View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21320_high_5 (Length: 469)

Name: NF21320_high_5
Description: NF21320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21320_high_5
NF21320_high_5
[»] chr8 (17 HSPs)
chr8 (17-353)||(2874711-2875043)
chr8 (191-353)||(3160178-3160342)
chr8 (214-353)||(2889387-2889526)
chr8 (17-144)||(2797192-2797318)
chr8 (351-453)||(2874489-2874591)
chr8 (351-451)||(3160464-3160564)
chr8 (352-450)||(2848780-2848878)
chr8 (351-453)||(2889163-2889265)
chr8 (351-453)||(3145597-3145699)
chr8 (50-140)||(3160074-3160164)
chr8 (354-450)||(2797533-2797629)
chr8 (50-155)||(2889545-2889650)
chr8 (261-342)||(2797334-2797417)
chr8 (296-353)||(3145418-3145475)
chr8 (62-168)||(18393355-18393460)
chr8 (54-177)||(13097690-13097813)
chr8 (217-262)||(4416772-4416817)
[»] chr2 (3 HSPs)
chr2 (54-133)||(41849256-41849335)
chr2 (57-170)||(38783557-38783670)
chr2 (53-177)||(26576320-26576443)
[»] chr6 (1 HSPs)
chr6 (77-170)||(2602356-2602448)
[»] chr7 (2 HSPs)
chr7 (55-159)||(11820336-11820440)
chr7 (88-144)||(11816756-11816812)
[»] chr1 (1 HSPs)
chr1 (62-161)||(3387908-3388006)
[»] chr5 (1 HSPs)
chr5 (62-144)||(41815421-41815503)
[»] chr4 (2 HSPs)
chr4 (17-59)||(41594760-41594802)
chr4 (21-65)||(41436366-41436410)


Alignment Details
Target: chr8 (Bit Score: 296; Significance: 1e-166; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 17 - 353
Target Start/End: Complemental strand, 2875043 - 2874711
Alignment:
Q  17 atgaacaaaaagctcatttataatgggacggagggagtataagttttatataggtgttggacaccagtccaaggagtgtcaaaataaaggagaaaaccat 116  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  2875043 atgaacaaaaagcttatttataatgggacggagggagtataagttttatataggtgttggacaccagtccaaggagtgtcaaaataaagaagaaaaccat 2874944  T
Q  117 ttatttagtacacttgtctgacacgtgttgtatgagtgtcataggcgtgtcggagaccgcggcatgcgtaatatatcctagaggtgttcgtgcttcatag 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    ||||||||||||| ||||||||||||    
T  2874943 ttatttagtacacttgtctgacacgtgttgtatgagtgtcataggcgtgtcggagaccgcgacatgcgta----atcctagaggtgtccgtgcttcatag 2874848  T
Q  217 gttagtgacttgtgcaccaatctcatgtgagtacggagataaaagagaggggatggatagtggagaaggcattctgatgtattattagagttggttacta 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2874847 gttagtgacttgtgcaccaatctcatgtgagtacggagataaaagagaggggatggatagtggagaaggcattctgatgtattattagagttggttacta 2874748  T
Q  317 gagtttctctagttatgagcatagtgctctctttagg 353  Q
    ||| ||| |||||||||||||||||||||||||||||    
T  2874747 gagcttcgctagttatgagcatagtgctctctttagg 2874711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 191 - 353
Target Start/End: Original strand, 3160178 - 3160342
Alignment:
Q  191 atcctagaggtgttcgtgcttcataggttagtgacttgtgcaccaatctcatgtgagtacggagataaaagagaggggatggatagtggagaaggcattc 290  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  3160178 atcctagaggtgtccgtgcttcataggttagtgacttgtgcaccaatctcatgtgagtacggagataaaagagaggggatgggtagtggagaaggcattc 3160277  T
Q  291 tgatgtattattagagttggttactagagtt--tctctagttatgagcatagtgctctctttagg 353  Q
    ||| |||||||| ||||||||||||||||||  |||||||||| |||||||||||||||||||||    
T  3160278 tgaagtattattggagttggttactagagtttctctctagttaggagcatagtgctctctttagg 3160342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 214 - 353
Target Start/End: Complemental strand, 2889526 - 2889387
Alignment:
Q  214 taggttagtgacttgtgcaccaatctcatgtgagtacggagataaaagagaggggatggatagtggagaaggcattctgatgtattattagagttggtta 313  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||    
T  2889526 taggttagtgacttgtgcaccaatctcatgtgagtagggagataaaagagaggggatgggtagtggagaaggcattctgaagtattgttagagttggtta 2889427  T
Q  314 ctagagtttctctagttatgagcatagtgctctctttagg 353  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  2889426 ctagagtttctctagttaggagcatagtgctctctttagg 2889387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 17 - 144
Target Start/End: Original strand, 2797192 - 2797318
Alignment:
Q  17 atgaacaaaaagctcatttataatgggacggagggagtataagttttatataggtgttggacaccagtccaaggagtgtcaaaataaaggagaaaaccat 116  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  2797192 atgaacaaaaagctcatttataattggacggagggagtataagtttta-ataggttttggacaccagtccaaggagtgtcaaaataaaggagaaaaccat 2797290  T
Q  117 ttatttagtacacttgtctgacacgtgt 144  Q
    ||||||||||||||||||||||||||||    
T  2797291 ttatttagtacacttgtctgacacgtgt 2797318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 351 - 453
Target Start/End: Complemental strand, 2874591 - 2874489
Alignment:
Q  351 aggtatcttatctgaaactgaaaccgtattgcaggctctgaagtttataaagtatgatacttcctttcccgatgaggataaggaaattgtaggcttgagg 450  Q
    ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2874591 aggtatcttttctgaaactgaaaccgtaatgcaggctctgaagtttataaagtatgatacttcctttcccgatgaggataaggaaattgtaggcttgagg 2874492  T
Q  451 ttt 453  Q
    |||    
T  2874491 ttt 2874489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 351 - 451
Target Start/End: Original strand, 3160464 - 3160564
Alignment:
Q  351 aggtatcttatctgaaactgaaaccgtattgcaggctctgaagtttataaagtatgatacttcctttcccgatgaggataaggaaattgtaggcttgagg 450  Q
    ||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  3160464 aggtatcttttctgaaactgaaaccgtaatacaggctctgaagtttataaagtatgatacttcctttcccgatgaggataaggaaattgttgggttgagg 3160563  T
Q  451 t 451  Q
    |    
T  3160564 t 3160564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 352 - 450
Target Start/End: Complemental strand, 2848878 - 2848780
Alignment:
Q  352 ggtatcttatctgaaactgaaaccgtattgcaggctctgaagtttataaagtatgatacttcctttcccgatgaggataaggaaattgtaggcttgagg 450  Q
    |||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||    
T  2848878 ggtatcttttctgaaactgaaaccgtaatgcaggctctgaactttataaagtatgatacttcctttcccgatgaggatagggaaattgttggcttgagg 2848780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 351 - 453
Target Start/End: Complemental strand, 2889265 - 2889163
Alignment:
Q  351 aggtatcttatctgaaactgaaaccgtattgcaggctctgaagtttataaagtatgatacttcctttcccgatgaggataaggaaattgtaggcttgagg 450  Q
    ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||  ||||||||    
T  2889265 aggtatcttttctgaaactgaaaccgtaatgcaggctctgaagtttataaagtatgaaacttcctttcccgatgaggatagggaaattgttagcttgagg 2889166  T
Q  451 ttt 453  Q
    |||    
T  2889165 ttt 2889163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 351 - 453
Target Start/End: Original strand, 3145597 - 3145699
Alignment:
Q  351 aggtatcttatctgaaactgaaaccgtattgcaggctctgaagtttataaagtatgatacttcctttcccgatgaggataaggaaattgtaggcttgagg 450  Q
    ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||  ||||||||    
T  3145597 aggtatcttttctgaaactgaaaccgtaatgcaggctctgaagtttataaagtatgaaacttcctttcccgatgaggatagggaaattgttagcttgagg 3145696  T
Q  451 ttt 453  Q
    |||    
T  3145697 ttt 3145699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 50 - 140
Target Start/End: Original strand, 3160074 - 3160164
Alignment:
Q  50 ggagtataagttttatataggtgttggacaccagtccaaggagtgtcaaaataaaggagaaaaccatttatttagtacacttgtctgacac 140  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  3160074 ggagtataagttttatataggtgttgggcaccagtccaaggagtgtcaaaataaaggagaaaaacatttatttagtacacttgtcggacac 3160164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 354 - 450
Target Start/End: Original strand, 2797533 - 2797629
Alignment:
Q  354 tatcttatctgaaactgaaaccgtattgcaggctctgaagtttataaagtatgatacttcctttcccgatgaggataaggaaattgtaggcttgagg 450  Q
    |||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||    
T  2797533 tatcttttctgaaactgaaactgtaatgcaggctctgaagtttataaagtatgatacttcctttcccgatgaggatagggaaattgttggcttgagg 2797629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 50 - 155
Target Start/End: Complemental strand, 2889650 - 2889545
Alignment:
Q  50 ggagtataagttttatataggtgttggacaccagtccaaggagtgtcaaaataaaggagaaaaccatttatttagtacacttgtctgacacgtgttgtat 149  Q
    ||||||||||||||||| |||||||||  ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| |||| |||     
T  2889650 ggagtataagttttatagaggtgttgggtaccagtccaaggagtgtcaaaataaaggagaaaaatatttatttagtacacttgtctgacaagtgtcgtac 2889551  T
Q  150 gagtgt 155  Q
    ||||||    
T  2889550 gagtgt 2889545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 261 - 342
Target Start/End: Original strand, 2797334 - 2797417
Alignment:
Q  261 gagaggggatggatagtggagaaggcattctgatgtattattagagttggttactagagtt--tctctagttatgagcatagtg 342  Q
    |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||  |||||||||| ||||||||||    
T  2797334 gagaggggatgggtagtggagaaggcattctgatgtattattagatttggttactagagtttctctctagttaggagcatagtg 2797417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 296 - 353
Target Start/End: Original strand, 3145418 - 3145475
Alignment:
Q  296 tattattagagttggttactagagtttctctagttatgagcatagtgctctctttagg 353  Q
    |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  3145418 tattgttagagttggttactagagtttctctagttaggagcatagtgctctctttagg 3145475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 62 - 168
Target Start/End: Complemental strand, 18393460 - 18393355
Alignment:
Q  62 ttatataggtgttggacaccagtccaaggagtgtcaaaataaaggagaaaaccatttatttagtacacttgtctgacacgtgttgtatgagtgtcatagg 161  Q
    |||||||||||||||||||| | ||| |||||||| || |||||  |||||| | |||||||| ||||| ||  ||||||||| ||| ||||||||||||    
T  18393460 ttatataggtgttggacaccgg-ccagggagtgtcgaagtaaagatgaaaacaaattatttaggacactagttcgacacgtgtcgtacgagtgtcatagg 18393362  T
Q  162 cgtgtcg 168  Q
     ||||||    
T  18393361 agtgtcg 18393355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 54 - 177
Target Start/End: Original strand, 13097690 - 13097813
Alignment:
Q  54 tataagttttatataggtgttggacaccagtccaaggagtgtcaaaataaaggagaaaaccatttatttagtacacttgtctgacacgtgttgtatgagt 153  Q
    ||||||| |||||||||||| | ||||| ||| ||||||||||| | ||||| ||||||    |||||||| | |||| || ||| ||||| ||| ||||    
T  13097690 tataagtgttatataggtgtcgcacaccggtctaaggagtgtcacagtaaagaagaaaatatcttatttaggatacttatccgactcgtgtcgtacgagt 13097789  T
Q  154 gtcataggcgtgtcggagaccgcg 177  Q
    |||||| | |||||||| ||||||    
T  13097790 gtcatatgagtgtcggacaccgcg 13097813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 217 - 262
Target Start/End: Original strand, 4416772 - 4416817
Alignment:
Q  217 gttagtgacttgtgcaccaatctcatgtgagtacggagataaaaga 262  Q
    |||||||||||||||||||||||||| |||||||||  ||||||||    
T  4416772 gttagtgacttgtgcaccaatctcatatgagtacggttataaaaga 4416817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 7e-16; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 54 - 133
Target Start/End: Original strand, 41849256 - 41849335
Alignment:
Q  54 tataagttttatataggtgttggacaccagtccaaggagtgtcaaaataaaggagaaaaccatttatttagtacacttgt 133  Q
    ||||||| |||||||||||| |||||||||||||||||||||| |||||||  ||||||  | |||||||| ||||||||    
T  41849256 tataagtgttatataggtgtcggacaccagtccaaggagtgtcgaaataaaaaagaaaataacttatttaggacacttgt 41849335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 170
Target Start/End: Complemental strand, 38783670 - 38783557
Alignment:
Q  57 aagttttatataggtgttggacaccagtccaaggagtgtcaaaataaaggagaaaaccatttatttagtacacttgtctgacacgtgttgtatgagtgtc 156  Q
    |||| ||||| |||||| ||||||| |||||||||||||| || || |  ||||||  | |||||||  |||||||||| |||| |||  || | |||||    
T  38783670 aagtgttatacaggtgtcggacaccggtccaaggagtgtcgaagtagaaaagaaaataacttatttaagacacttgtctcacacatgtcatacgggtgtc 38783571  T
Q  157 ataggcgtgtcgga 170  Q
    ||||| ||||||||    
T  38783570 ataggagtgtcgga 38783557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 53 - 177
Target Start/End: Original strand, 26576320 - 26576443
Alignment:
Q  53 gtataagttttatataggtgttggacaccagtccaaggagtgtcaaaataaaggagaaaaccatttatttagtacacttgtctgacacgtgttgtatgag 152  Q
    |||| ||| |||||||||||||||| |||  ||  |||||||||||| |||| || |||| || |||||||  ||||  ||  ||||||||| ||| | |    
T  26576320 gtatgagtgttatataggtgttggagaccgatcgtaggagtgtcaaagtaaa-gaaaaaatcaattatttaagacaccggttcgacacgtgtcgtacggg 26576418  T
Q  153 tgtcataggcgtgtcggagaccgcg 177  Q
    ||||||||| |||||||| ||||||    
T  26576419 tgtcataggagtgtcggacaccgcg 26576443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 77 - 170
Target Start/End: Original strand, 2602356 - 2602448
Alignment:
Q  77 acaccagtccaaggagtgtcaaaataaaggagaaaaccatttatttagtacacttgtctgacacgtgttgtatgagtgtcataggcgtgtcgga 170  Q
    ||||| ||||||||||||||||||||||| ||||||| | | |||| |  |||||||| ||||||||| ||||| |||||||||  ||||||||    
T  2602356 acaccggtccaaggagtgtcaaaataaagtagaaaacaactcattttg-gcacttgtccgacacgtgtcgtatgtgtgtcatagcagtgtcgga 2602448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 55 - 159
Target Start/End: Complemental strand, 11820440 - 11820336
Alignment:
Q  55 ataagttttatataggtgttggacaccagtccaaggagtgtcaaaataaaggagaaaaccatttatttagtacacttgtctgacacgtgttgtatgagtg 154  Q
    |||||| |||||||| |||  ||||||  ||| | ||||| |||| ||||| ||||||  | |||||||| ||||||||||||||||||| ||| |||||    
T  11820440 ataagtgttatatagatgtcagacaccgatcctaagagtgacaaagtaaagaagaaaataacttatttagaacacttgtctgacacgtgtcgtacgagtg 11820341  T
Q  155 tcata 159  Q
    |||||    
T  11820340 tcata 11820336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 88 - 144
Target Start/End: Complemental strand, 11816812 - 11816756
Alignment:
Q  88 aggagtgtcaaaataaaggagaaaaccatttatttagtacacttgtctgacacgtgt 144  Q
    ||||||||| |||||||| ||||||  | |||||||| ||||| |||||||||||||    
T  11816812 aggagtgtcgaaataaagaagaaaataacttatttaggacactcgtctgacacgtgt 11816756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 62 - 161
Target Start/End: Original strand, 3387908 - 3388006
Alignment:
Q  62 ttatataggtgttggacaccagtccaaggagtgtcaaaataaaggagaaaaccatttatttagtacacttgtctgacacgtgttgtatgagtgtcatagg 161  Q
    |||||||||||||||||||| | ||| |||||||| || |||||  |||||| | |||||||  ||||| ||| ||||||||| ||| ||||||||||||    
T  3387908 ttatataggtgttggacacc-gaccagggagtgtcgaagtaaagatgaaaacaaattatttaagacactagtccgacacgtgtcgtacgagtgtcatagg 3388006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 62 - 144
Target Start/End: Complemental strand, 41815503 - 41815421
Alignment:
Q  62 ttatataggtgttggacaccagtccaaggagtgtcaaaataaaggagaaaaccatt-tatttagtacacttgtctgacacgtgt 144  Q
    |||||||||||||||||||| ||| ||||||||||  | ||||||| ||||  ||| ||||||  |||||||||||||||||||    
T  41815503 ttatataggtgttggacaccggtcaaaggagtgtccgagtaaagga-aaaataattgtatttaaaacacttgtctgacacgtgt 41815421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 59
Target Start/End: Complemental strand, 41594802 - 41594760
Alignment:
Q  17 atgaacaaaaagctcatttataatgggacggagggagtataag 59  Q
    |||||||||| ||||  ||||||||||||||||||||||||||    
T  41594802 atgaacaaaaggctcgcttataatgggacggagggagtataag 41594760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 21 - 65
Target Start/End: Complemental strand, 41436410 - 41436366
Alignment:
Q  21 acaaaaagctcatttataatgggacggagggagtataagttttat 65  Q
    |||||||||||| |||| |||||||||||||||||| | ||||||    
T  41436410 acaaaaagctcagttattatgggacggagggagtatcaattttat 41436366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University