
Q  19 aaatgtgatatcaataaaaggagcttatgaagatccggtcgttgtttatattgtaatggaattatgtgaaggaggtgagttgtttgacaggattgtggaa 118  Q
    |||||||||||  |||||||||| |||||||||| | |  |||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||| ||    
T  43462687 aaatgtgatatgtataaaaggagtttatgaagattctgatgttgtttatattgtcatggaattatgtaaaggaggtgagttgtttgataggattgtgaaa 43462786  T
Q  119 aggagacattacaccgagagaaaggctgctaaactcgcaagaacgattgttaatgttgttgaggcttgtcactcatgtggagttatgcatcgtgatctta 218  Q
    ||  |  | ||| ||||   |||||| |||||||| |||||||| || |||| |||||||||| ||||||||||| |||||||||||||| |||||||||    
T  43462787 agaggttactacgccgaacaaaaggccgctaaacttgcaagaactatcgttagtgttgttgagacttgtcactcacgtggagttatgcattgtgatctta 43462886  T
Q  219 agcctgaaaatttcctttttgttgatggagatgaagattccactcttatggcaattgattttggactgtccattttcttcaaaccaggtttggaaataat 318  Q
    ||||||||||||| ||||||||||||||| |||||||||| |||||||  ||||||||||||||| |||| | |||||||||||||||| ||||||||||    
T  43462887 agcctgaaaattttctttttgttgatggacatgaagattcaactcttaaagcaattgattttggattgtctagtttcttcaaaccaggtatggaaataat 43462986  T
Q  319 ccccttctccaaattataccaatctctaaccatt 352  Q
    |||||||||||| |||||||||||||||||||||    
T  43462987 ccccttctccaatttataccaatctctaaccatt 43463020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 200 - 232
Target Start/End: Original strand, 8403596 - 8403628
Alignment:
Q  200 gttatgcatcgtgatcttaagcctgaaaatttc 232  Q
    |||||||||||||||||||||||||| ||||||    
T  8403596 gttatgcatcgtgatcttaagcctgagaatttc 8403628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 101 - 241
Target Start/End: Complemental strand, 24420952 - 24420812
Alignment:
Q  101 tttgacaggattgtggaaaggagacattacaccgagagaaaggctgctaaactcgcaagaacgattgttaatgttgttgaggcttgtcactcatgtggag 200  Q
    ||||| ||||||||||||||  | ||||| || || |||||||| || ||||| ||||| || ||||||  |||| || || | ||||| ||   ||| |    
T  24420952 tttgataggattgtggaaagagggcattatacagaaagaaaggcggcgaaacttgcaaggactattgttggtgttattcagtcatgtcattctcttggtg 24420853  T
Q  201 ttatgcatcgtgatcttaagcctgaaaatttcctttttgtt 241  Q
    | |||||||| ||||||||||| || ||||| |||||||||    
T  24420852 taatgcatcgcgatcttaagccggagaattttctttttgtt 24420812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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