View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2131_low_2 (Length: 832)
Name: NF2131_low_2
Description: NF2131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2131_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 412; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 9 - 487
Target Start/End: Complemental strand, 43455057 - 43454579
Alignment:
| Q |
9 |
acatcatcattcacaatttagtaacaaaaattcatgttctgcataattaaacaattaatgcgacagatttagtgatgaaaaatcaagcgctaaatgtgta |
108 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
43455057 |
acatcatcattcacaatttagtaacaaaaattcatgttctgcataattaaacaattaatgcgacagatttagtgatgaaaaatcaagcgctaaatgttta |
43454958 |
T |
|
| Q |
109 |
tttattttttcttcttaaaaacaattgcaatagctgaagatgcaacaaccagaaacaataaaaagcactagaataaagaaaatatcaaaatgtgtattga |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43454957 |
tttattttttcttcttaaaaacaattgcaatagctgaagatgcaacaaccataaacaataaaaagcactagaataaagaaaatatcaaaatgtgtattga |
43454858 |
T |
|
| Q |
209 |
atctaacgatacttaaatgtaaaaatatgaaatatgtttcactaatttcataatttnnnnnnnnnnnnngagtagtgaaacttacttagaactccatgag |
308 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |
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| T |
43454857 |
atctaacgatacttaaatgtaaaaatatgaaatatgtttcactaatttcataatttaaaaaagaaaaaagagtagtgaaacttacttagaacttcatgag |
43454758 |
T |
|
| Q |
309 |
ctttaattcgtgttttaggatctctatcaagcatctttttaaccaagtctttggcacttacagaaatacttggccaaggatcggaacagaaatcaacttc |
408 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |
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| T |
43454757 |
ctttaattcgtgttttaggatctctatcaagcatcttcttaaccaagtctttggcactttcagatatacttggccaaggatcggaacagaaatcaacttc |
43454658 |
T |
|
| Q |
409 |
accatgtaaaacctcatcaaatatctcttgatccaattctattaccaaagaacataatcaaaatcctctattattatat |
487 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43454657 |
accatgtaaaacctcatcaaatatctctcgatccaattctattaccaaagaacataatcaaaatcctctattattatat |
43454579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 528 - 832
Target Start/End: Complemental strand, 43454538 - 43454234
Alignment:
| Q |
528 |
atcgtgaagatatcttaccaccataaaatggaggtgttccacataagagaatgtatatgatcacacctgcactccatacatcagcttctggcccataaca |
627 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43454538 |
atcgtgaagatatcttaccaccataaaagggaggtgttccacataagagaatgtatatgatcacacctgcactccatacatcagcttctggcccataaca |
43454439 |
T |
|
| Q |
628 |
ctcttctataacctcaggtgcaacataataagcacttccgtcaaaatcactaaattttacccctgtaaaagaagattgttagtaacaaagactatatatg |
727 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
43454438 |
ctcttctataacctcaggtgcaacataataagcacttccgacaaaatcactaaatttttcccctgtaaaagaagattgttagtaacaaagactatatatg |
43454339 |
T |
|
| Q |
728 |
atcattacaccaatagtaggtatnnnnnnngaagaagactgtatctgtgcttatgccatgagtggttcaccactcttttggaaggtattaacaactaggc |
827 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43454338 |
atcattacaccaatagtaggtataaaaaaagaagaagactgtatccgtgcttattccatgagtggttcaccactcttttggaaggtattaacaactaggc |
43454239 |
T |
|
| Q |
828 |
gcttt |
832 |
Q |
| |
|
||||| |
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|
| T |
43454238 |
gcttt |
43454234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 11 - 487
Target Start/End: Complemental strand, 43463776 - 43463295
Alignment:
| Q |
11 |
atcatcattcacaatttagtaacaaaaattcatgttctgcataattaaacaattaatgcgacagatttagtgatgaaaaatcaagcgctaaatgtgtatt |
110 |
Q |
| |
|
||||||||||||||| | |||| |||| || |||||||| |||||||||||||||||||| | ||||||||| |||||||||||| |||||||||| |
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| T |
43463776 |
atcatcattcacaatatggtaataaaagttaatgttctgtataattaaacaattaatgcggtaagtttagtgattaaaaatcaagcggtaaatgtgta-- |
43463679 |
T |
|
| Q |
111 |
tattttttct-tcttaaaaacaattgcaatagctgaagatgcaacaaccagaaacaataaaaagcactagaataaagaaaatatcaaaatgtgtattgaa |
209 |
Q |
| |
|
||||||||| |||||||||||| || ||||||||||||||||||||||| |||||||||||| |||||| ||||||||||||| ||||||| || |||| |
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| T |
43463678 |
-attttttctctcttaaaaacaactgtaatagctgaagatgcaacaaccataaacaataaaaaacactagtataaagaaaatatgaaaatgtataatgaa |
43463580 |
T |
|
| Q |
210 |
tctaacgatacttaaa-tgtaaaaatatgaaatatgtttcactaatttcataatttnnnnnnnnnnnnn------gagtagtgaaacttacttagaactc |
302 |
Q |
| |
|
|||| |||||||||| ||| |||||| ||||||||||| |||| || |||||| |||| |||||||||||||||| || |
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| T |
43463579 |
tctatggatacttaaaatgtgaaaataaagaatatgtttcagtaatatcgtaatttaaaaaagaaaaagaaaaaagagtggtgaaacttacttagagctt |
43463480 |
T |
|
| Q |
303 |
catgagctttaattcgtgttttaggatctctatcaagcatctttttaaccaagtctttggcacttacagaaatacttggccaaggatcggaacagaaatc |
402 |
Q |
| |
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|||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||| |
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| T |
43463479 |
catgtgctgtaattcgtgttttaggatctctatcaagcatcttcttaaccaagtctttggcactttcagaaatacttggccaaggatccgaagagaaatc |
43463380 |
T |
|
| Q |
403 |
aacttcaccatgtaaaacctcatcaaatatctcttgatccaattctattaccaaagaacataatcaaaatcctctattattatat |
487 |
Q |
| |
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|| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||| |||||| |
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| T |
43463379 |
aatttcaccatgtaaaaccttatcaaatatctcttgctccaattctattaccaaagaacaaaatcaaaatccactatttttatat |
43463295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 532 - 748
Target Start/End: Complemental strand, 43463247 - 43463028
Alignment:
| Q |
532 |
tgaagatatcttaccaccataaaatggaggtgttccacataagagaatgtatatgatcacacctgcactccatacatcagcttctggcccataacactct |
631 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||| ||||||||||| || ||||||||||||||| |||||||| ||||||||||||||||||||||||||| |
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| T |
43463247 |
tgaagataacttaccaccatcaaatggaggtgctccacataagaaaaagtatatgatcacacccgcactccacacatcagcttctggcccataacactct |
43463148 |
T |
|
| Q |
632 |
tctataacctcaggtgcaacataataagcacttccgtcaaaatcactaaattttacccctgtaaaagaagattgttagtaacaaagactatatatgatca |
731 |
Q |
| |
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||||||||||||||| | |||||||| |||||| | ||||||||||||| | |||| || |||||||||||||| ||||||||||||||| |||| |
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| T |
43463147 |
cttataacctcaggtgccatataataaggacttcctactgcatcactaaatttttctcctgcaatagaagattgttagtcacaaagactatatattatca |
43463048 |
T |
|
| Q |
732 |
ttac---accaatagtaggt |
748 |
Q |
| |
|
|||| ||||||||||||| |
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|
| T |
43463047 |
ttacagtaccaatagtaggt |
43463028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 336 - 404
Target Start/End: Original strand, 24419871 - 24419939
Alignment:
| Q |
336 |
caagcatctttttaaccaagtctttggcacttacagaaatacttggccaaggatcggaacagaaatcaa |
404 |
Q |
| |
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|||||||||| |||||||||||||| |||||| |||| ||||| ||||| ||||| || ||||||||| |
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| T |
24419871 |
caagcatcttcttaaccaagtcttttgcactttcagagatactaggccatggatccgatgagaaatcaa |
24419939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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