View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21321_high_3 (Length: 598)
Name: NF21321_high_3
Description: NF21321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21321_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 492; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 1 - 580
Target Start/End: Original strand, 36657680 - 36658265
Alignment:
| Q |
1 |
aatgtttgtgaagcactttatatggtcgaaactttaagtctcttatagttggttgtactaccctctaatgatagattcattagtaagaaatgagtagaca |
100 |
Q |
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| T |
36657680 |
aatgtttgtgaagcactttatatggtcgaaactttaagtctcttatagttggttgtactaccctctaatgatagattcattagtaagaaatgagtggaca |
36657779 |
T |
|
| Q |
101 |
aatttttatatctaggatgagacaatgtcgaatgaaatgatgacattgttttgacaagtttcatgttttaaaaatggaattgttaacattaaacttctct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36657780 |
aatttttatatctaggatgagacaatgtcgaatgaaatgatgacattgttttgacaagtttcatgttttaaaaatggaattgttaacattaaacttctct |
36657879 |
T |
|
| Q |
201 |
gtggttgagtttgattattccagacaaatggtatcatgtttgtctacacttacatcataaaccacacatatcttattcacgttttgctttaaagatcgct |
300 |
Q |
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| T |
36657880 |
gtggttgagtttgattatcccagacaaatggtatcatgtttgtctacacttacatcataaaccacacatatcttattcacgttttgctttaaagatcgct |
36657979 |
T |
|
| Q |
301 |
tttggtgttgagaaatcacagtattgcggat--gnnnnnnnnnngaatacataagaacttcattatagaaatttgcggtaaccaaaataattactaaata |
398 |
Q |
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||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36657980 |
tttggtgttgagaaatcacagtattgcggatgagaaaaaaaaaaaaatacataagaacttcattatagaaatttgcggtaaccaaaataattactaaata |
36658079 |
T |
|
| Q |
399 |
ataatatacatatgctatttagaggtatatatcgtcactacattttaggtctatnnnnnnnngaacctttgccttgtaattgtttacatgctggagagca |
498 |
Q |
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| T |
36658080 |
ataatatacatatgctatttagaggtatatatcgtcactacattttaggtctataaaataaagaacctttgccttgtaattgtttacatgctggagagca |
36658179 |
T |
|
| Q |
499 |
tgcatcttggcaaagtgaatcttctgcaaatttgattttcaagcatatggacatgcattg----ttgcttacattcgggtaacgac |
580 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
36658180 |
tgcatcttggcaaagtgaatcttctgcaaatttgattttcaagcatatggacatgcattgttgcttgcttacattcgggtaacgac |
36658265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 66; Significance: 7e-29; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 462 - 567
Target Start/End: Original strand, 13032290 - 13032395
Alignment:
| Q |
462 |
aacctttgccttgtaattgtttacatgctggagagcatgcatcttggcaaagtgaatcttctgcaaatttgattttcaagcatatggacatgcattgttg |
561 |
Q |
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|||||||||||| ||||||||||||||||||||||| || ||||| ||||||||| ||| ||||| |||||||||||||||||| |||||||||||||| |
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| T |
13032290 |
aacctttgcctttcaattgtttacatgctggagagcaagcttcttgacaaagtgaaacttgtgcaagtttgattttcaagcatatagacatgcattgttg |
13032389 |
T |
|
| Q |
562 |
cttaca |
567 |
Q |
| |
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||||| |
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|
| T |
13032390 |
tttaca |
13032395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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