View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21320_low_16 (Length: 224)
Name: NF21320_low_16
Description: NF21320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21320_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 20 - 205
Target Start/End: Complemental strand, 52472588 - 52472417
Alignment:
| Q |
20 |
caatgcagtcattagaatgttagaaatggagggtcagaataggggccaggtggagaagtggagaacacaaaggaaaaagtgttggatttgggccctagga |
119 |
Q |
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| T |
52472588 |
caatgtagtcattagaatgttagaaatggagggtcagaataggggccaggtggagaa--------cacaaaggaaaaagtgttggatttgggccctagga |
52472497 |
T |
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| Q |
120 |
agcccaatataaggaaagtatatgtgggaaagttggaaagatgaagaagatatatctactactactagacattgatctattagaag |
205 |
Q |
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| T |
52472496 |
agcccaatataaggaaagtatatgtgggaaagttggaaagatgaagaagatatatct------actagacattgatctattagaag |
52472417 |
T |
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