View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21320_high_8 (Length: 354)

Name: NF21320_high_8
Description: NF21320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21320_high_8
NF21320_high_8
[»] chr1 (2 HSPs)
chr1 (215-335)||(8067422-8067542)
chr1 (22-104)||(8067656-8067738)
[»] chr8 (1 HSPs)
chr8 (42-100)||(12146206-12146264)
[»] chr4 (1 HSPs)
chr4 (42-100)||(44278475-44278533)
[»] chr2 (1 HSPs)
chr2 (24-100)||(36148563-36148638)
[»] chr3 (1 HSPs)
chr3 (42-78)||(27669365-27669401)


Alignment Details
Target: chr1 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 215 - 335
Target Start/End: Complemental strand, 8067542 - 8067422
Alignment:
Q  215 attgatccgaacaacagtacaataaaatatgttaaactaatacacaattaaaaataatagaaaatctacttgacggatgcattatacgatatgaattgta 314  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8067542 attgatccgaacaacagtacaataaaatatgtcaaactaatacacaattaaaaataatagaaaatctacttgacggatgcattatacgatatgaattgta 8067443  T
Q  315 tttatgtaaatgcactaaacc 335  Q
    |||||||||||||||||||||    
T  8067442 tttatgtaaatgcactaaacc 8067422  T

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Target: chr1; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 22 - 104
Target Start/End: Complemental strand, 8067738 - 8067656
Alignment:
Q  22 agaaacaaacaaactgcttaactacaactttaattataattatttttgtcacaatatatatttatatcttaaaaatatgtaag 104  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  8067738 agaaacaaacaaactgcttaactacaactttaattgtaattatttttgtcacaatatatatttatatcttaaaaatatgtaag 8067656  T

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Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 42 - 100
Target Start/End: Original strand, 12146206 - 12146264
Alignment:
Q  42 actacaactttaattataattatttttgtcacaatatatatttatatcttaaaaatatg 100  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  12146206 actacaactttaattgtaattatttttgtcacaatatatatttatatcttaaaaatatg 12146264  T

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Target: chr4 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 42 - 100
Target Start/End: Complemental strand, 44278533 - 44278475
Alignment:
Q  42 actacaactttaattataattatttttgtcacaatatatatttatatcttaaaaatatg 100  Q
    ||||||| ||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  44278533 actacaattttaattgtaattatttttgtcgcaatatatatttatatcttaaaaatatg 44278475  T

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Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 24 - 100
Target Start/End: Complemental strand, 36148638 - 36148563
Alignment:
Q  24 aaacaaacaaactgcttaactacaactttaattataattatttttgtcacaatatatatttatatcttaaaaatatg 100  Q
    |||||||  ||||||| ||||||||||||| || ||||||||||| |||||||||||||||| ||||||||||||||    
T  36148638 aaacaaatgaactgctcaactacaacttta-ttgtaattatttttctcacaatatatatttagatcttaaaaatatg 36148563  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 78
Target Start/End: Original strand, 27669365 - 27669401
Alignment:
Q  42 actacaactttaattataattatttttgtcacaatat 78  Q
    ||||||||||||||| ||||||||||||| |||||||    
T  27669365 actacaactttaattgtaattatttttgttacaatat 27669401  T

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