View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21320_low_1 (Length: 557)

Name: NF21320_low_1
Description: NF21320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21320_low_1
NF21320_low_1
[»] chr3 (3 HSPs)
chr3 (227-547)||(1223834-1224154)
chr3 (18-62)||(1223612-1223656)
chr3 (146-182)||(1223753-1223789)
[»] chr5 (3 HSPs)
chr5 (227-547)||(41962360-41962680)
chr5 (124-182)||(41962254-41962312)
chr5 (18-62)||(41960877-41960921)


Alignment Details
Target: chr3 (Bit Score: 305; Significance: 1e-171; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 227 - 547
Target Start/End: Original strand, 1223834 - 1224154
Alignment:
Q  227 gaagcaaccgccacataatgcatcccttaaccctcttcattctcttctccaccttcatcctcaccgcctccggtgccggtaacatccacctcgacttccc 326  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  1223834 gaagcaaccgccacataatgcatcccttaaccctcttcactctcttctccaccttcatcctcaccgcctccggtgccggtaacatccacctcaacttccc 1223933  T
Q  327 ttactttaccaccgcagacaccgccaccaacctcaccttcctcggcgattcatctctaaccaccaacagcatcgtttccttaactcaacccaccactttc 426  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||    
T  1223934 ttactttaccaccgcagacaccgccaccaacctcaccttcctcggcgattcatctctaaccaccaacggcgtcgtttccttaactcaacccaccactttc 1224033  T
Q  427 tccaccggtgctatcatctacaaacaccccatttctctctttgacatttcaacaaacaccacgtcttcattctcaacaacgttctctttctctattacaa 526  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1224034 tccaccggtgctatcatctacaaacaccccatttctctctttgacatttcaacaaacaccacgtcttcattctcaacaacgttctctttctctattacaa 1224133  T
Q  527 attcaaatcccacttcctttg 547  Q
    |||||||||||||||||||||    
T  1224134 attcaaatcccacttcctttg 1224154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 1223612 - 1223656
Alignment:
Q  18 cttaggagttttagtcttttaccattcaaatcaattcatcattga 62  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  1223612 cttaggagttttagtcttttaccattcaaatcaattcatcattga 1223656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 146 - 182
Target Start/End: Original strand, 1223753 - 1223789
Alignment:
Q  146 gaaacaaactttaactaactattcccgcttcaacaca 182  Q
    |||||||||||||||||||||||||||||||||||||    
T  1223753 gaaacaaactttaactaactattcccgcttcaacaca 1223789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 293; Significance: 1e-164; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 227 - 547
Target Start/End: Original strand, 41962360 - 41962680
Alignment:
Q  227 gaagcaaccgccacataatgcatcccttaaccctcttcattctcttctccaccttcatcctcaccgcctccggtgccggtaacatccacctcgacttccc 326  Q
    ||||||||| |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41962360 gaagcaaccaccacataatgcatcccgtaaccctcttcactctcttctccaccttcatcctcaccgcctccggtgccggtaacatccacctcgacttccc 41962459  T
Q  327 ttactttaccaccgcagacaccgccaccaacctcaccttcctcggcgattcatctctaaccaccaacagcatcgtttccttaactcaacccaccactttc 426  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||||||||||||    
T  41962460 ttacttcaccaccgcagacaccgccaccaacctcaccttcctcggcgattcatctctaaccaccaacggcgtcgtttccttaactcagcccaccactttc 41962559  T
Q  427 tccaccggtgctatcatctacaaacaccccatttctctctttgacatttcaacaaacaccacgtcttcattctcaacaacgttctctttctctattacaa 526  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41962560 tccaccggtgctatcatctacaaacaccccatttctctctttgacatttcaacaaacaccacgtcttcattctcaacaacgttctctttctctattacaa 41962659  T
Q  527 attcaaatcccacttcctttg 547  Q
    |||||||||||||||||||||    
T  41962660 attcaaatcccacttcctttg 41962680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 124 - 182
Target Start/End: Original strand, 41962254 - 41962312
Alignment:
Q  124 ttagtttagaaccgtttaaaccgaaacaaactttaactaactattcccgcttcaacaca 182  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41962254 ttagtttagaaccgtttaaaccgaaacaaactttaactaactattcccgcttcaacaca 41962312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 41960877 - 41960921
Alignment:
Q  18 cttaggagttttagtcttttaccattcaaatcaattcatcattga 62  Q
    ||||||||||||||||||||||||||| |||||||||||||||||    
T  41960877 cttaggagttttagtcttttaccattcgaatcaattcatcattga 41960921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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