View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21320_low_13 (Length: 257)
Name: NF21320_low_13
Description: NF21320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21320_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 35307222 - 35307465
Alignment:
| Q |
1 |
aaccaaattatcttgagacccattattgaaaagagcttgatcagaatggaaaagacctttgcttgcaacaaggtttttatagtaattgttgtcaaaactt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
35307222 |
aaccaaattatcttgagacccattattgaaaagagcttgatcagaatggaaaagacctttgcttgcaacaaggtttttatagtaattgttatcaaaactt |
35307321 |
T |
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| Q |
101 |
gttggagtgagagtatcaagaggtgctaaattagtgtcaccaccagaaagaggacaatttgatttccttaaggttgcaaagtttgtgtcaatgttggttt |
200 |
Q |
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|||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35307322 |
gttggagtgagagtatcaagtggtgctaaattggtgtcaccaccagaaagaggacaatttgatttccttaaggttgcaaagtttgtgtcaatgttggttt |
35307421 |
T |
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| Q |
201 |
cattgtatatgcgatttctgaaaaattggcactctccttggcct |
244 |
Q |
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| T |
35307422 |
cattgtatatgcgatttctgaaaaattggcactctccttggcct |
35307465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 35322223 - 35322466
Alignment:
| Q |
1 |
aaccaaattatcttgagacccattattgaaaagagcttgatcagaatggaaaagacctttgcttgcaacaaggtttttatagtaattgttgtcaaaactt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |
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| T |
35322223 |
aaccaaattatcttgagacccattattgaaaagagcttgatcagaatggaaaagacctttgcttgcaacaagatttttatagtaattgttgtcaaaattt |
35322322 |
T |
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| Q |
101 |
gttggagtgagagtatcaagaggtgctaaattagtgtcaccaccagaaagaggacaatttgatttccttaaggttgcaaagtttgtgtcaatgttggttt |
200 |
Q |
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| T |
35322323 |
gttggagtgagagtgtcaagaggtgctaaattggtgtcaccaccagaaagaggacaatttaatttccttaaggttgcaaagtttgtgtcaatgttggttt |
35322422 |
T |
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| Q |
201 |
cattgtatatgcgatttctgaaaaattggcactctccttggcct |
244 |
Q |
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| T |
35322423 |
cattgtatatgcgatttctgaaaaattggcactctccttggcct |
35322466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 35311565 - 35311811
Alignment:
| Q |
1 |
aaccaaattatcttgagacccattattgaaaagagcttgatcagaatggaaaagacctttgcttgcaacaaggtttttatagtaattgttgtcaaaactt |
100 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
35311565 |
aaccaaattatcttgagacccattattgaaaaggacttgatcagaatggaatagacctttgcttgcaacaaggtttttataataattgttgtcaaaactt |
35311664 |
T |
|
| Q |
101 |
gttggagtgagagtatcaagaggtgctaaattagtgtca---ccaccagaaagaggacaatttgatttccttaaggttgcaaagtttgtgtcaatgttgg |
197 |
Q |
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| T |
35311665 |
gttggagtgagagtatcaagtggtgctaaattggtgtcattgtcactagaaaaagaacagttggattttcttaaggttgcgaagtttgtgtcaatgttgg |
35311764 |
T |
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| Q |
198 |
tttcattgtatatgcgatttctgaaaaattggcactctccttggcct |
244 |
Q |
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| T |
35311765 |
tttcattgtatatgcgagttctgaacaatcgacactctccttggcct |
35311811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 25 - 228
Target Start/End: Original strand, 35289448 - 35289651
Alignment:
| Q |
25 |
attgaaaagagcttgatcagaatggaaaagacctttgcttgcaacaaggtttttatagtaattgttgtcaaaacttgttggagtgagagtatcaagaggt |
124 |
Q |
| |
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|||||||||||||||||||||||| | ||| ||||| | |||||||||| ||||||||||||||||||||| | ||||| || || |||||||||| |
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| T |
35289448 |
attgaaaagagcttgatcagaatgaagaagtcctttattagcaacaaggtcattatagtaattgttgtcaaaagtaactggagagacagaatcaagaggt |
35289547 |
T |
|
| Q |
125 |
gctaaattagtgtcaccaccagaaagaggacaatttgatttccttaaggttgcaaagtttgtgtcaatgttggtttcattgtatatgcgatttctgaaaa |
224 |
Q |
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|| ||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||| |
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| T |
35289548 |
gccaaatttatgtcaccaccagaagtaggacaatttgattttcttaaggttgcaaagtttgtgtcaatgttggtttcgttgtatatacgagttctgaaaa |
35289647 |
T |
|
| Q |
225 |
attg |
228 |
Q |
| |
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|||| |
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| T |
35289648 |
attg |
35289651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 25 - 234
Target Start/End: Original strand, 35275336 - 35275545
Alignment:
| Q |
25 |
attgaaaagagcttgatcagaatggaaaagacctttgcttgcaacaaggtttttatagtaattgttgtcaaaacttgttggagtgagagtatcaagaggt |
124 |
Q |
| |
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|||||||||| ||||||||||||| | ||||||||| | |||| ||||| ||||| |||||||||||||| | |||||||||| || ||||| ||| |
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| T |
35275336 |
attgaaaagaacttgatcagaatgtagaagacctttattagcaataaggtccttataataattgttgtcaaatttagttggagtgacagaatcaaagggt |
35275435 |
T |
|
| Q |
125 |
gctaaattagtgtcaccaccagaaagaggacaatttgatttccttaaggttgcaaagtttgtgtcaatgttggtttcattgtatatgcgatttctgaaaa |
224 |
Q |
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|||||||| |||||||||||||| ||| |||||| ||| |||||||| || |||||| |||||||||||| |||||||| ||||||||||||||||| |
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| T |
35275436 |
gctaaattggtgtcaccaccagaggtagggcaatttctttttcttaaggtagccaagtttctgtcaatgttggcttcattgtgtatgcgatttctgaaaa |
35275535 |
T |
|
| Q |
225 |
attggcactc |
234 |
Q |
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|||| ||||| |
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| T |
35275536 |
attgacactc |
35275545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 25 - 244
Target Start/End: Original strand, 35280103 - 35280322
Alignment:
| Q |
25 |
attgaaaagagcttgatcagaatggaaaagacctttgcttgcaacaaggtttttatagtaattgttgtcaaaacttgttggagtgagagtatcaagaggt |
124 |
Q |
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||||||||| ||||||||||||| | ||| ||||| | ||||| || | |||| ||||||||||||||| | |||| || || ||||||||| |
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| T |
35280103 |
attgaaaagtgcttgatcagaattaagaagtcctttattagcaactagatccctataataattgttgtcaaaagtaacaggagagacagaatcaagagga |
35280202 |
T |
|
| Q |
125 |
gctaaattagtgtcaccaccagaaagaggacaatttgatttccttaaggttgcaaagtttgtgtcaatgttggtttcattgtatatgcgatttctgaaaa |
224 |
Q |
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|| ||||| |||||||| |||||||||||||| |||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |
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| T |
35280203 |
gccaaatttgtgtcaccgccagaaagaggacagtttgcttttcttaaggttgcaaagtttgtgtcgatgttggtttcattgtatatgcgatttcggaaaa |
35280302 |
T |
|
| Q |
225 |
attggcactctccttggcct |
244 |
Q |
| |
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|||| || ||| |||||||| |
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| T |
35280303 |
attgacattctgcttggcct |
35280322 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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