View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21320_high_13 (Length: 248)
Name: NF21320_high_13
Description: NF21320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21320_high_13 |
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Alignment Details
Target: chr7 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 59 - 231
Target Start/End: Original strand, 35454713 - 35454890
Alignment:
| Q |
59 |
aaatatgtattttgaattctggcaataataca----agttaagaaatgtct-tgtcatttgagcatgtcacgttatattagagttgcattcaatatgaga |
153 |
Q |
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| T |
35454713 |
aaatatgtattttgaattttggcaataatacatacaagttaagaaatgtctctgtcatttgagcacgtcatgttatattagagttgcattcaatatgaga |
35454812 |
T |
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| Q |
154 |
aagtataaagaaatttacaagcatggattcttgatccattggaatttggtggtgatggagcatcaagataatgaaatt |
231 |
Q |
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| T |
35454813 |
aagtataaagaaatttacaatcatggattcgtgatctattagaatttggtggtgatggagcatcaagataatgaaatt |
35454890 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 15205704 - 15205668
Alignment:
| Q |
1 |
tcgagtgaaaagaatacaatatgttcctcaaaacact |
37 |
Q |
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| T |
15205704 |
tcgagtgaaaacaatacaatatgttcctcaaaccact |
15205668 |
T |
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