View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21320_high_2 (Length: 554)
Name: NF21320_high_2
Description: NF21320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21320_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 469; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 20 - 492
Target Start/End: Original strand, 40517368 - 40517840
Alignment:
| Q |
20 |
atatacacacaaaatgaaagattgattaatttacaacctcgtaatattgaaggctaggttgaagctagtgatgattttctacatatgggacaagtggaat |
119 |
Q |
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| T |
40517368 |
atatacacacaaaatgaaagattgattaatttacaacctcgtaatattgaaggctaggttgaagctagtgatgattttctacatatgggacaagtggaat |
40517467 |
T |
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| Q |
120 |
gtaacacgagccatggatcaacacaagcaacatgataaagatgaccacaatctggaagtaacctcaacatgtcactttctttataatctcctaagcaaat |
219 |
Q |
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| T |
40517468 |
gtaacacgagccatggatcaacacaagcaacatgataaagatgaccacaatctggaagtaacctcaacatgtcactttctttataatctcctaagcaaat |
40517567 |
T |
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| Q |
220 |
agagcaactaattgaagttgaagaaccattcttctgaatttgagagtataacagtttcgggtatccttcaaaacttgtgtcggtgtgatgacgaagtcct |
319 |
Q |
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| T |
40517568 |
agagcaactaattgaagttgaagaaccattcttctgaatttgagagtataacagtttcgggtatccttcaaaacttgtgtcggtgtgatgacgaagtcct |
40517667 |
T |
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| Q |
320 |
tgttccatgattgagtcttcatgacgatgtggtggaaaaccagacaaaatattgagaatgtttcgacttcgtgaactacgaagtcgaacacatgcaataa |
419 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40517668 |
tgttccatgattgagtcttcatgacgatgtggtggaaaaccggacaaaatattgagaatgtttcgacttcgtgaactacgaagtcgaacacatgcaataa |
40517767 |
T |
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| Q |
420 |
ctattgaaagaaccaagaatacgagaccaaatacaagtattaagatatatgtgaacccatttgcgtcaaaacc |
492 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40517768 |
ctattgaaagaaccaagaatacgagaccaaatacaagtattaagatatatgtgaacccatttgcgtcaaaacc |
40517840 |
T |
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