View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21320_low_4 (Length: 483)

Name: NF21320_low_4
Description: NF21320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21320_low_4
NF21320_low_4
[»] chr7 (19 HSPs)
chr7 (17-473)||(39622120-39622576)
chr7 (257-468)||(39547529-39547740)
chr7 (278-468)||(39365955-39366145)
chr7 (257-473)||(39564303-39564519)
chr7 (257-473)||(39538066-39538282)
chr7 (278-473)||(39353445-39353640)
chr7 (257-468)||(39338581-39338792)
chr7 (289-468)||(39589357-39589536)
chr7 (289-468)||(39575119-39575298)
chr7 (52-131)||(39589694-39589773)
chr7 (321-468)||(1084865-1085013)
chr7 (55-131)||(39337959-39338035)
chr7 (55-131)||(39564803-39564879)
chr7 (47-148)||(39365601-39365702)
chr7 (47-128)||(39547952-39548033)
chr7 (47-131)||(39538585-39538669)
chr7 (53-107)||(39575481-39575535)
chr7 (296-377)||(42133156-42133237)
chr7 (55-107)||(39349136-39349188)
[»] chr2 (3 HSPs)
chr2 (257-465)||(44223209-44223417)
chr2 (257-377)||(44211135-44211255)
chr2 (257-377)||(44234119-44234239)
[»] chr4 (2 HSPs)
chr4 (269-399)||(2877126-2877256)
chr4 (316-363)||(46451752-46451799)


Alignment Details
Target: chr7 (Bit Score: 445; Significance: 0; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 17 - 473
Target Start/End: Complemental strand, 39622576 - 39622120
Alignment:
Q  17 aaaaatctgtaacggaaaataaacattatgggaagagaggaatgattctttcttttgaaccacactgtatcacctttgatgaagtaacatactcagttga 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  39622576 aaaaatctgtaacggaaaataaacattatgggaagagaggaatgattctttcttttgaaccacactgtatcacctttgatgaagtaacatattcagttga 39622477  T
Q  117 tatgccacaggtaatttataaacacaataaaatgattgagaaacacctgtgtttgttaaattttcatagttatatataagcttactctgaacttgcagga 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  39622476 tatgccacaggtaatttataaacacaataaaatgattgagaaacacctgtgtttgttaaattttcatagttatatataagctcactctgaacttgcagga 39622377  T
Q  217 aatgaagaatcaacgagttgtcggggaaaggttgaacctattgaatggtgtcagtggttcattcagaccggctgttctcacagctctgatgggtgtgact 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39622376 aatgaagaatcaacgagttgtcggggaaaggttgaacctattgaatggtgtcagtggttcattcagaccggctgttctcacagctctgatgggtgtgact 39622277  T
Q  317 ggtgctggcaaaacaactctgatggatgtactagctggaagaaaaaccagaggatatattggtgggaccatcacaatttctggctattcaaagaagcagg 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39622276 ggtgctggcaaaacaactctgatggatgtactagctggaagaaaaaccagaggatatattggtgggaccatcacaatttctggctattcaaagaagcagg 39622177  T
Q  417 aaacctttgcaagagtttgtggatactgtgaacaaaattatatccattctccctatg 473  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  39622176 aaacctttgcaagagtttgtggatactgtgaacaaaattatatccattctccttatg 39622120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 257 - 468
Target Start/End: Complemental strand, 39547740 - 39547529
Alignment:
Q  257 ttgaatggtgtcagtggttcattcagaccggctgttctcacagctctgatgggtgtgactggtgctggcaaaacaactctgatggatgtactagctggaa 356  Q
    ||||| ||||| |||||  | |||||||| | ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||  |||| |    
T  39547740 ttgaagggtgtaagtggagctttcagacctggtgttctcactgctctgatgggtgtgactggtgcaggcaaaacaactctgatggatgtactttctggta 39547641  T
Q  357 gaaaaaccagaggatatattggtgggaccatcacaatttctggctattcaaagaagcaggaaacctttgcaagagtttgtggatactgtgaacaaaatta 456  Q
    |||||||  | |||||||||||||||| ||||||||| ||||||||| |||||||||| || |||||||||||| |||  ||||||||||| |||| | |    
T  39547640 gaaaaactggtggatatattggtgggaacatcacaatatctggctatccaaagaagcaagatacctttgcaagaatttcaggatactgtgagcaaactga 39547541  T
Q  457 tatccattctcc 468  Q
    ||||||||||||    
T  39547540 tatccattctcc 39547529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 278 - 468
Target Start/End: Original strand, 39365955 - 39366145
Alignment:
Q  278 ttcagaccggctgttctcacagctctgatgggtgtgactggtgctggcaaaacaactctgatggatgtactagctggaagaaaaaccagaggatatattg 377  Q
    |||||||| | ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||  |||| ||||||||  | ||||||||||    
T  39365955 ttcagaccaggtgttctcacggctctgatgggtgtgaccggtgctggcaaaacaactctgatggatgtgctttctggtagaaaaactggtggatatattg 39366054  T
Q  378 gtgggaccatcacaatttctggctattcaaagaagcaggaaacctttgcaagagtttgtggatactgtgaacaaaattatatccattctcc 468  Q
    |||||| ||||||||| ||||||||| |||||||||| ||||||||||||||| ||| ||||||||| || |||| | |||||||||||||    
T  39366055 gtgggaacatcacaatatctggctatccaaagaagcaagaaacctttgcaagaatttctggatactgcgagcaaactgatatccattctcc 39366145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 257 - 473
Target Start/End: Complemental strand, 39564519 - 39564303
Alignment:
Q  257 ttgaatggtgtcagtggttcattcagaccggctgttctcacagctctgatgggtgtgactggtgctggcaaaacaactctgatggatgtactagctggaa 356  Q
    ||||| ||||| |||||  | |||||||| | ||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||| ||  |||| |    
T  39564519 ttgaagggtgtaagtggagctttcagacctggtgttctcactgctctaatgggtgtgaccggtgctggcaaaacaactctgatggatgtgctttctggta 39564420  T
Q  357 gaaaaaccagaggatatattggtgggaccatcacaatttctggctattcaaagaagcaggaaacctttgcaagagtttgtggatactgtgaacaaaatta 456  Q
    | |||||| |||||||||||||||||| |||||||||||| |||| | |||||||||| ||||||||||||||| ||| ||| |||||||| |||||| |    
T  39564419 ggaaaaccggaggatatattggtgggaacatcacaatttccggctttccaaagaagcaagaaacctttgcaagaatttctgggtactgtgagcaaaatga 39564320  T
Q  457 tatccattctccctatg 473  Q
    |||||| ||||| ||||    
T  39564319 tatccactctccttatg 39564303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 257 - 473
Target Start/End: Complemental strand, 39538282 - 39538066
Alignment:
Q  257 ttgaatggtgtcagtggttcattcagaccggctgttctcacagctctgatgggtgtgactggtgctggcaaaacaactctgatggatgtactagctggaa 356  Q
    ||||| ||| |||||||  | |||||||| | ||||||||| ||||||||||| || || ||||| ||||||||||||||||||||||| ||  |||| |    
T  39538282 ttgaaaggtctcagtggagctttcagaccaggtgttctcactgctctgatgggcgtcacgggtgcaggcaaaacaactctgatggatgtgctttctggta 39538183  T
Q  357 gaaaaaccagaggatatattggtgggaccatcacaatttctggctattcaaagaagcaggaaacctttgcaagagtttgtggatactgtgaacaaaatta 456  Q
    |||||||  | |||||||||||||||| ||||||||||||||||||| |||||||||| || |||||||||||| |||  ||||||||||| |||| | |    
T  39538182 gaaaaactggtggatatattggtgggaacatcacaatttctggctatccaaagaagcaagatacctttgcaagaatttcaggatactgtgagcaaactga 39538083  T
Q  457 tatccattctccctatg 473  Q
    |||||||||||| ||||    
T  39538082 tatccattctccttatg 39538066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 278 - 473
Target Start/End: Original strand, 39353445 - 39353640
Alignment:
Q  278 ttcagaccggctgttctcacagctctgatgggtgtgactggtgctggcaaaacaactctgatggatgtactagctggaagaaaaaccagaggatatattg 377  Q
    |||||||| | ||||||||| |||||||||||  | ||||||||||| ||||||||||| |||||||| ||  |||| ||||||||| | ||||||||||    
T  39353445 ttcagaccaggtgttctcacggctctgatgggcatcactggtgctggaaaaacaactctaatggatgtgctttctggtagaaaaaccggtggatatattg 39353544  T
Q  378 gtgggaccatcacaatttctggctattcaaagaagcaggaaacctttgcaagagtttgtggatactgtgaacaaaattatatccattctccctatg 473  Q
    |||||| |||||||||||| |||||| |||| ||||| ||||||||||||||| ||| |||||||||||| |||| | ||||||||||||| ||||    
T  39353545 gtgggaacatcacaatttccggctatccaaaaaagcaagaaacctttgcaagaatttctggatactgtgagcaaactgatatccattctccttatg 39353640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 257 - 468
Target Start/End: Original strand, 39338581 - 39338792
Alignment:
Q  257 ttgaatggtgtcagtggttcattcagaccggctgttctcacagctctgatgggtgtgactggtgctggcaaaacaactctgatggatgtactagctggaa 356  Q
    ||||| ||||| |||||  | |||||||| | ||||||||| |||||||||||  | || |||||||| |||||||||||||||||||| ||  |||| |    
T  39338581 ttgaagggtgtaagtggagctttcagaccaggtgttctcaccgctctgatgggcatcaccggtgctgggaaaacaactctgatggatgtgctttctggta 39338680  T
Q  357 gaaaaaccagaggatatattggtgggaccatcacaatttctggctattcaaagaagcaggaaacctttgcaagagtttgtggatactgtgaacaaaatta 456  Q
    |||||||  | |||||||||||||||| ||||| |||||| |||| | |||||||||| ||||||||||||||| ||| |||||||||||| |||| | |    
T  39338681 gaaaaactggtggatatattggtgggaacatcaaaatttccggctttccaaagaagcaagaaacctttgcaagaatttctggatactgtgagcaaactga 39338780  T
Q  457 tatccattctcc 468  Q
    ||||||||||||    
T  39338781 tatccattctcc 39338792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 289 - 468
Target Start/End: Complemental strand, 39589536 - 39589357
Alignment:
Q  289 tgttctcacagctctgatgggtgtgactggtgctggcaaaacaactctgatggatgtactagctggaagaaaaaccagaggatatattggtgggaccatc 388  Q
    ||||||||| ||| | ||||| || || |||||||| ||||| ||| || ||||||| ||  |||| ||||||||  | |||||||||||||||||||||    
T  39589536 tgttctcactgctttaatgggcgtcacgggtgctggaaaaactactttgttggatgtgctttctggtagaaaaactggtggatatattggtgggaccatc 39589437  T
Q  389 acaatttctggctattcaaagaagcaggaaacctttgcaagagtttgtggatactgtgaacaaaattatatccattctcc 468  Q
    ||||||||||| ||| | |||||||| ||||| ||||||||| ||| |||||||||||| |||||| ||||||| |||||    
T  39589436 acaatttctggatatcctaagaagcaagaaacatttgcaagaatttctggatactgtgagcaaaatgatatccactctcc 39589357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 289 - 468
Target Start/End: Complemental strand, 39575298 - 39575119
Alignment:
Q  289 tgttctcacagctctgatgggtgtgactggtgctggcaaaacaactctgatggatgtactagctggaagaaaaaccagaggatatattggtgggaccatc 388  Q
    ||||||||| || || |||||||| ||||||||||||||||||||| ||||||||||||| ||||| || ||||   | ||||||||| |||||| ||||    
T  39575298 tgttctcactgcacttatgggtgtcactggtgctggcaaaacaactttgatggatgtacttgctggtaggaaaagtgggggatatattagtgggaacatc 39575199  T
Q  389 acaatttctggctattcaaagaagcaggaaacctttgcaagagtttgtggatactgtgaacaaaattatatccattctcc 468  Q
    ||| |||| ||  || | || ||||| ||||||||||||||| |||  ||||||||||| |||||| |||| || |||||    
T  39575198 acagtttccgggcatcccaaaaagcaagaaacctttgcaagaatttccggatactgtgagcaaaatgatatacactctcc 39575119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 52 - 131
Target Start/End: Complemental strand, 39589773 - 39589694
Alignment:
Q  52 agaggaatgattctttcttttgaaccacactgtatcacctttgatgaagtaacatactcagttgatatgccacaggtaat 131  Q
    ||||||||| ||||| ||||||||||||| ||| |||||||||||||||||||||| || || || ||||||||||||||    
T  39589773 agaggaatggttcttccttttgaaccacattgtgtcacctttgatgaagtaacatattctgtagacatgccacaggtaat 39589694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 321 - 468
Target Start/End: Complemental strand, 1085013 - 1084865
Alignment:
Q  321 ctggcaaaacaactctgatggatgtactagctggaagaaaaaccagaggatatattggtgggaccatcacaatttctggctattcaaag--aagcaggaa 418  Q
    |||||||||||||| |||||||||| ||  |||| ||||||||    |||||||||||||||| ||||| ||||||||||||| || ||  ||||| |||    
T  1085013 ctggcaaaacaactttgatggatgtgctt-ctggtagaaaaactgatggatatattggtgggaacatcataatttctggctatccatagaaaagcaagaa 1084915  T
Q  419 acctttgcaagagtttgtggatactgtgaacaaaattatatccattctcc 468  Q
    || ||| ||||| ||| |||||||||||| ||||   |||||||||||||    
T  1084914 acatttacaagaatttctggatactgtgagcaaatagatatccattctcc 1084865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 55 - 131
Target Start/End: Original strand, 39337959 - 39338035
Alignment:
Q  55 ggaatgattctttcttttgaaccacactgtatcacctttgatgaagtaacatactcagttgatatgccacaggtaat 131  Q
    |||||| ||||| ||||||||||||| | ||| |||||||||||||| ||||| || || || ||||||||||||||    
T  39337959 ggaatggttcttccttttgaaccacattctataacctttgatgaagttacatattctgtagacatgccacaggtaat 39338035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 55 - 131
Target Start/End: Complemental strand, 39564879 - 39564803
Alignment:
Q  55 ggaatgattctttcttttgaaccacactgtatcacctttgatgaagtaacatactcagttgatatgccacaggtaat 131  Q
    |||||| ||||| ||||||||||||| | ||| |||||||||||||| ||||| || || || ||||||||||||||    
T  39564879 ggaatggttcttccttttgaaccacattctataacctttgatgaagttacatattccgtagacatgccacaggtaat 39564803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 47 - 148
Target Start/End: Original strand, 39365601 - 39365702
Alignment:
Q  47 ggaagagaggaatgattctttcttttgaaccacactgtatcacctttgatgaagtaacatactcagttgatatgccacaggtaatttataaacacaataa 146  Q
    |||| ||||||||| ||||| | ||||||||||| |  |||||||||||||||||  |||| || || || |||||||||||||| || ||||  |||||    
T  39365601 ggaaaagaggaatggttcttccatttgaaccacattcaatcacctttgatgaagtttcatattctgtagacatgccacaggtaatctacaaaccgaataa 39365700  T
Q  147 aa 148  Q
    ||    
T  39365701 aa 39365702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 47 - 128
Target Start/End: Complemental strand, 39548033 - 39547952
Alignment:
Q  47 ggaagagaggaatgattctttcttttgaaccacactgtatcacctttgatgaagtaacatactcagttgatatgccacaggt 128  Q
    |||| ||||||||| ||||  ||||||||||||| |  ||||||||||||||||| ||||| || || || |||||||||||    
T  39548033 ggaaaagaggaatggttctcccttttgaaccacattcaatcacctttgatgaagttacatattctgtagacatgccacaggt 39547952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 47 - 131
Target Start/End: Complemental strand, 39538669 - 39538585
Alignment:
Q  47 ggaagagaggaatgattctttcttttgaaccacactgtatcacctttgatgaagtaacatactcagttgatatgccacaggtaat 131  Q
    |||| ||||||||| ||||| | ||||||||||| |  |||||||||||||||||  |||| || || || ||||||||||||||    
T  39538669 ggaaaagaggaatggttcttccatttgaaccacattcaatcacctttgatgaagtttcatattctgtagacatgccacaggtaat 39538585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 53 - 107
Target Start/End: Complemental strand, 39575535 - 39575481
Alignment:
Q  53 gaggaatgattctttcttttgaaccacactgtatcacctttgatgaagtaacata 107  Q
    |||||||| ||||| ||||||||| ||| | ||| ||||||||||||||||||||    
T  39575535 gaggaatggttcttccttttgaacaacattctataacctttgatgaagtaacata 39575481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 296 - 377
Target Start/End: Complemental strand, 42133237 - 42133156
Alignment:
Q  296 acagctctgatgggtgtgactggtgctggcaaaacaactctgatggatgtactagctggaagaaaaaccagaggatatattg 377  Q
    ||||| || |||||||| | ||||||||| || ||||| || ||||||||| |||| |||||||||||  | ||||||||||    
T  42133237 acagcacttatgggtgtcagtggtgctggaaagacaaccctcatggatgtattagccggaagaaaaacaggtggatatattg 42133156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 55 - 107
Target Start/End: Original strand, 39349136 - 39349188
Alignment:
Q  55 ggaatgattctttcttttgaaccacactgtatcacctttgatgaagtaacata 107  Q
    |||||| ||||| ||||||||||||| | ||| |||||||||||||| |||||    
T  39349136 ggaatggttcttccttttgaaccacattctataacctttgatgaagttacata 39349188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 257 - 465
Target Start/End: Complemental strand, 44223417 - 44223209
Alignment:
Q  257 ttgaatggtgtcagtggttcattcagaccggctgttctcacagctctgatgggtgtgactggtgctggcaaaacaactctgatggatgtactagctggaa 356  Q
    ||||| ||||| |||||| ||||||| || | ||||||||||||| |||||||||| | ||| ||||| |||||||||||||||||||| || ||||| |    
T  44223417 ttgaagggtgttagtggtgcattcaggcccggtgttctcacagctttgatgggtgtaagtggagctggtaaaacaactctgatggatgttctggctggta 44223318  T
Q  357 gaaaaaccagaggatatattggtgggaccatcacaatttctggctattcaaagaagcaggaaacctttgcaagagtttgtggatactgtgaacaaaatta 456  Q
    | |||||  | |||||||||| |||   |||||   ||||||| ||  | || ||||| ||||| ||||| ||| ||| ||| |||||||| || ||| |    
T  44223317 ggaaaacaggtggatatattgatggagacatcaaggtttctgggtaccctaaaaagcaagaaacatttgctagaatttctggctactgtgagcagaatga 44223218  T
Q  457 tatccattc 465  Q
    |||||||||    
T  44223217 tatccattc 44223209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 257 - 377
Target Start/End: Complemental strand, 44211255 - 44211135
Alignment:
Q  257 ttgaatggtgtcagtggttcattcagaccggctgttctcacagctctgatgggtgtgactggtgctggcaaaacaactctgatggatgtactagctggaa 356  Q
    ||||| ||||| || ||| ||||||| || | ||||||||||||| |||||||||| | ||| ||||| |||||||||||||||||||| || ||||| |    
T  44211255 ttgaagggtgttagcggtgcattcaggcccggtgttctcacagctttgatgggtgtaagtggagctggtaaaacaactctgatggatgttctggctggta 44211156  T
Q  357 gaaaaaccagaggatatattg 377  Q
    | |||||  | ||||||||||    
T  44211155 ggaaaacaggtggatatattg 44211135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 257 - 377
Target Start/End: Complemental strand, 44234239 - 44234119
Alignment:
Q  257 ttgaatggtgtcagtggttcattcagaccggctgttctcacagctctgatgggtgtgactggtgctggcaaaacaactctgatggatgtactagctggaa 356  Q
    ||||| ||||| |||||  ||||||| || | ||| || || ||| |||||||||| | ||| ||||| |||||||||||||||||||| || ||||| |    
T  44234239 ttgaagggtgttagtggcgcattcaggcctggtgtacttacggctttgatgggtgtaagtggagctggtaaaacaactctgatggatgttctggctggta 44234140  T
Q  357 gaaaaaccagaggatatattg 377  Q
    | |||||  | ||||||||||    
T  44234139 ggaaaacaggtggatatattg 44234119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 269 - 399
Target Start/End: Original strand, 2877126 - 2877256
Alignment:
Q  269 agtggttcattcagaccggctgttctcacagctctgatgggtgtgactggtgctggcaaaacaactctgatggatgtactagctggaagaaaaaccagag 368  Q
    |||||| |||| ||||| | ||||||||||||| |||||||||| | ||| ||||| ||||| ||| ||||||||||| | ||||| || ||||| || |    
T  2877126 agtggtgcatttagacctggtgttctcacagctttgatgggtgttagtggagctggtaaaactactttgatggatgtattggctggtaggaaaactagtg 2877225  T
Q  369 gatatattggtgggaccatcacaatttctgg 399  Q
    | ||||||| ||||| ||| | |||||||||    
T  2877226 gttatattgatgggagcataaaaatttctgg 2877256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 316 - 363
Target Start/End: Original strand, 46451752 - 46451799
Alignment:
Q  316 tggtgctggcaaaacaactctgatggatgtactagctggaagaaaaac 363  Q
    ||||||||| ||||| ||||||||||||||| ||||||||||||||||    
T  46451752 tggtgctgggaaaaccactctgatggatgtattagctggaagaaaaac 46451799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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