View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21320_low_10 (Length: 337)
Name: NF21320_low_10
Description: NF21320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21320_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 17 - 322
Target Start/End: Complemental strand, 43015644 - 43015339
Alignment:
| Q |
17 |
atgaacatgtgtcaaacactagacatatcttcaatcataagtgtcttactgtataatatatgtaacttacttcatcatagctttttcgaaatgggatgaa |
116 |
Q |
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| T |
43015644 |
atgaacatgtgtcaaacactagacatatcttcaatcagaagtgtcttactgtataatatatgtaacttacttcatcatagctttttcgaaatgggatgaa |
43015545 |
T |
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| Q |
117 |
gccaaaatgatcagatttaaggtgttgaatatccaaagcatttgtgaagcttgttaaaggactagggacaccaacaacagcagacatttcatctctatga |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43015544 |
gccaaaatgatcagatttaaggtgttgaatatccaaagcatttgtgaagcttgttaaaggactagggacaccaacaacagcagacatttcatctctatga |
43015445 |
T |
|
| Q |
217 |
atctgagtaacaatttccttagaagaagaacttccacttccactatctcttcttccattgatattataattaggttctccaccacttccttcaccggttg |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
43015444 |
atctgagtaacaatttccttagaagaagaacttccacttccactatctcttcttccattgatattataattaggttctccaccacttccttcaccagttg |
43015345 |
T |
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| Q |
317 |
ttgttg |
322 |
Q |
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|||||| |
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| T |
43015344 |
ttgttg |
43015339 |
T |
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