View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21320_high_4 (Length: 483)

Name: NF21320_high_4
Description: NF21320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21320_high_4
NF21320_high_4
[»] chr7 (19 HSPs)
chr7 (17-473)||(39622120-39622576)
chr7 (257-468)||(39547529-39547740)
chr7 (278-468)||(39365955-39366145)
chr7 (257-473)||(39564303-39564519)
chr7 (257-473)||(39538066-39538282)
chr7 (278-473)||(39353445-39353640)
chr7 (257-468)||(39338581-39338792)
chr7 (289-468)||(39589357-39589536)
chr7 (289-468)||(39575119-39575298)
chr7 (52-131)||(39589694-39589773)
chr7 (321-468)||(1084865-1085013)
chr7 (55-131)||(39337959-39338035)
chr7 (55-131)||(39564803-39564879)
chr7 (47-148)||(39365601-39365702)
chr7 (47-128)||(39547952-39548033)
chr7 (47-131)||(39538585-39538669)
chr7 (53-107)||(39575481-39575535)
chr7 (296-377)||(42133156-42133237)
chr7 (55-107)||(39349136-39349188)
[»] chr2 (3 HSPs)
chr2 (257-465)||(44223209-44223417)
chr2 (257-377)||(44211135-44211255)
chr2 (257-377)||(44234119-44234239)
[»] chr4 (2 HSPs)
chr4 (269-399)||(2877126-2877256)
chr4 (316-363)||(46451752-46451799)


Alignment Details
Target: chr7 (Bit Score: 445; Significance: 0; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 17 - 473
Target Start/End: Complemental strand, 39622576 - 39622120
Alignment:
Q  17 aaaaatctgtaacggaaaataaacattatgggaagagaggaatgattctttcttttgaaccacactgtatcacctttgatgaagtaacatactcagttga 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  39622576 aaaaatctgtaacggaaaataaacattatgggaagagaggaatgattctttcttttgaaccacactgtatcacctttgatgaagtaacatattcagttga 39622477  T
Q  117 tatgccacaggtaatttataaacacaataaaatgattgagaaacacctgtgtttgttaaattttcatagttatatataagcttactctgaacttgcagga 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  39622476 tatgccacaggtaatttataaacacaataaaatgattgagaaacacctgtgtttgttaaattttcatagttatatataagctcactctgaacttgcagga 39622377  T
Q  217 aatgaagaatcaacgagttgtcggggaaaggttgaacctattgaatggtgtcagtggttcattcagaccggctgttctcacagctctgatgggtgtgact 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39622376 aatgaagaatcaacgagttgtcggggaaaggttgaacctattgaatggtgtcagtggttcattcagaccggctgttctcacagctctgatgggtgtgact 39622277  T
Q  317 ggtgctggcaaaacaactctgatggatgtactagctggaagaaaaaccagaggatatattggtgggaccatcacaatttctggctattcaaagaagcagg 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39622276 ggtgctggcaaaacaactctgatggatgtactagctggaagaaaaaccagaggatatattggtgggaccatcacaatttctggctattcaaagaagcagg 39622177  T
Q  417 aaacctttgcaagagtttgtggatactgtgaacaaaattatatccattctccctatg 473  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  39622176 aaacctttgcaagagtttgtggatactgtgaacaaaattatatccattctccttatg 39622120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 257 - 468
Target Start/End: Complemental strand, 39547740 - 39547529
Alignment:
Q  257 ttgaatggtgtcagtggttcattcagaccggctgttctcacagctctgatgggtgtgactggtgctggcaaaacaactctgatggatgtactagctggaa 356  Q
    ||||| ||||| |||||  | |||||||| | ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||  |||| |    
T  39547740 ttgaagggtgtaagtggagctttcagacctggtgttctcactgctctgatgggtgtgactggtgcaggcaaaacaactctgatggatgtactttctggta 39547641  T
Q  357 gaaaaaccagaggatatattggtgggaccatcacaatttctggctattcaaagaagcaggaaacctttgcaagagtttgtggatactgtgaacaaaatta 456  Q
    |||||||  | |||||||||||||||| ||||||||| ||||||||| |||||||||| || |||||||||||| |||  ||||||||||| |||| | |    
T  39547640 gaaaaactggtggatatattggtgggaacatcacaatatctggctatccaaagaagcaagatacctttgcaagaatttcaggatactgtgagcaaactga 39547541  T
Q  457 tatccattctcc 468  Q
    ||||||||||||    
T  39547540 tatccattctcc 39547529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 278 - 468
Target Start/End: Original strand, 39365955 - 39366145
Alignment:
Q  278 ttcagaccggctgttctcacagctctgatgggtgtgactggtgctggcaaaacaactctgatggatgtactagctggaagaaaaaccagaggatatattg 377  Q
    |||||||| | ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||  |||| ||||||||  | ||||||||||    
T  39365955 ttcagaccaggtgttctcacggctctgatgggtgtgaccggtgctggcaaaacaactctgatggatgtgctttctggtagaaaaactggtggatatattg 39366054  T
Q  378 gtgggaccatcacaatttctggctattcaaagaagcaggaaacctttgcaagagtttgtggatactgtgaacaaaattatatccattctcc 468  Q
    |||||| ||||||||| ||||||||| |||||||||| ||||||||||||||| ||| ||||||||| || |||| | |||||||||||||    
T  39366055 gtgggaacatcacaatatctggctatccaaagaagcaagaaacctttgcaagaatttctggatactgcgagcaaactgatatccattctcc 39366145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 257 - 473
Target Start/End: Complemental strand, 39564519 - 39564303
Alignment:
Q  257 ttgaatggtgtcagtggttcattcagaccggctgttctcacagctctgatgggtgtgactggtgctggcaaaacaactctgatggatgtactagctggaa 356  Q
    ||||| ||||| |||||  | |||||||| | ||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||| ||  |||| |    
T  39564519 ttgaagggtgtaagtggagctttcagacctggtgttctcactgctctaatgggtgtgaccggtgctggcaaaacaactctgatggatgtgctttctggta 39564420  T
Q  357 gaaaaaccagaggatatattggtgggaccatcacaatttctggctattcaaagaagcaggaaacctttgcaagagtttgtggatactgtgaacaaaatta 456  Q
    | |||||| |||||||||||||||||| |||||||||||| |||| | |||||||||| ||||||||||||||| ||| ||| |||||||| |||||| |    
T  39564419 ggaaaaccggaggatatattggtgggaacatcacaatttccggctttccaaagaagcaagaaacctttgcaagaatttctgggtactgtgagcaaaatga 39564320  T
Q  457 tatccattctccctatg 473  Q
    |||||| ||||| ||||    
T  39564319 tatccactctccttatg 39564303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 257 - 473
Target Start/End: Complemental strand, 39538282 - 39538066
Alignment:
Q  257 ttgaatggtgtcagtggttcattcagaccggctgttctcacagctctgatgggtgtgactggtgctggcaaaacaactctgatggatgtactagctggaa 356  Q
    ||||| ||| |||||||  | |||||||| | ||||||||| ||||||||||| || || ||||| ||||||||||||||||||||||| ||  |||| |    
T  39538282 ttgaaaggtctcagtggagctttcagaccaggtgttctcactgctctgatgggcgtcacgggtgcaggcaaaacaactctgatggatgtgctttctggta 39538183  T
Q  357 gaaaaaccagaggatatattggtgggaccatcacaatttctggctattcaaagaagcaggaaacctttgcaagagtttgtggatactgtgaacaaaatta 456  Q
    |||||||  | |||||||||||||||| ||||||||||||||||||| |||||||||| || |||||||||||| |||  ||||||||||| |||| | |    
T  39538182 gaaaaactggtggatatattggtgggaacatcacaatttctggctatccaaagaagcaagatacctttgcaagaatttcaggatactgtgagcaaactga 39538083  T
Q  457 tatccattctccctatg 473  Q
    |||||||||||| ||||    
T  39538082 tatccattctccttatg 39538066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 278 - 473
Target Start/End: Original strand, 39353445 - 39353640
Alignment:
Q  278 ttcagaccggctgttctcacagctctgatgggtgtgactggtgctggcaaaacaactctgatggatgtactagctggaagaaaaaccagaggatatattg 377  Q
    |||||||| | ||||||||| |||||||||||  | ||||||||||| ||||||||||| |||||||| ||  |||| ||||||||| | ||||||||||    
T  39353445 ttcagaccaggtgttctcacggctctgatgggcatcactggtgctggaaaaacaactctaatggatgtgctttctggtagaaaaaccggtggatatattg 39353544  T
Q  378 gtgggaccatcacaatttctggctattcaaagaagcaggaaacctttgcaagagtttgtggatactgtgaacaaaattatatccattctccctatg 473  Q
    |||||| |||||||||||| |||||| |||| ||||| ||||||||||||||| ||| |||||||||||| |||| | ||||||||||||| ||||    
T  39353545 gtgggaacatcacaatttccggctatccaaaaaagcaagaaacctttgcaagaatttctggatactgtgagcaaactgatatccattctccttatg 39353640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 257 - 468
Target Start/End: Original strand, 39338581 - 39338792
Alignment:
Q  257 ttgaatggtgtcagtggttcattcagaccggctgttctcacagctctgatgggtgtgactggtgctggcaaaacaactctgatggatgtactagctggaa 356  Q
    ||||| ||||| |||||  | |||||||| | ||||||||| |||||||||||  | || |||||||| |||||||||||||||||||| ||  |||| |    
T  39338581 ttgaagggtgtaagtggagctttcagaccaggtgttctcaccgctctgatgggcatcaccggtgctgggaaaacaactctgatggatgtgctttctggta 39338680  T
Q  357 gaaaaaccagaggatatattggtgggaccatcacaatttctggctattcaaagaagcaggaaacctttgcaagagtttgtggatactgtgaacaaaatta 456  Q
    |||||||  | |||||||||||||||| ||||| |||||| |||| | |||||||||| ||||||||||||||| ||| |||||||||||| |||| | |    
T  39338681 gaaaaactggtggatatattggtgggaacatcaaaatttccggctttccaaagaagcaagaaacctttgcaagaatttctggatactgtgagcaaactga 39338780  T
Q  457 tatccattctcc 468  Q
    ||||||||||||    
T  39338781 tatccattctcc 39338792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 289 - 468
Target Start/End: Complemental strand, 39589536 - 39589357
Alignment:
Q  289 tgttctcacagctctgatgggtgtgactggtgctggcaaaacaactctgatggatgtactagctggaagaaaaaccagaggatatattggtgggaccatc 388  Q
    ||||||||| ||| | ||||| || || |||||||| ||||| ||| || ||||||| ||  |||| ||||||||  | |||||||||||||||||||||    
T  39589536 tgttctcactgctttaatgggcgtcacgggtgctggaaaaactactttgttggatgtgctttctggtagaaaaactggtggatatattggtgggaccatc 39589437  T
Q  389 acaatttctggctattcaaagaagcaggaaacctttgcaagagtttgtggatactgtgaacaaaattatatccattctcc 468  Q
    ||||||||||| ||| | |||||||| ||||| ||||||||| ||| |||||||||||| |||||| ||||||| |||||    
T  39589436 acaatttctggatatcctaagaagcaagaaacatttgcaagaatttctggatactgtgagcaaaatgatatccactctcc 39589357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 289 - 468
Target Start/End: Complemental strand, 39575298 - 39575119
Alignment:
Q  289 tgttctcacagctctgatgggtgtgactggtgctggcaaaacaactctgatggatgtactagctggaagaaaaaccagaggatatattggtgggaccatc 388  Q
    ||||||||| || || |||||||| ||||||||||||||||||||| ||||||||||||| ||||| || ||||   | ||||||||| |||||| ||||    
T  39575298 tgttctcactgcacttatgggtgtcactggtgctggcaaaacaactttgatggatgtacttgctggtaggaaaagtgggggatatattagtgggaacatc 39575199  T
Q  389 acaatttctggctattcaaagaagcaggaaacctttgcaagagtttgtggatactgtgaacaaaattatatccattctcc 468  Q
    ||| |||| ||  || | || ||||| ||||||||||||||| |||  ||||||||||| |||||| |||| || |||||    
T  39575198 acagtttccgggcatcccaaaaagcaagaaacctttgcaagaatttccggatactgtgagcaaaatgatatacactctcc 39575119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 52 - 131
Target Start/End: Complemental strand, 39589773 - 39589694
Alignment:
Q  52 agaggaatgattctttcttttgaaccacactgtatcacctttgatgaagtaacatactcagttgatatgccacaggtaat 131  Q
    ||||||||| ||||| ||||||||||||| ||| |||||||||||||||||||||| || || || ||||||||||||||    
T  39589773 agaggaatggttcttccttttgaaccacattgtgtcacctttgatgaagtaacatattctgtagacatgccacaggtaat 39589694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 321 - 468
Target Start/End: Complemental strand, 1085013 - 1084865
Alignment:
Q  321 ctggcaaaacaactctgatggatgtactagctggaagaaaaaccagaggatatattggtgggaccatcacaatttctggctattcaaag--aagcaggaa 418  Q
    |||||||||||||| |||||||||| ||  |||| ||||||||    |||||||||||||||| ||||| ||||||||||||| || ||  ||||| |||    
T  1085013 ctggcaaaacaactttgatggatgtgctt-ctggtagaaaaactgatggatatattggtgggaacatcataatttctggctatccatagaaaagcaagaa 1084915  T
Q  419 acctttgcaagagtttgtggatactgtgaacaaaattatatccattctcc 468  Q
    || ||| ||||| ||| |||||||||||| ||||   |||||||||||||    
T  1084914 acatttacaagaatttctggatactgtgagcaaatagatatccattctcc 1084865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 55 - 131
Target Start/End: Original strand, 39337959 - 39338035
Alignment:
Q  55 ggaatgattctttcttttgaaccacactgtatcacctttgatgaagtaacatactcagttgatatgccacaggtaat 131  Q
    |||||| ||||| ||||||||||||| | ||| |||||||||||||| ||||| || || || ||||||||||||||    
T  39337959 ggaatggttcttccttttgaaccacattctataacctttgatgaagttacatattctgtagacatgccacaggtaat 39338035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 55 - 131
Target Start/End: Complemental strand, 39564879 - 39564803
Alignment:
Q  55 ggaatgattctttcttttgaaccacactgtatcacctttgatgaagtaacatactcagttgatatgccacaggtaat 131  Q
    |||||| ||||| ||||||||||||| | ||| |||||||||||||| ||||| || || || ||||||||||||||    
T  39564879 ggaatggttcttccttttgaaccacattctataacctttgatgaagttacatattccgtagacatgccacaggtaat 39564803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 47 - 148
Target Start/End: Original strand, 39365601 - 39365702
Alignment:
Q  47 ggaagagaggaatgattctttcttttgaaccacactgtatcacctttgatgaagtaacatactcagttgatatgccacaggtaatttataaacacaataa 146  Q
    |||| ||||||||| ||||| | ||||||||||| |  |||||||||||||||||  |||| || || || |||||||||||||| || ||||  |||||    
T  39365601 ggaaaagaggaatggttcttccatttgaaccacattcaatcacctttgatgaagtttcatattctgtagacatgccacaggtaatctacaaaccgaataa 39365700  T
Q  147 aa 148  Q
    ||    
T  39365701 aa 39365702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 47 - 128
Target Start/End: Complemental strand, 39548033 - 39547952
Alignment:
Q  47 ggaagagaggaatgattctttcttttgaaccacactgtatcacctttgatgaagtaacatactcagttgatatgccacaggt 128  Q
    |||| ||||||||| ||||  ||||||||||||| |  ||||||||||||||||| ||||| || || || |||||||||||    
T  39548033 ggaaaagaggaatggttctcccttttgaaccacattcaatcacctttgatgaagttacatattctgtagacatgccacaggt 39547952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 47 - 131
Target Start/End: Complemental strand, 39538669 - 39538585
Alignment:
Q  47 ggaagagaggaatgattctttcttttgaaccacactgtatcacctttgatgaagtaacatactcagttgatatgccacaggtaat 131  Q
    |||| ||||||||| ||||| | ||||||||||| |  |||||||||||||||||  |||| || || || ||||||||||||||    
T  39538669 ggaaaagaggaatggttcttccatttgaaccacattcaatcacctttgatgaagtttcatattctgtagacatgccacaggtaat 39538585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 53 - 107
Target Start/End: Complemental strand, 39575535 - 39575481
Alignment:
Q  53 gaggaatgattctttcttttgaaccacactgtatcacctttgatgaagtaacata 107  Q
    |||||||| ||||| ||||||||| ||| | ||| ||||||||||||||||||||    
T  39575535 gaggaatggttcttccttttgaacaacattctataacctttgatgaagtaacata 39575481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 296 - 377
Target Start/End: Complemental strand, 42133237 - 42133156
Alignment:
Q  296 acagctctgatgggtgtgactggtgctggcaaaacaactctgatggatgtactagctggaagaaaaaccagaggatatattg 377  Q
    ||||| || |||||||| | ||||||||| || ||||| || ||||||||| |||| |||||||||||  | ||||||||||    
T  42133237 acagcacttatgggtgtcagtggtgctggaaagacaaccctcatggatgtattagccggaagaaaaacaggtggatatattg 42133156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 55 - 107
Target Start/End: Original strand, 39349136 - 39349188
Alignment:
Q  55 ggaatgattctttcttttgaaccacactgtatcacctttgatgaagtaacata 107  Q
    |||||| ||||| ||||||||||||| | ||| |||||||||||||| |||||    
T  39349136 ggaatggttcttccttttgaaccacattctataacctttgatgaagttacata 39349188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 257 - 465
Target Start/End: Complemental strand, 44223417 - 44223209
Alignment:
Q  257 ttgaatggtgtcagtggttcattcagaccggctgttctcacagctctgatgggtgtgactggtgctggcaaaacaactctgatggatgtactagctggaa 356  Q
    ||||| ||||| |||||| ||||||| || | ||||||||||||| |||||||||| | ||| ||||| |||||||||||||||||||| || ||||| |    
T  44223417 ttgaagggtgttagtggtgcattcaggcccggtgttctcacagctttgatgggtgtaagtggagctggtaaaacaactctgatggatgttctggctggta 44223318  T
Q  357 gaaaaaccagaggatatattggtgggaccatcacaatttctggctattcaaagaagcaggaaacctttgcaagagtttgtggatactgtgaacaaaatta 456  Q
    | |||||  | |||||||||| |||   |||||   ||||||| ||  | || ||||| ||||| ||||| ||| ||| ||| |||||||| || ||| |    
T  44223317 ggaaaacaggtggatatattgatggagacatcaaggtttctgggtaccctaaaaagcaagaaacatttgctagaatttctggctactgtgagcagaatga 44223218  T
Q  457 tatccattc 465  Q
    |||||||||    
T  44223217 tatccattc 44223209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 257 - 377
Target Start/End: Complemental strand, 44211255 - 44211135
Alignment:
Q  257 ttgaatggtgtcagtggttcattcagaccggctgttctcacagctctgatgggtgtgactggtgctggcaaaacaactctgatggatgtactagctggaa 356  Q
    ||||| ||||| || ||| ||||||| || | ||||||||||||| |||||||||| | ||| ||||| |||||||||||||||||||| || ||||| |    
T  44211255 ttgaagggtgttagcggtgcattcaggcccggtgttctcacagctttgatgggtgtaagtggagctggtaaaacaactctgatggatgttctggctggta 44211156  T
Q  357 gaaaaaccagaggatatattg 377  Q
    | |||||  | ||||||||||    
T  44211155 ggaaaacaggtggatatattg 44211135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 257 - 377
Target Start/End: Complemental strand, 44234239 - 44234119
Alignment:
Q  257 ttgaatggtgtcagtggttcattcagaccggctgttctcacagctctgatgggtgtgactggtgctggcaaaacaactctgatggatgtactagctggaa 356  Q
    ||||| ||||| |||||  ||||||| || | ||| || || ||| |||||||||| | ||| ||||| |||||||||||||||||||| || ||||| |    
T  44234239 ttgaagggtgttagtggcgcattcaggcctggtgtacttacggctttgatgggtgtaagtggagctggtaaaacaactctgatggatgttctggctggta 44234140  T
Q  357 gaaaaaccagaggatatattg 377  Q
    | |||||  | ||||||||||    
T  44234139 ggaaaacaggtggatatattg 44234119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 269 - 399
Target Start/End: Original strand, 2877126 - 2877256
Alignment:
Q  269 agtggttcattcagaccggctgttctcacagctctgatgggtgtgactggtgctggcaaaacaactctgatggatgtactagctggaagaaaaaccagag 368  Q
    |||||| |||| ||||| | ||||||||||||| |||||||||| | ||| ||||| ||||| ||| ||||||||||| | ||||| || ||||| || |    
T  2877126 agtggtgcatttagacctggtgttctcacagctttgatgggtgttagtggagctggtaaaactactttgatggatgtattggctggtaggaaaactagtg 2877225  T
Q  369 gatatattggtgggaccatcacaatttctgg 399  Q
    | ||||||| ||||| ||| | |||||||||    
T  2877226 gttatattgatgggagcataaaaatttctgg 2877256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 316 - 363
Target Start/End: Original strand, 46451752 - 46451799
Alignment:
Q  316 tggtgctggcaaaacaactctgatggatgtactagctggaagaaaaac 363  Q
    ||||||||| ||||| ||||||||||||||| ||||||||||||||||    
T  46451752 tggtgctgggaaaaccactctgatggatgtattagctggaagaaaaac 46451799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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