View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21320_low_9 (Length: 346)
Name: NF21320_low_9
Description: NF21320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21320_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 118; Significance: 4e-60; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 50 - 167
Target Start/End: Complemental strand, 30524778 - 30524661
Alignment:
| Q |
50 |
aaatgagctgtagagagagtggaaatctagctggtagtagaaacaacaaactctcctctccttctcaccctcttcctacttcactattttacttcttaaa |
149 |
Q |
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| T |
30524778 |
aaatgagctgtagagagagtggaaatctagctggtagtagaaacaacaaactctcctctccttctcaccctcttcctacttcactattttacttcttaaa |
30524679 |
T |
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| Q |
150 |
tcctataaatacatcaaa |
167 |
Q |
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|||||||||||||||||| |
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| T |
30524678 |
tcctataaatacatcaaa |
30524661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 240 - 334
Target Start/End: Complemental strand, 30524586 - 30524492
Alignment:
| Q |
240 |
cctataaccaacctttctactcactcacatactaaacatggaaattaccactttgtttttctactttgcttcttttctcttcattgttctgttca |
334 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30524586 |
cctataaccaacctttctactcactcacatactaaacatggaaattaccactttgtttttctactttgcttcttttctcttcattgttctgttca |
30524492 |
T |
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