View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21321_high_23 (Length: 255)
Name: NF21321_high_23
Description: NF21321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21321_high_23 |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 9 - 239
Target Start/End: Original strand, 34762419 - 34762649
Alignment:
| Q |
9 |
acatcatcacctttcaatatttgtccatgtgggcctggtacttgtagatcaaaacactgaataattgatgaaagtagtgttgccattcctgctgttgcca |
108 |
Q |
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| T |
34762419 |
acatcatcacctttcaatatttgtccatgtgggcctggtacttgtagatcaaaacactgaataattgatgaaagtagtgttgccattcctgctgttgcca |
34762518 |
T |
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| Q |
109 |
aattgactccaggacacatccttcttccggacccaaatggtagaagtgtgaaatgttgacccctaagatcaattgcagctgcttcaccttcaccttggct |
208 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
34762519 |
aattgactccaggacacatccttcttccagacccaaatggtagaagtgtgaaatgttgacccctaagatcaattgaagctgcttcaccttcaccttggct |
34762618 |
T |
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| Q |
209 |
tgcattttctaagaacctctctggacgaaat |
239 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
34762619 |
tgcattttctaagaacctctctggacgaaat |
34762649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 10 - 202
Target Start/End: Original strand, 34754441 - 34754633
Alignment:
| Q |
10 |
catcatcacctttcaatatttgtccatgtgggcctggtacttgtagatcaaaacactgaataattgatgaaagtagtgttgccattcctgctgttgccaa |
109 |
Q |
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| T |
34754441 |
catcatcacctttcaatatttgtccttgtgggcctggtacctgcagatcaaagcactggataatagatgcaagcagtgtggccattcctgcagtagccaa |
34754540 |
T |
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| Q |
110 |
attgactccaggacacatccttcttccggacccaaatggtagaagtgtgaaatgttgacccctaagatcaattgcagctgcttcaccttcacc |
202 |
Q |
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| T |
34754541 |
attgactccaggacacattctccttccggacccaaatggtagaagttggaaatgctgacccctaagatcaattgaagctgcttcaccttcacc |
34754633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 14 - 239
Target Start/End: Complemental strand, 34781764 - 34781545
Alignment:
| Q |
14 |
atcacctttcaatatttgtccatgtgggcctggtacttgtagatcaaaacactgaataattgatgaaagtagtgttgccattcctgctgttgccaaattg |
113 |
Q |
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|||||| |||||||||| ||||||| | || |||||||| ||||| || || || ||||| |||| || | ||| ||||||||||| || ||||||||| |
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| T |
34781764 |
atcaccattcaatatttctccatgttgaccaggtacttggagatcgaagcattggataatagatgcaatcattgtggccattcctgcagtagccaaattg |
34781665 |
T |
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| Q |
114 |
actccaggacacatccttcttccggacccaaatggtagaagtgtgaaatgttgacccctaagatcaattgcagctgcttcaccttcaccttggcttgcat |
213 |
Q |
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| T |
34781664 |
actccaggacacatccttcttccagacccaaatggtagaagtgtgaaatgttgacccctaagatcaattgaagctgcttcaccttcacc------aacat |
34781571 |
T |
|
| Q |
214 |
tttctaagaacctctctggacgaaat |
239 |
Q |
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|||||| ||||||||||||||||||| |
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| T |
34781570 |
tttctatgaacctctctggacgaaat |
34781545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 196
Target Start/End: Complemental strand, 23244718 - 23244639
Alignment:
| Q |
117 |
ccaggacacatccttcttccggacccaaatggtagaagtgtgaaatgttgacccctaagatcaattgcagctgcttcacc |
196 |
Q |
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||||||||||| |||||||| || ||||||||||||||| |||||||| ||||||| |||||||| | || ||||||| |
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| T |
23244718 |
ccaggacacattcttcttccagatccaaatggtagaagttgaaaatgttgtcccctaacatcaattgaatctccttcacc |
23244639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 148
Target Start/End: Original strand, 9381242 - 9381276
Alignment:
| Q |
114 |
actccaggacacatccttcttccggacccaaatgg |
148 |
Q |
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| T |
9381242 |
actccaggacacatccttcttcctgacccaaatgg |
9381276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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