View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2131_low_6 (Length: 398)

Name: NF2131_low_6
Description: NF2131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2131_low_6
NF2131_low_6
[»] chr7 (4 HSPs)
chr7 (23-368)||(20078704-20079046)
chr7 (210-398)||(20084947-20085130)
chr7 (139-198)||(20071857-20071916)
chr7 (271-306)||(20071752-20071787)
[»] chr6 (1 HSPs)
chr6 (271-346)||(32429525-32429600)
[»] chr8 (1 HSPs)
chr8 (271-341)||(30467148-30467218)
[»] chr5 (1 HSPs)
chr5 (277-347)||(36447591-36447661)
[»] chr1 (2 HSPs)
chr1 (273-341)||(15536240-15536309)
chr1 (273-341)||(22545134-22545203)


Alignment Details
Target: chr7 (Bit Score: 98; Significance: 4e-48; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 23 - 368
Target Start/End: Complemental strand, 20079046 - 20078704
Alignment:
Q  23 aatgtccgtaacactctttggaggtgtatattggggattattttataataaacgagtatctatcaataattattctttttgtaaggtagattaagtcaag 122  Q
    ||||||| |||||| || ||||||||||||||||||||| |  || || |||  ||| |||||||||| | ||| ||||||||||||||| | |||||||    
T  20079046 aatgtccctaacaccctatggaggtgtatattggggatt-tgataaaaaaaaaaagtgtctatcaatagtaattttttttgtaaggtagactgagtcaag 20078948  T
Q  123 cagatttcatcgtcttgtaaacaaatgatttctcattagttgtctgataaatttggatttagattctctcaattgannnnnnnnnnctaaatggaactgc 222  Q
    ||||| || |||||| ||||||| ||||||||||||||||||  ||||||||||||||||||||||||||||||||            ||||||||  ||    
T  20078947 cagatgtcgtcgtctcgtaaacagatgatttctcattagttg--tgataaatttggatttagattctctcaattgaattttttttttcaaatggaatcgc 20078850  T
Q  223 aaccactaaactt-aaagagaacgtagaaatttaattnnnnnnnnnnnngtggttgttgtaatttaatgatagagattgacaatggagaaaattggggaa 321  Q
    ||||| ||||||| ||||||||  | || | |||| |            || ||||||||| |||| |||||||||||||||||||||||| |||| |||    
T  20078849 aaccattaaacttaaaagagaaaat-gagaattaaattaagaaaaaaaagtagttgttgtattttattgatagagattgacaatggagaaagttggagaa 20078751  T
Q  322 aattttcaatgaagagaatcgaaatctgacaaatcttcttctggatc 368  Q
    |||||||||||||||||||| | |||||||||||| |||||||||||    
T  20078750 aattttcaatgaagagaatccatatctgacaaatcatcttctggatc 20078704  T

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Target: chr7; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 210 - 398
Target Start/End: Complemental strand, 20085130 - 20084947
Alignment:
Q  210 taaatggaactgcaaccactaaacttaaagagaacgtagaaatttaattnnnnnnnnnnnngtggttgttgtaatttaatgatagagattgacaatggag 309  Q
    ||||||||| ||||||||||| ||||| ||||||| |||||||||||||            ||| |||||||||||||||||||||||||||||||||||    
T  20085130 taaatggaattgcaaccactatacttatagagaacctagaaatttaattaaaaaaaaaa--gtgcttgttgtaatttaatgatagagattgacaatggag 20085033  T
Q  310 aaaattggggaaaattttcaatgaagagaatcgaaatctgacaaatcttcttctggatcataatatataggcggccgacgtgctttcat 398  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||   |||||||||| || |||||||||||||    
T  20085032 aaaattggggaaaaatttcaatgaagagaatcgaaatccgacaaatcttcttctggatc---atatataggcagcagacgtgctttcat 20084947  T

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Target: chr7; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 139 - 198
Target Start/End: Complemental strand, 20071916 - 20071857
Alignment:
Q  139 gtaaacaaatgatttctcattagttgtctgataaatttggatttagattctctcaattga 198  Q
    ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  20071916 gtaaacatatgatttctcattagttgtttgataaatttggatttagattctctcaattga 20071857  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 271 - 306
Target Start/End: Complemental strand, 20071787 - 20071752
Alignment:
Q  271 gtggttgttgtaatttaatgatagagattgacaatg 306  Q
    |||||||||||| |||||||||||||||||||||||    
T  20071787 gtggttgttgtattttaatgatagagattgacaatg 20071752  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 271 - 346
Target Start/End: Original strand, 32429525 - 32429600
Alignment:
Q  271 gtggttgttgtaatttaatgatagagattgacaatggagaaaattggggaaaattttcaatgaagagaatcgaaat 346  Q
    ||||||||| || ||||||| | |||||||| ||||||||||| | | |||||||||||||| |||| ||| ||||    
T  32429525 gtggttgttatattttaatggtggagattgaaaatggagaaaacttgagaaaattttcaatggagaggatccaaat 32429600  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 271 - 341
Target Start/End: Complemental strand, 30467218 - 30467148
Alignment:
Q  271 gtggttgttgtaatttaatgatagagattgacaatggagaaaattggggaaaattttcaatgaagagaatc 341  Q
    |||||||||||| | |||||||  ||||||| |||||||||||||   || ||||||||||| ||||||||    
T  30467218 gtggttgttgtattataatgatgaagattgaaaatggagaaaatttcagagaattttcaatggagagaatc 30467148  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 277 - 347
Target Start/End: Complemental strand, 36447661 - 36447591
Alignment:
Q  277 gttgtaatttaatgatagagattgacaatggagaaaattggggaaaattttcaatgaagagaatcgaaatc 347  Q
    |||||| ||||||| |  ||||||| ||||||||||||||  ||||||||||||| ||||| ||| |||||    
T  36447661 gttgtattttaatggtgaagattgaaaatggagaaaattgaagaaaattttcaataaagaggatccaaatc 36447591  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 341
Target Start/End: Complemental strand, 15536309 - 15536240
Alignment:
Q  273 ggttgttgtaatttaatgatagagattgacaatggagaaaa-ttggggaaaattttcaatgaagagaatc 341  Q
    |||||||||| ||||||| |  ||||||| ||||||||||| || | |||||||||||||| ||||||||    
T  15536309 ggttgttgtattttaatggtgaagattgaaaatggagaaaacttagagaaaattttcaatggagagaatc 15536240  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 341
Target Start/End: Complemental strand, 22545203 - 22545134
Alignment:
Q  273 ggttgttgtaatttaatgatagagattgacaatggagaaaa-ttggggaaaattttcaatgaagagaatc 341  Q
    |||||||||| ||||||| |  ||||||| ||||||||||| || | |||||||||||||| ||||||||    
T  22545203 ggttgttgtattttaatggtgaagattgaaaatggagaaaacttagagaaaattttcaatggagagaatc 22545134  T

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