View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2131_low_16 (Length: 222)

Name: NF2131_low_16
Description: NF2131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2131_low_16
NF2131_low_16
[»] chr7 (9 HSPs)
chr7 (71-204)||(17272731-17272864)
chr7 (94-204)||(29681797-29681906)
chr7 (69-206)||(43500014-43500148)
chr7 (127-204)||(7211947-7212024)
chr7 (157-204)||(7211892-7211939)
chr7 (156-203)||(25099327-25099374)
chr7 (169-204)||(6980948-6980983)
chr7 (169-204)||(42494804-42494839)
chr7 (154-204)||(46282900-46282951)
[»] chr2 (8 HSPs)
chr2 (69-204)||(39819095-39819230)
chr2 (69-204)||(12918565-12918700)
chr2 (69-204)||(15562236-15562371)
chr2 (103-204)||(7755368-7755469)
chr2 (25-65)||(8921552-8921592)
chr2 (76-127)||(39819060-39819112)
chr2 (169-204)||(18182591-18182626)
chr2 (69-113)||(12918498-12918543)
[»] chr1 (16 HSPs)
chr1 (69-206)||(9379848-9379985)
chr1 (68-204)||(50754756-50754892)
chr1 (69-204)||(28739304-28739439)
chr1 (69-204)||(28045350-28045486)
chr1 (69-204)||(9884873-9885008)
chr1 (102-204)||(15928097-15928200)
chr1 (112-204)||(6539593-6539685)
chr1 (69-141)||(44381908-44381981)
chr1 (69-136)||(35251165-35251234)
chr1 (73-136)||(49200058-49200122)
chr1 (69-204)||(10449447-10449574)
chr1 (156-198)||(44938872-44938914)
chr1 (167-204)||(719023-719060)
chr1 (175-204)||(4579200-4579229)
chr1 (76-113)||(6539683-6539720)
chr1 (154-195)||(49199994-49200035)
[»] chr3 (13 HSPs)
chr3 (69-204)||(11512419-11512554)
chr3 (69-204)||(22893891-22894025)
chr3 (103-204)||(20286936-20287037)
chr3 (103-204)||(31342039-31342140)
chr3 (78-134)||(29081598-29081655)
chr3 (168-198)||(16205747-16205777)
chr3 (172-206)||(17547003-17547037)
chr3 (156-206)||(32385436-32385486)
chr3 (156-206)||(36738291-36738341)
chr3 (68-113)||(25790897-25790942)
chr3 (167-204)||(29081631-29081668)
chr3 (76-113)||(49159502-49159539)
chr3 (73-105)||(5633181-5633213)
[»] chr4 (14 HSPs)
chr4 (69-206)||(31846782-31846919)
chr4 (103-204)||(6607420-6607521)
chr4 (69-204)||(31012159-31012294)
chr4 (85-204)||(6608381-6608500)
chr4 (70-146)||(2254622-2254698)
chr4 (76-142)||(46321429-46321496)
chr4 (71-136)||(32008336-32008402)
chr4 (155-200)||(43063554-43063599)
chr4 (169-204)||(9712943-9712978)
chr4 (71-125)||(15031965-15032020)
chr4 (169-204)||(22435384-22435419)
chr4 (76-127)||(31846900-31846952)
chr4 (160-204)||(54223585-54223629)
chr4 (76-127)||(54613030-54613082)
[»] chr6 (4 HSPs)
chr6 (69-204)||(2543735-2543869)
chr6 (69-207)||(11448086-11448224)
chr6 (69-206)||(16193760-16193888)
chr6 (157-204)||(369498-369545)
[»] chr5 (17 HSPs)
chr5 (69-204)||(5215560-5215696)
chr5 (96-204)||(29385303-29385411)
chr5 (85-204)||(19417477-19417595)
chr5 (68-204)||(36568736-36568872)
chr5 (96-206)||(9177863-9177973)
chr5 (154-204)||(1840003-1840053)
chr5 (75-135)||(7137637-7137698)
chr5 (97-145)||(25879328-25879376)
chr5 (156-204)||(7137673-7137721)
chr5 (76-127)||(29385394-29385446)
chr5 (156-203)||(23219360-23219407)
chr5 (168-206)||(5998620-5998658)
chr5 (174-204)||(37325634-37325664)
chr5 (68-106)||(41288004-41288042)
chr5 (76-113)||(19417442-19417479)
chr5 (167-204)||(42772054-42772091)
chr5 (154-206)||(31848188-31848239)
[»] chr8 (6 HSPs)
chr8 (69-204)||(43465118-43465256)
chr8 (68-204)||(31470776-31470914)
chr8 (69-141)||(16687512-16687585)
chr8 (69-113)||(1605038-1605082)
chr8 (105-204)||(7931550-7931650)
chr8 (159-204)||(33763539-33763584)
[»] scaffold0343 (2 HSPs)
scaffold0343 (68-113)||(12225-12270)
scaffold0343 (156-204)||(12285-12333)


Alignment Details
Target: chr7 (Bit Score: 101; Significance: 3e-50; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 71 - 204
Target Start/End: Complemental strand, 17272864 - 17272731
Alignment:
Q  71 ataatacttgggtgacattgtcgttggtgatattggtgacattaccaaccacaatgttacaagtgtgcaaaacaacnnnnnnntcttgtgaaagaaaaag 170  Q
    ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||    
T  17272864 ataatacttgggtgacattgtggttggtgacattggtgacattaccaaccacaatgttacaagtgtgcaaaacaacaaaaaaatcttgtgaaagaaaaag 17272765  T
Q  171 aagaaagccacttgtgacattgtggttggccaat 204  Q
    ||||||||||| ||||||||||||||||||||||    
T  17272764 aagaaagccacatgtgacattgtggttggccaat 17272731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 94 - 204
Target Start/End: Complemental strand, 29681906 - 29681797
Alignment:
Q  94 ttggtgatattggtgacattaccaaccacaatgttacaagtgtgcaaaacaacnnnnnnntcttgtgaaagaaaaagaagaaagccacttgtgacattgt 193  Q
    ||||||| |||||||||||||||||||||||||||||||||||| ||||||||       |||||| ||| ||||| || |||||||| |||||| ||||    
T  29681906 ttggtgacattggtgacattaccaaccacaatgttacaagtgtgtaaaacaacaaaaatatcttgt-aaaaaaaaaaaaaaaagccacatgtgacgttgt 29681808  T
Q  194 ggttggccaat 204  Q
    |||||||||||    
T  29681807 ggttggccaat 29681797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 69 - 206
Target Start/End: Complemental strand, 43500148 - 43500014
Alignment:
Q  69 ggataatacttgggtgacattgtcgttggtgatattggtgacattaccaaccacaatgttacaagtgtgcaaaacaacnnnnnnntcttgtgaaagaaaa 168  Q
    |||||||| ||||| || ||||| ||||||||||||||||||||||||||||||||||||||||  || |||||||||         |||||||||||||    
T  43500148 ggataatatttgggcgatattgtggttggtgatattggtgacattaccaaccacaatgttacaa-agtacaaaacaacaaaaaaa--ttgtgaaagaaaa 43500052  T
Q  169 agaagaaagccacttgtgacattgtggttggccaatat 206  Q
    ||||||| | ||  |||||||||||| ||| |||||||    
T  43500051 agaagaatgtcatatgtgacattgtgattgaccaatat 43500014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 127 - 204
Target Start/End: Original strand, 7211947 - 7212024
Alignment:
Q  127 ttacaagtgtgcaaaacaacnnnnnnntcttgtgaaagaaaaagaagaaagccacttgtgacattgtggttggccaat 204  Q
    ||||||||||||||||||||       |||||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  7211947 ttacaagtgtgcaaaacaacaaaaaaatcttgtgaaagaaaaagaagaaagtcacatgtgacattgtggttggccaat 7212024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 157 - 204
Target Start/End: Complemental strand, 7211939 - 7211892
Alignment:
Q  157 tgtgaaagaaaaagaagaaagccacttgtgacattgtggttggccaat 204  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||    
T  7211939 tgtgaaagaaaaagaagaaagccacatgtgacattgtggttggccaat 7211892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 156 - 203
Target Start/End: Original strand, 25099327 - 25099374
Alignment:
Q  156 ttgtgaaagaaaaagaagaaagccacttgtgacattgtggttggccaa 203  Q
    |||||||||||||||||||||| |||||||||||||||||||| ||||    
T  25099327 ttgtgaaagaaaaagaagaaagacacttgtgacattgtggttgaccaa 25099374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 204
Target Start/End: Original strand, 6980948 - 6980983
Alignment:
Q  169 agaagaaagccacttgtgacattgtggttggccaat 204  Q
    ||||||||||||||||| ||||||||||||||||||    
T  6980948 agaagaaagccacttgtaacattgtggttggccaat 6980983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 204
Target Start/End: Complemental strand, 42494839 - 42494804
Alignment:
Q  169 agaagaaagccacttgtgacattgtggttggccaat 204  Q
    ||||||||||||||||||||||||||||| ||||||    
T  42494839 agaagaaagccacttgtgacattgtggtttgccaat 42494804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 204
Target Start/End: Complemental strand, 46282951 - 46282900
Alignment:
Q  154 tcttgtgaaagaaaaagaagaaag-ccacttgtgacattgtggttggccaat 204  Q
    |||||||||||| ||||||||||  |||||||||| ||||||||||||||||    
T  46282951 tcttgtgaaagagaaagaagaaaaaccacttgtgatattgtggttggccaat 46282900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 99; Significance: 5e-49; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 69 - 204
Target Start/End: Complemental strand, 39819230 - 39819095
Alignment:
Q  69 ggataatacttgggtgacattgtcgttggtgatattggtgacattaccaaccacaatgttacaagtgtgcaaaacaacnnnnnnntcttgtgaaagaaaa 168  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||||       |||||||||||||||    
T  39819230 ggataatacttgggtgacattgtggttggtgacattggtgacattaccaaccacaatattacaagtgtgcaaaacaacaaaaaaatcttgtgaaagaaaa 39819131  T
Q  169 agaagaaagccacttgtgacattgtggttggccaat 204  Q
    ||||||||||||| ||||||||||||||||||||||    
T  39819130 agaagaaagccacatgtgacattgtggttggccaat 39819095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 69 - 204
Target Start/End: Complemental strand, 12918700 - 12918565
Alignment:
Q  69 ggataatacttgggtgacattgtcgttggtgatattggtgacattaccaaccacaatgttacaagtgtgcaaaacaacnnnnnnntcttgtgaaagaaaa 168  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||||||||||       |||| ||||||||||    
T  12918700 ggataatacttgggtgacattgtggttggtgacattggtgacattaccaaccacaatgttacaaatgtgcaaaacaacaaaaaagtcttatgaaagaaaa 12918601  T
Q  169 agaagaaagccacttgtgacattgtggttggccaat 204  Q
    |||| |||||||| ||||||||||||||||||||||    
T  12918600 agaaaaaagccacatgtgacattgtggttggccaat 12918565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 69 - 204
Target Start/End: Complemental strand, 15562371 - 15562236
Alignment:
Q  69 ggataatacttgggtgacattgtcgttggtgatattggtgacattaccaaccacaatgttacaagtgtgcaaaacaacnnnnnnntcttgtgaaagaaaa 168  Q
    |||||||| |||||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||||||       ||  |||||  ||||    
T  15562371 ggataatatttgggtgacattatggttggtgatattggtgacattaccaatcacaatgttacaagtgtgcaaaacaacaaaaaaatccagtgaataaaaa 15562272  T
Q  169 agaagaaagccacttgtgacattgtggttggccaat 204  Q
    ||||||||| ||| ||||||||||||||||||||||    
T  15562271 agaagaaagtcacatgtgacattgtggttggccaat 15562236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 103 - 204
Target Start/End: Complemental strand, 7755469 - 7755368
Alignment:
Q  103 ttggtgacattaccaaccacaatgttacaagtgtgcaaaacaacnnnnnnntcttgtgaaagaaaaagaagaaagccacttgtgacattgtggttggcca 202  Q
    |||||||||||||||| ||||||||||||||||| |||||||||       |||||| |||||||||||| |||||||||||||||||||||||||||||    
T  7755469 ttggtgacattaccaatcacaatgttacaagtgtacaaaacaacaaaaaaatcttgttaaagaaaaagaaaaaagccacttgtgacattgtggttggcca 7755370  T
Q  203 at 204  Q
    ||    
T  7755369 at 7755368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 8921592 - 8921552
Alignment:
Q  25 caagcaagcaaagaaccttaccaataattagtttacctgtt 65  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  8921592 caagcaagcaaagaaccttgccaataattagtttacctgtt 8921552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 127
Target Start/End: Original strand, 39819060 - 39819112
Alignment:
Q  76 acttgggtgacattgtcgttggtgatattggtgacatt-accaaccacaatgt 127  Q
    |||||||||||||||| |||||||| ||||||||||||  |||||||||||||    
T  39819060 acttgggtgacattgtggttggtgacattggtgacattggccaaccacaatgt 39819112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 204
Target Start/End: Original strand, 18182591 - 18182626
Alignment:
Q  169 agaagaaagccacttgtgacattgtggttggccaat 204  Q
    ||||||||||||||||||||||||||||| ||||||    
T  18182591 agaagaaagccacttgtgacattgtggtttgccaat 18182626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 69 - 113
Target Start/End: Original strand, 12918498 - 12918543
Alignment:
Q  69 ggataatactt-gggtgacattgtcgttggtgatattggtgacatt 113  Q
    ||||||||||| |||||||||||| |||||||| ||||||||||||    
T  12918498 ggataatactttgggtgacattgtggttggtgacattggtgacatt 12918543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 97; Significance: 8e-48; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 69 - 206
Target Start/End: Complemental strand, 9379985 - 9379848
Alignment:
Q  69 ggataatacttgggtgacattgtcgttggtgatattggtgacattaccaaccacaatgttacaagtgtgcaaaacaacnnnnnnntcttgtgaaagaaaa 168  Q
    |||||||| |||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||||||||||||||       |||||||||||||||    
T  9379985 ggataatatttgggtgacattgtggttggtgacattggtaacattaccaaccacaatgttacaagtgtgcaaaacaacaaaaaaatcttgtgaaagaaaa 9379886  T
Q  169 agaagaaagccacttgtgacattgtggttggccaatat 206  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  9379885 agaagaaagccacatgtgacattgtggttggccaatat 9379848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 68 - 204
Target Start/End: Complemental strand, 50754892 - 50754756
Alignment:
Q  68 tggataatacttgggtgacattgtcgttggtgatattggtgacattaccaaccacaatgttacaagtgtgcaaaacaacnnnnnnntcttgtgaaagaaa 167  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||       |||||| |||||||    
T  50754892 tggataatacttgggtgacattgtggttggtgacattggtgacattatcaaccacaatgttacaagtgtgcaaaacaacaaaaaaatcttgtaaaagaaa 50754793  T
Q  168 aagaagaaagccacttgtgacattgtggttggccaat 204  Q
    |||||||||||||| ||||||||||||||||||||||    
T  50754792 aagaagaaagccacatgtgacattgtggttggccaat 50754756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 69 - 204
Target Start/End: Original strand, 28739304 - 28739439
Alignment:
Q  69 ggataatacttgggtgacattgtcgttggtgatattggtgacattaccaaccacaatgttacaagtgtgcaaaacaacnnnnnnntcttgtgaaagaaaa 168  Q
    ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||       |||||| ||||||||    
T  28739304 ggataatacttgggtgatattgtggttggtgatattggtgacattaccaaccacaatgttacaagtgtgcaaaataacaaaaaaatcttgtaaaagaaaa 28739403  T
Q  169 agaagaaagccacttgtgacattgtggttggccaat 204  Q
    |||| |||||||| ||||||||||||||||||||||    
T  28739404 agaaaaaagccacatgtgacattgtggttggccaat 28739439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 69 - 204
Target Start/End: Complemental strand, 28045486 - 28045350
Alignment:
Q  69 ggataatacttgggtgacattgtcgttggtgatattggtgacattaccaaccacaatgttacaagtgtgcaaaac-aacnnnnnnntcttgtgaaagaaa 167  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||| ||        |||||| |||||||    
T  28045486 ggataatacttgggtgacattgtggttggtgacattggtgacattaccaaccacaatgttacaagtgtacaaaacaaaaaagaaaatcttgttaaagaaa 28045387  T
Q  168 aagaagaaagccacttgtgacattgtggttggccaat 204  Q
    |||||||||||||||||||||||| ||||||||||||    
T  28045386 aagaagaaagccacttgtgacattatggttggccaat 28045350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 69 - 204
Target Start/End: Complemental strand, 9885008 - 9884873
Alignment:
Q  69 ggataatacttgggtgacattgtcgttggtgatattggtgacattaccaaccacaatgttacaagtgtgcaaaacaacnnnnnnntcttgtgaaagaaaa 168  Q
    |||| |||||||||||| ||||| |||||||| ||| ||||||||| |||||||||||||||||||||||||||||||       |||||||||||||||    
T  9885008 ggatgatacttgggtgatattgtggttggtgacattcgtgacattatcaaccacaatgttacaagtgtgcaaaacaacaaaaaaatcttgtgaaagaaaa 9884909  T
Q  169 agaagaaagccacttgtgacattgtggttggccaat 204  Q
    ||||||||||||| |||||||||||||||| |||||    
T  9884908 agaagaaagccacatgtgacattgtggttgaccaat 9884873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 102 - 204
Target Start/End: Original strand, 15928097 - 15928200
Alignment:
Q  102 attggtgacattaccaaccacaatgttacaagtgtgcaaaacaacnnnnnnn-tcttgtgaaagaaaaagaagaaagccacttgtgacattgtggttggc 200  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||        |||||||||||||||||||||||||||| ||||||||||||||||||    
T  15928097 attggtgacattatcaaccacaatgttacaagtgtacaaaacaacaacaaaaatcttgtgaaagaaaaagaagaaagccacatgtgacattgtggttggc 15928196  T
Q  201 caat 204  Q
    ||||    
T  15928197 caat 15928200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 112 - 204
Target Start/End: Original strand, 6539593 - 6539685
Alignment:
Q  112 ttaccaaccacaatgttacaagtgtgcaaaacaacnnnnnnntcttgtgaaagaaaaagaagaaagccacttgtgacattgtggttggccaat 204  Q
    |||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||| ||| |||||||||||||||| |||||    
T  6539593 ttaccaaccacaatgttacaagtgtgcaaaacaacaaaaaagtcttgtgaaagaaaaagaagaaagtcacatgtgacattgtggttgaccaat 6539685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 69 - 141
Target Start/End: Original strand, 44381908 - 44381981
Alignment:
Q  69 ggataatacttgggtgacattgtcgttggtgatattggtgacatt-accaaccacaatgttacaagtgtgcaaa 141  Q
    |||||||| |||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||| ||||    
T  44381908 ggataatatttgggtgacattgtggttggtgatattggtgacattgaccaaccacaatgttacacgtgtacaaa 44381981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 69 - 136
Target Start/End: Original strand, 35251165 - 35251234
Alignment:
Q  69 ggataatacttgggtgacat--tgtcgttggtgatattggtgacattaccaaccacaatgttacaagtgt 136  Q
    ||||||||||||| ||||||  | | ||||||||||||||||||||||||||||||||||||||||||||    
T  35251165 ggataatacttggatgacatgatatggttggtgatattggtgacattaccaaccacaatgttacaagtgt 35251234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 73 - 136
Target Start/End: Complemental strand, 49200122 - 49200058
Alignment:
Q  73 aatacttgggtgacattgtcgttggtgatattggtgacatt-accaaccacaatgttacaagtgt 136  Q
    ||||||| ||||||||||| ||||||||||||| ||||||| |||||||||||||| ||||||||    
T  49200122 aatacttaggtgacattgtggttggtgatattgatgacattgaccaaccacaatgtcacaagtgt 49200058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 69 - 204
Target Start/End: Original strand, 10449447 - 10449574
Alignment:
Q  69 ggataatacttgggtgacattgtcgttggtgatattggtgacattaccaaccacaatgttacaagtgtgcaaaacaacnnnnnnntcttgtgaaagaaaa 168  Q
    ||||||||||||||||||||||| |||||||| ||||        |||||||||||||| |||||||| ||||  |||       | |||||||||| ||    
T  10449447 ggataatacttgggtgacattgtggttggtgacattg--------accaaccacaatgtcacaagtgtacaaagaaacaaaaaaatattgtgaaagagaa 10449538  T
Q  169 agaagaaagccacttgtgacattgtggttggccaat 204  Q
    |||||||||  | ||||||||||||||||| |||||    
T  10449539 agaagaaagatatttgtgacattgtggttgaccaat 10449574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 198
Target Start/End: Original strand, 44938872 - 44938914
Alignment:
Q  156 ttgtgaaagaaaaagaagaaagccacttgtgacattgtggttg 198  Q
    |||||||||| |||||||||||||||||||  |||||||||||    
T  44938872 ttgtgaaagagaaagaagaaagccacttgtaccattgtggttg 44938914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 167 - 204
Target Start/End: Complemental strand, 719060 - 719023
Alignment:
Q  167 aaagaagaaagccacttgtgacattgtggttggccaat 204  Q
    |||||| ||||||||||||||||||||||||| |||||    
T  719060 aaagaaaaaagccacttgtgacattgtggttgtccaat 719023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 175 - 204
Target Start/End: Complemental strand, 4579229 - 4579200
Alignment:
Q  175 aagccacttgtgacattgtggttggccaat 204  Q
    ||||||||||||||||||||||||||||||    
T  4579229 aagccacttgtgacattgtggttggccaat 4579200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 76 - 113
Target Start/End: Complemental strand, 6539720 - 6539683
Alignment:
Q  76 acttgggtgacattgtcgttggtgatattggtgacatt 113  Q
    |||||||||||||||| |||| ||||||||||||||||    
T  6539720 acttgggtgacattgtggttgatgatattggtgacatt 6539683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 154 - 195
Target Start/End: Complemental strand, 49200035 - 49199994
Alignment:
Q  154 tcttgtgaaagaaaaagaagaaagccacttgtgacattgtgg 195  Q
    |||| |||||||||||||| |||| |||||||||||||||||    
T  49200035 tcttatgaaagaaaaagaaaaaagtcacttgtgacattgtgg 49199994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 95; Significance: 1e-46; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 69 - 204
Target Start/End: Complemental strand, 11512554 - 11512419
Alignment:
Q  69 ggataatacttgggtgacattgtcgttggtgatattggtgacattaccaaccacaatgttacaagtgtgcaaaacaacnnnnnnntcttgtgaaagaaaa 168  Q
    ||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||| |       |||||||||||||||    
T  11512554 ggataatacttgggtgacattatggttggtgacattggtgacattaccaaccacaatgttacaagtgtgcaaaacatcaaaaaaatcttgtgaaagaaaa 11512455  T
Q  169 agaagaaagccacttgtgacattgtggttggccaat 204  Q
    ||||||||||||| ||||||||||||||||||||||    
T  11512454 agaagaaagccacatgtgacattgtggttggccaat 11512419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 69 - 204
Target Start/End: Original strand, 22893891 - 22894025
Alignment:
Q  69 ggataatacttgggtgacattgtcgttggtgatattggtgacattaccaaccacaatgttacaagtgtgcaaaacaacnnnnnnntcttgtgaaagaaaa 168  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||       |||||| ||||||||    
T  22893891 ggataatacttgggtgacattgtggttggtgacattggtgacattaccaaccacaatgttacaagtgtacaaaacaac-aaaaaatcttgttaaagaaaa 22893989  T
Q  169 agaagaaagccacttgtgacattgtggttggccaat 204  Q
    ||||||||| ||||||||||||||||||||| ||||    
T  22893990 agaagaaagtcacttgtgacattgtggttggtcaat 22894025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 103 - 204
Target Start/End: Complemental strand, 20287037 - 20286936
Alignment:
Q  103 ttggtgacattaccaaccacaatgttacaagtgtgcaaaacaacnnnnnnntcttgtgaaagaaaaagaagaaagccacttgtgacattgtggttggcca 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||       |||||| ||||||||||||||||||||| ||||||||||||||||||||    
T  20287037 ttggtgacattaccaaccacaatgttacaagtgtgcaaaacaacaaaaaagtcttgtaaaagaaaaagaagaaagccacatgtgacattgtggttggcca 20286938  T
Q  203 at 204  Q
    ||    
T  20286937 at 20286936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 103 - 204
Target Start/End: Complemental strand, 31342140 - 31342039
Alignment:
Q  103 ttggtgacattaccaaccacaatgttacaagtgtgcaaaacaacnnnnnnntcttgtgaaagaaaaagaagaaagccacttgtgacattgtggttggcca 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||| || ||||||||||||||||||||    
T  31342140 ttggtgacattaccaaccacaatgttacaagtgtgcaaaacaacaaaaaaatcttgtgaaagaaaaagaagaaagctacatgtgacattgtggttggcca 31342041  T
Q  203 at 204  Q
    ||    
T  31342040 at 31342039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 78 - 134
Target Start/End: Original strand, 29081598 - 29081655
Alignment:
Q  78 ttgggtgacattgtcgttggtgatattggtgacatt-accaaccacaatgttacaagt 134  Q
    |||||||||||||| |||||||| || ||||||||| |||||||||||||| ||||||    
T  29081598 ttgggtgacattgtggttggtgacatcggtgacattgaccaaccacaatgtcacaagt 29081655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 198
Target Start/End: Complemental strand, 16205777 - 16205747
Alignment:
Q  168 aagaagaaagccacttgtgacattgtggttg 198  Q
    |||||||||||||||||||||||||||||||    
T  16205777 aagaagaaagccacttgtgacattgtggttg 16205747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 206
Target Start/End: Complemental strand, 17547037 - 17547003
Alignment:
Q  172 agaaagccacttgtgacattgtggttggccaatat 206  Q
    |||||||||||||||||||| ||||||||||||||    
T  17547037 agaaagccacttgtgacattatggttggccaatat 17547003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 206
Target Start/End: Original strand, 32385436 - 32385486
Alignment:
Q  156 ttgtgaaagaaaaagaagaaagccacttgtgacattgtggttggccaatat 206  Q
    |||||||||| ||||||||||  ||||| | ||||||||||||||||||||    
T  32385436 ttgtgaaagagaaagaagaaaaacacttttaacattgtggttggccaatat 32385486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 206
Target Start/End: Complemental strand, 36738341 - 36738291
Alignment:
Q  156 ttgtgaaagaaaaagaagaaagccacttgtgacattgtggttggccaatat 206  Q
    |||||||| | ||||||||||| ||||||||| |||||||||| |||||||    
T  36738341 ttgtgaaaaagaaagaagaaagacacttgtgatattgtggttgaccaatat 36738291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 68 - 113
Target Start/End: Complemental strand, 25790942 - 25790897
Alignment:
Q  68 tggataatacttgggtgacattgtcgttggtgatattggtgacatt 113  Q
    ||||||||| |||||||||||| | |||||||| ||||||||||||    
T  25790942 tggataatatttgggtgacattatggttggtgacattggtgacatt 25790897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 167 - 204
Target Start/End: Complemental strand, 29081668 - 29081631
Alignment:
Q  167 aaagaagaaagccacttgtgacattgtggttggccaat 204  Q
    |||||||||||| |||||||||||||||||||| ||||    
T  29081668 aaagaagaaagctacttgtgacattgtggttggtcaat 29081631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 76 - 113
Target Start/End: Complemental strand, 49159539 - 49159502
Alignment:
Q  76 acttgggtgacattgtcgttggtgatattggtgacatt 113  Q
    |||||||||||||||| |||||||| ||||||||||||    
T  49159539 acttgggtgacattgtggttggtgacattggtgacatt 49159502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 105
Target Start/End: Complemental strand, 5633213 - 5633181
Alignment:
Q  73 aatacttgggtgacattgtcgttggtgatattg 105  Q
    ||||||||||||||||||| |||||||||||||    
T  5633213 aatacttgggtgacattgtggttggtgatattg 5633181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 93; Significance: 2e-45; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 69 - 206
Target Start/End: Original strand, 31846782 - 31846919
Alignment:
Q  69 ggataatacttgggtgacattgtcgttggtgatattggtgacattaccaaccacaatgttacaagtgtgcaaaacaacnnnnnnntcttgtgaaagaaaa 168  Q
    ||||||||||||||||||||| | |||||||| ||| |||||||||||||||| ||||||||||||||||||||||||       |||||||||||||||    
T  31846782 ggataatacttgggtgacattatggttggtgacattcgtgacattaccaaccaaaatgttacaagtgtgcaaaacaacaaaaaaatcttgtgaaagaaaa 31846881  T
Q  169 agaagaaagccacttgtgacattgtggttggccaatat 206  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  31846882 agaagaaagccacatgtgacattgtggttggccaatat 31846919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 103 - 204
Target Start/End: Original strand, 6607420 - 6607521
Alignment:
Q  103 ttggtgacattaccaaccacaatgttacaagtgtgcaaaacaacnnnnnnntcttgtgaaagaaaaagaagaaagccacttgtgacattgtggttggcca 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||| ||||||||| ||||||| ||    
T  6607420 ttggtgacattaccaaccacaatgttacaagtgtgcaaaacaacaaaaaaatcttgtgaaagaaaaagaagaaagccacatgtgacattatggttggtca 6607519  T
Q  203 at 204  Q
    ||    
T  6607520 at 6607521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 69 - 204
Target Start/End: Complemental strand, 31012294 - 31012159
Alignment:
Q  69 ggataatacttgggtgacattgtcgttggtgatattggtgacattaccaaccacaatgttacaagtgtgcaaaacaacnnnnnnntcttgtgaaagaaaa 168  Q
    ||||||||||| ||||||||||| |||||||| ||| |||||||||||||||||||| |||||||| |||||||||||         |||||||||||||    
T  31012294 ggataatacttaggtgacattgtggttggtgacattagtgacattaccaaccacaatattacaagtatgcaaaacaacaaaaaaaaattgtgaaagaaaa 31012195  T
Q  169 agaagaaagccacttgtgacattgtggttggccaat 204  Q
    |||| |||| ||| ||||||||||||||||| ||||    
T  31012194 agaaaaaagtcacatgtgacattgtggttggtcaat 31012159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 85 - 204
Target Start/End: Complemental strand, 6608500 - 6608381
Alignment:
Q  85 acattgtcgttggtgatattggtgacattaccaaccacaatgttacaagtgtgcaaaacaac-nnnnnnntcttgtgaaagaaaaagaagaaagccactt 183  Q
    ||||||| |||||||| ||||||||||||||||||||||||||||||||| |||||||||||        |||| ||||||||||||||| ||||||| |    
T  6608500 acattgtggttggtgacattggtgacattaccaaccacaatgttacaagtctgcaaaacaacaaaaagaatctt-tgaaagaaaaagaaggaagccacgt 6608402  T
Q  184 gtgacattgtggttggccaat 204  Q
    |||||||| ||||||||||||    
T  6608401 gtgacattatggttggccaat 6608381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 70 - 146
Target Start/End: Complemental strand, 2254698 - 2254622
Alignment:
Q  70 gataatacttgggtgacattgtcgttggtgatattggtgacattaccaaccacaatgttacaagtgtgcaaaacaac 146  Q
    ||||||||||  |||||||||| ||| |||| |||| ||| |||||||| ||||||||||||||||| |||||||||    
T  2254698 gataatacttatgtgacattgtggttcgtgacattgatgatattaccaatcacaatgttacaagtgtacaaaacaac 2254622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 76 - 142
Target Start/End: Complemental strand, 46321496 - 46321429
Alignment:
Q  76 acttgggtgacattgtcgttggtgatattggtgacatt-accaaccacaatgttacaagtgtgcaaaa 142  Q
    ||||| |||||||||| ||||||||||||||||||||| |||||||||||||| |||| ||| |||||    
T  46321496 acttgagtgacattgtggttggtgatattggtgacattgaccaaccacaatgtcacaactgtacaaaa 46321429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 71 - 136
Target Start/End: Complemental strand, 32008402 - 32008336
Alignment:
Q  71 ataatacttgggtgacattgtcgttggtgatattggtgacatt-accaaccacaatgttacaagtgt 136  Q
    |||| |||||||||||||||| |||||||| ||| |||| ||| |||||||| ||||||||||||||    
T  32008402 ataacacttgggtgacattgtggttggtgacattagtgatattgaccaaccaaaatgttacaagtgt 32008336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 200
Target Start/End: Complemental strand, 43063599 - 43063554
Alignment:
Q  155 cttgtgaaagaaaaagaagaaagccacttgtgacattgtggttggc 200  Q
    |||||||||||||  || ||||||||||||||||||||||||||||    
T  43063599 cttgtgaaagaaagtgatgaaagccacttgtgacattgtggttggc 43063554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 204
Target Start/End: Original strand, 9712943 - 9712978
Alignment:
Q  169 agaagaaagccacttgtgacattgtggttggccaat 204  Q
    ||||||||||||||||||||||||||||||| ||||    
T  9712943 agaagaaagccacttgtgacattgtggttggtcaat 9712978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 71 - 125
Target Start/End: Original strand, 15031965 - 15032020
Alignment:
Q  71 ataatacttgggtgacattgtcgttggtgatattggtgacatt-accaaccacaat 125  Q
    |||| |||||||||||||||| |||| ||||||| |||||||| ||||||||||||    
T  15031965 ataacacttgggtgacattgtggttgatgatattcgtgacattgaccaaccacaat 15032020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 204
Target Start/End: Complemental strand, 22435419 - 22435384
Alignment:
Q  169 agaagaaagccacttgtgacattgtggttggccaat 204  Q
    ||||||||||||||||||||||||||||| ||||||    
T  22435419 agaagaaagccacttgtgacattgtggtttgccaat 22435384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 127
Target Start/End: Complemental strand, 31846952 - 31846900
Alignment:
Q  76 acttgggtgacattgtcgttggtgatattggtgacatt-accaaccacaatgt 127  Q
    |||||||||||||||| |||||||| |||||||| |||  |||||||||||||    
T  31846952 acttgggtgacattgtggttggtgacattggtgatattggccaaccacaatgt 31846900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 204
Target Start/End: Complemental strand, 54223629 - 54223585
Alignment:
Q  160 gaaagaaaaagaagaaagccacttgtgacattgtggttggccaat 204  Q
    |||||| ||||||||||| || |||||||||||||||||| ||||    
T  54223629 gaaagagaaagaagaaagacatttgtgacattgtggttggtcaat 54223585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 127
Target Start/End: Original strand, 54613030 - 54613082
Alignment:
Q  76 acttgggtgacattgtcgttggtgatattggtgacatt-accaaccacaatgt 127  Q
    |||||||||||||||| |||||||| ||| ||| |||| ||||||||||||||    
T  54613030 acttgggtgacattgtggttggtgacattagtggcattgaccaaccacaatgt 54613082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 83; Significance: 2e-39; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 69 - 204
Target Start/End: Original strand, 2543735 - 2543869
Alignment:
Q  69 ggataatacttgggtgacattgtcgttggtgatattggtgacattaccaaccacaatgttacaagtgtgcaaaacaacnnnnnnntcttgtgaaagaaaa 168  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||||       | |||||||||||||    
T  2543735 ggataatacttgggtgacattgtggttggtgacattggtgacattaccaaccacaatgttacaagtgtgtaaaacaacaaaaaaat-ttgtgaaagaaaa 2543833  T
Q  169 agaagaaagccacttgtgacattgtggttggccaat 204  Q
    | || |||||||| ||||||||||||||||||||||    
T  2543834 aaaaaaaagccacatgtgacattgtggttggccaat 2543869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 69 - 207
Target Start/End: Complemental strand, 11448224 - 11448086
Alignment:
Q  69 ggataatacttgggtgacattgtcgttggtgatattggtgacattaccaaccacaatgttacaagtgtgcaaaacaacnnnnnnntcttgtgaaagaaaa 168  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||         |||||||||||||    
T  11448224 ggataatacttgggtgacattgtggttggtgatattggtgacattaccaaccacaatgttataagtgtgcaaaacaacaaaaaaaatttgtgaaagaaaa 11448125  T
Q  169 agaagaaagccacttgtgacattgtggttggccaatatt 207  Q
    |||| ||||| || | | |||||||||||||||||||||    
T  11448124 agaaaaaagctacatataacattgtggttggccaatatt 11448086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 69 - 206
Target Start/End: Complemental strand, 16193888 - 16193760
Alignment:
Q  69 ggataatacttgggtgacattgtcgttggtgatattggtgacattaccaaccacaatgttacaagtgtgcaaaacaacnnnnnnntcttgtgaaagaaaa 168  Q
    ||||||||||||||||||||||| |||||||| ||||||        |||||||||||| |||||||| |||||| |        | ||||||| || ||    
T  16193888 ggataatacttgggtgacattgtggttggtgacattggt--------caaccacaatgtcacaagtgtacaaaacta-aaaaaaatattgtgaaggagaa 16193798  T
Q  169 agaagaaagccacttgtgacattgtggttggccaatat 206  Q
    ||||||||| |||||||||||||||| |||||||||||    
T  16193797 agaagaaagacacttgtgacattgtgattggccaatat 16193760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 204
Target Start/End: Original strand, 369498 - 369545
Alignment:
Q  157 tgtgaaagaaaaagaagaaagccacttgtgacattgtggttggccaat 204  Q
    ||||||||| ||||||||||| ||||||||||||||||||||| ||||    
T  369498 tgtgaaagagaaagaagaaagacacttgtgacattgtggttggtcaat 369545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 3e-35; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 69 - 204
Target Start/End: Original strand, 5215560 - 5215696
Alignment:
Q  69 ggataatacttgggtgacattgtcgttggtgatattggtgacattaccaaccacaatgttacaagtgtgcaaaacaacnnnnnnntcttgtgaaagaaaa 168  Q
    ||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||| |||||||||       |||||||||||||||    
T  5215560 ggataatacttgggtgacattgtggttggtaacattggtgacattaccaaccacaatgttacaagtgtacaaaacaacaacaaaatcttgtgaaagaaaa 5215659  T
Q  169 agaag-aaagccacttgtgacattgtggttggccaat 204  Q
    | ||| |||||||| ||||| |||||||||| |||||    
T  5215660 ataagaaaagccacatgtgatattgtggttgaccaat 5215696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 96 - 204
Target Start/End: Original strand, 29385303 - 29385411
Alignment:
Q  96 ggtgatattggtgacattaccaaccacaatgttacaagtgtgcaaaacaacnnnnnnntcttgtgaaagaaaaagaagaaagccacttgtgacattgtgg 195  Q
    ||||| ||| |||| ||||||||||||||||||||||||||||||||||||       ||| | |||||||||||||||||||||| |||||||||||||    
T  29385303 ggtgacattagtgatattaccaaccacaatgttacaagtgtgcaaaacaacaaaaaaatctagcgaaagaaaaagaagaaagccacatgtgacattgtgg 29385402  T
Q  196 ttggccaat 204  Q
    |||||||||    
T  29385403 ttggccaat 29385411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 85 - 204
Target Start/End: Complemental strand, 19417595 - 19417477
Alignment:
Q  85 acattgtcgttggtgatattggtgacattaccaaccacaatgttacaagtgtgcaaaacaacnnnnnnntcttgtgaaagaaaaagaagaaagccacttg 184  Q
    ||||||| |||||||| ||||||||||||||||||||||||||| |||||||||||||||||       |||||||||||||||  ||||||| ||| ||    
T  19417595 acattgtggttggtgacattggtgacattaccaaccacaatgtt-caagtgtgcaaaacaacaaaaaaatcttgtgaaagaaaagaaagaaagtcacatg 19417497  T
Q  185 tgacattgtggttggccaat 204  Q
    ||||||||| |||| |||||    
T  19417496 tgacattgtagttgaccaat 19417477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 68 - 204
Target Start/End: Complemental strand, 36568872 - 36568736
Alignment:
Q  68 tggataatacttgggtgacattgtcgttggtgatattggtgacattaccaaccacaatgttacaagtgtgcaaaacaacnnnnnnntcttgtgaaagaaa 167  Q
    ||||||||||||  |||||||||| |||||||| ||| ||||||| | ||||||||||||||||||||| |||||||||       | ||||||||||||    
T  36568872 tggataatacttatgtgacattgtggttggtgacattagtgacataatcaaccacaatgttacaagtgtacaaaacaac-aaaaaatattgtgaaagaaa 36568774  T
Q  168 aagaagaaagccacttgtgaca-ttgtggttggccaat 204  Q
    | |||||||||||| ||||||| ||||||||| |||||    
T  36568773 aggaagaaagccacatgtgacatttgtggttgaccaat 36568736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 96 - 206
Target Start/End: Original strand, 9177863 - 9177973
Alignment:
Q  96 ggtgatattggtgacattaccaaccacaatgttacaagtgtgcaaaacaacnnnnnnntcttgtgaaagaaaaagaagaaagccacttgtgacattgtgg 195  Q
    ||||| |||| ||||| ||||||||||||||||| |||||||||||||||        | |||||||||||||||||||||| ||| ||||| |||||||    
T  9177863 ggtgacattgatgacactaccaaccacaatgttataagtgtgcaaaacaataaaaaaatattgtgaaagaaaaagaagaaagtcacatgtgatattgtgg 9177962  T
Q  196 ttggccaatat 206  Q
    |||||||||||    
T  9177963 ttggccaatat 9177973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 154 - 204
Target Start/End: Complemental strand, 1840053 - 1840003
Alignment:
Q  154 tcttgtgaaagaaaaagaagaaagccacttgtgacattgtggttggccaat 204  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  1840053 tcttgtgaaagaaaaagaagaaagccacatgtgacattgtggttggccaat 1840003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 75 - 135
Target Start/End: Original strand, 7137637 - 7137698
Alignment:
Q  75 tacttgggtgacattgtcgttggtgatattggtgacatt-accaaccacaatgttacaagtg 135  Q
    ||||||||||||||||  |||||||| |||||||||||| |||||||||||||| |||||||    
T  7137637 tacttgggtgacattgcagttggtgaaattggtgacattgaccaaccacaatgtcacaagtg 7137698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 97 - 145
Target Start/End: Original strand, 25879328 - 25879376
Alignment:
Q  97 gtgatattggtgacattaccaaccacaatgttacaagtgtgcaaaacaa 145  Q
    |||||||||||||||||| |||||||||||||||||||||  |||||||    
T  25879328 gtgatattggtgacattatcaaccacaatgttacaagtgtataaaacaa 25879376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 204
Target Start/End: Complemental strand, 7137721 - 7137673
Alignment:
Q  156 ttgtgaaagaaaaagaagaaagccacttgtgacattgtggttggccaat 204  Q
    |||||||||| || |||||||| ||||||||||||||||||||| ||||    
T  7137721 ttgtgaaagagaatgaagaaagtcacttgtgacattgtggttggtcaat 7137673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 127
Target Start/End: Complemental strand, 29385446 - 29385394
Alignment:
Q  76 acttgggtgacattgtcgttggtgatattggtgacatt-accaaccacaatgt 127  Q
    |||||||||||||||| |||||||| ||||||||||||  |||||||||||||    
T  29385446 acttgggtgacattgtggttggtgacattggtgacattggccaaccacaatgt 29385394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 203
Target Start/End: Original strand, 23219360 - 23219407
Alignment:
Q  156 ttgtgaaagaaaaagaagaaagccacttgtgacattgtggttggccaa 203  Q
    |||||||||||||||||||||| ||  | |||||||||||||||||||    
T  23219360 ttgtgaaagaaaaagaagaaagtcatatatgacattgtggttggccaa 23219407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 206
Target Start/End: Original strand, 5998620 - 5998658
Alignment:
Q  168 aagaagaaagccacttgtgacattgtggttggccaatat 206  Q
    |||||||||| ||||||||| ||||||||||||||||||    
T  5998620 aagaagaaagtcacttgtgatattgtggttggccaatat 5998658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 204
Target Start/End: Original strand, 37325634 - 37325664
Alignment:
Q  174 aaagccacttgtgacattgtggttggccaat 204  Q
    |||||||||||||||||||||||||||||||    
T  37325634 aaagccacttgtgacattgtggttggccaat 37325664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 106
Target Start/End: Complemental strand, 41288042 - 41288004
Alignment:
Q  68 tggataatacttgggtgacattgtcgttggtgatattgg 106  Q
    ||||||||| |||||||||||||| ||||||||||||||    
T  41288042 tggataatatttgggtgacattgtggttggtgatattgg 41288004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 76 - 113
Target Start/End: Original strand, 19417442 - 19417479
Alignment:
Q  76 acttgggtgacattgtcgttggtgatattggtgacatt 113  Q
    |||||||||||||||| |||||||| ||||||||||||    
T  19417442 acttgggtgacattgtggttggtgacattggtgacatt 19417479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 167 - 204
Target Start/End: Original strand, 42772054 - 42772091
Alignment:
Q  167 aaagaagaaagccacttgtgacattgtggttggccaat 204  Q
    ||||||||||| ||||||||||||||||||||| ||||    
T  42772054 aaagaagaaagacacttgtgacattgtggttggtcaat 42772091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 206
Target Start/End: Complemental strand, 31848239 - 31848188
Alignment:
Q  154 tcttgtgaaagaaaaagaagaaagccacttgtgacattgtggttggccaatat 206  Q
    |||||||||||| | |||||||| ||||||||||| |||||||||| ||||||    
T  31848239 tcttgtgaaagagagagaagaaa-ccacttgtgaccttgtggttggtcaatat 31848188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 6e-33; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 69 - 204
Target Start/End: Complemental strand, 43465256 - 43465118
Alignment:
Q  69 ggataatacttgggtgacattgtcgttggtgatattggtgacattaccaaccac---aatgttacaagtgtgcaaaacaacnnnnnnntcttgtgaaaga 165  Q
    ||||||||||||| ||||||| | |||||||| |||||||| ||||||||||||   ||||||||||||||||||||||||       |||||||||| |    
T  43465256 ggataatacttggatgacattctggttggtgacattggtgaaattaccaaccaccacaatgttacaagtgtgcaaaacaacaaaaaaatcttgtgaaaaa 43465157  T
Q  166 aaaagaagaaagccacttgtgacattgtggttggccaat 204  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  43465156 aaaagaagaaagccacatgtgatattgtggttggccaat 43465118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 68 - 204
Target Start/End: Complemental strand, 31470914 - 31470776
Alignment:
Q  68 tggataatacttggg-tgacattgtcgttggtgatattggtgacatt-accaaccacaatgttacaagtgtgcaaaacaacnnnnnnntcttgtgaaaga 165  Q
    ||||||||||||||| ||| ||||| ||||||| |||||||||||||  ||||||||||||| |||||||| ||||  |||       | ||||||||||    
T  31470914 tggataatacttggggtgatattgtggttggtggtattggtgacattggccaaccacaatgtcacaagtgtacaaagaaacaaaaaaatattgtgaaaga 31470815  T
Q  166 aaaagaagaaagccacttgtgacattgtggttggccaat 204  Q
    |||||||||| |  |||||||||||||||||||| ||||    
T  31470814 aaaagaagaatgatacttgtgacattgtggttggtcaat 31470776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 69 - 141
Target Start/End: Original strand, 16687512 - 16687585
Alignment:
Q  69 ggataatacttgggtgacattgtcgttggtgatattggtgacatta-ccaaccacaatgttacaagtgtgcaaa 141  Q
    ||||||||||||| ||||||||| |||||||||||||||||||||| | |||||||||||  ||||||| ||||    
T  16687512 ggataatacttggatgacattgtggttggtgatattggtgacattagctaaccacaatgtcccaagtgtacaaa 16687585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 69 - 113
Target Start/End: Complemental strand, 1605082 - 1605038
Alignment:
Q  69 ggataatacttgggtgacattgtcgttggtgatattggtgacatt 113  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||    
T  1605082 ggataatacttgggtgacattgtagttggtgacattggtgacatt 1605038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 204
Target Start/End: Original strand, 7931550 - 7931650
Alignment:
Q  105 ggtgacatt-accaaccacaatgttacaagtgtgcaaaacaacnnnnnnntcttgtgaaagaaaaagaagaaagccacttgtgacattgtggttggccaa 203  Q
    ||||||||| |||||||||||||| |||||||| ||||  |||       | || ||||||| ||||||||||| || |||||||||||||||| |||||    
T  7931550 ggtgacattgaccaaccacaatgtcacaagtgtacaaagaaacaaaaaaatattatgaaagagaaagaagaaagacatttgtgacattgtggtttgccaa 7931649  T
Q  204 t 204  Q
    |    
T  7931650 t 7931650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 159 - 204
Target Start/End: Original strand, 33763539 - 33763584
Alignment:
Q  159 tgaaagaaaaagaagaaagccacttgtgacattgtggttggccaat 204  Q
    ||||||||||||||||||| ||||||||| ||||| |||| |||||    
T  33763539 tgaaagaaaaagaagaaaggcacttgtgatattgtagttgaccaat 33763584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0343 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 68 - 113
Target Start/End: Original strand, 12225 - 12270
Alignment:
Q  68 tggataatacttgggtgacattgtcgttggtgatattggtgacatt 113  Q
    |||||||||||||||||||||||| |||||||| |||| |||||||    
T  12225 tggataatacttgggtgacattgtagttggtgacattgatgacatt 12270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0343; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 204
Target Start/End: Original strand, 12285 - 12333
Alignment:
Q  156 ttgtgaaagaaaaagaagaaagccacttgtgacattgtggttggccaat 204  Q
    |||||||||| ||||||||| | ||||||||||||||||||||| ||||    
T  12285 ttgtgaaagagaaagaagaaggacacttgtgacattgtggttggtcaat 12333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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