View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21321_high_32 (Length: 237)

Name: NF21321_high_32
Description: NF21321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21321_high_32
NF21321_high_32
[»] chr3 (18 HSPs)
chr3 (19-221)||(49786829-49787033)
chr3 (161-228)||(40793203-40793270)
chr3 (136-218)||(4489857-4489939)
chr3 (154-228)||(28939697-28939771)
chr3 (132-217)||(35424134-35424219)
chr3 (134-217)||(1995580-1995663)
chr3 (157-228)||(11467227-11467298)
chr3 (154-209)||(49644383-49644438)
chr3 (132-209)||(35496109-35496186)
chr3 (134-221)||(36177221-36177308)
chr3 (180-221)||(29096158-29096199)
chr3 (133-221)||(45266880-45266969)
chr3 (133-217)||(15877760-15877844)
chr3 (133-217)||(35846159-35846243)
chr3 (183-221)||(7352127-7352165)
chr3 (180-221)||(14898467-14898508)
chr3 (184-217)||(52313937-52313970)
chr3 (184-217)||(53464347-53464380)
[»] chr2 (17 HSPs)
chr2 (133-217)||(9104573-9104657)
chr2 (132-217)||(18565751-18565836)
chr2 (133-221)||(40095798-40095886)
chr2 (153-227)||(14657513-14657587)
chr2 (136-209)||(32914478-32914551)
chr2 (133-221)||(4897248-4897336)
chr2 (133-221)||(4944642-4944730)
chr2 (137-217)||(39375719-39375799)
chr2 (182-228)||(3384731-3384777)
chr2 (134-172)||(37258158-37258196)
chr2 (157-221)||(8322179-8322243)
chr2 (155-221)||(5147128-5147194)
chr2 (133-198)||(37069932-37069997)
chr2 (134-218)||(3739874-3739958)
chr2 (133-217)||(6858994-6859078)
chr2 (149-209)||(29984902-29984962)
chr2 (181-221)||(33386719-33386759)
[»] scaffold0015 (1 HSPs)
scaffold0015 (134-217)||(56599-56682)
[»] chr4 (15 HSPs)
chr4 (155-221)||(38567974-38568040)
chr4 (136-221)||(41377389-41377474)
chr4 (136-221)||(55875849-55875934)
chr4 (133-217)||(23560017-23560101)
chr4 (134-221)||(5415180-5415267)
chr4 (133-217)||(779897-779981)
chr4 (181-228)||(7907407-7907454)
chr4 (180-227)||(43355013-43355060)
chr4 (154-221)||(46382024-46382091)
chr4 (136-209)||(52327028-52327101)
chr4 (180-228)||(34388850-34388898)
chr4 (154-217)||(55876020-55876083)
chr4 (180-214)||(9268381-9268415)
chr4 (132-193)||(43264456-43264517)
chr4 (134-221)||(48262993-48263084)
[»] chr8 (10 HSPs)
chr8 (132-217)||(40278976-40279061)
chr8 (134-221)||(11425490-11425577)
chr8 (181-221)||(27594274-27594314)
chr8 (181-221)||(35158923-35158963)
chr8 (132-217)||(1156284-1156369)
chr8 (182-218)||(34954345-34954381)
chr8 (153-209)||(37479212-37479268)
chr8 (134-217)||(17312863-17312945)
chr8 (180-214)||(9682374-9682408)
chr8 (133-217)||(18227011-18227095)
[»] chr1 (13 HSPs)
chr1 (136-217)||(7900161-7900242)
chr1 (133-217)||(1035747-1035831)
chr1 (157-217)||(19322831-19322891)
chr1 (133-217)||(37457626-37457710)
chr1 (180-221)||(26707131-26707172)
chr1 (132-221)||(51613256-51613345)
chr1 (129-221)||(10574370-10574462)
chr1 (133-217)||(19993387-19993471)
chr1 (133-217)||(50428489-50428573)
chr1 (134-217)||(43496401-43496484)
chr1 (180-214)||(46823646-46823680)
chr1 (136-221)||(47394377-47394462)
chr1 (133-217)||(23571018-23571102)
[»] chr6 (6 HSPs)
chr6 (133-221)||(2844143-2844231)
chr6 (154-228)||(10682508-10682582)
chr6 (133-214)||(13685397-13685478)
chr6 (133-203)||(30775353-30775423)
chr6 (181-221)||(19763591-19763631)
chr6 (180-228)||(19789280-19789328)
[»] chr7 (13 HSPs)
chr7 (137-228)||(29681415-29681506)
chr7 (134-221)||(44396395-44396482)
chr7 (134-218)||(43692561-43692645)
chr7 (134-218)||(49081247-49081331)
chr7 (154-221)||(43598833-43598900)
chr7 (136-209)||(48252907-48252980)
chr7 (161-221)||(36725798-36725858)
chr7 (155-221)||(36118058-36118124)
chr7 (134-218)||(38346409-38346494)
chr7 (136-217)||(49080771-49080851)
chr7 (154-221)||(12879278-12879345)
chr7 (181-217)||(8404797-8404833)
chr7 (177-217)||(37626915-37626955)
[»] chr5 (7 HSPs)
chr5 (155-221)||(14593889-14593955)
chr5 (133-228)||(39060199-39060294)
chr5 (180-228)||(4925116-4925164)
chr5 (133-217)||(34769580-34769664)
chr5 (156-217)||(34383710-34383771)
chr5 (180-221)||(35470332-35470373)
chr5 (181-217)||(9959328-9959364)
[»] scaffold0110 (2 HSPs)
scaffold0110 (133-198)||(13803-13868)
scaffold0110 (133-198)||(21540-21605)


Alignment Details
Target: chr3 (Bit Score: 169; Significance: 9e-91; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 19 - 221
Target Start/End: Original strand, 49786829 - 49787033
Alignment:
Q  19 atatcagtgttctcttttctagcttactactcatttccctttgccaaattattaatcgtatcttgtt-agagcaac-acatggtccacatccatgccacc 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||||| ||||||||| |||||||||||||    
T  49786829 atatcagtgttctcttttctagcttactactcatttccctttgccaaattattaattgtatcttttttagagcaaccacatggtccccatccatgccacc 49786928  T
Q  117 catatgataatgataagtggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaata 216  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  49786929 catatgataatgatgagtggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactatattttataaata 49787028  T
Q  217 ttcat 221  Q
    |||||    
T  49787029 ttcat 49787033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 161 - 228
Target Start/End: Original strand, 40793203 - 40793270
Alignment:
Q  161 ttatattatttcttacatctcaattatttaaaccactcaactacattttataaatattcatctcactc 228  Q
    |||||||| |||| || | |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  40793203 ttatattacttctcacttttcaattatttaaaccactcaactacattttataaatattcatatcactc 40793270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 136 - 218
Target Start/End: Complemental strand, 4489939 - 4489857
Alignment:
Q  136 gtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatatt 218  Q
    ||||||||||||| ||||||||||||||||||||||  || ||  |||||||||| ||||||||| || ||||||||||||||    
T  4489939 gtataaatgggacacatataatatattatattattttatatattccaattatttataccactcaattatattttataaatatt 4489857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 154 - 228
Target Start/End: Original strand, 28939697 - 28939771
Alignment:
Q  154 taatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatattcatctcactc 228  Q
    ||||||||||||||| |||  || |||||||||||||||| ||||||||||||||| ||||||||||| ||||||    
T  28939697 taatatattatattacttcacacttctcaattatttaaactactcaactacattttctaaatattcatatcactc 28939771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 132 - 217
Target Start/End: Original strand, 35424134 - 35424219
Alignment:
Q  132 agtggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatat 217  Q
    ||||||||||||||| |||| |||||| ||||||||| |||  |  | |||||||||||||||||||||||||||||| |||||||    
T  35424134 agtggtataaatgggtctcacataatacattatattacttcacatttttcaattatttaaaccactcaactacattttctaaatat 35424219  T

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Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 134 - 217
Target Start/End: Original strand, 1995580 - 1995663
Alignment:
Q  134 tggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatat 217  Q
    ||||||||||||| | || |||||| ||||||||| |||  || || ||||||||||||||||| ||||||||||| |||||||    
T  1995580 tggtataaatgggtcccacataatacattatattacttcacacttcccaattatttaaaccacttaactacattttctaaatat 1995663  T

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Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 157 - 228
Target Start/End: Original strand, 11467227 - 11467298
Alignment:
Q  157 tatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatattcatctcactc 228  Q
    |||||||||||| |||  || |||||||||||||||||| ||||||||||||| ||||||| ||| ||||||    
T  11467227 tatattatattacttcacacttctcaattatttaaaccaatcaactacattttctaaatatccatatcactc 11467298  T

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Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 154 - 209
Target Start/End: Complemental strand, 49644438 - 49644383
Alignment:
Q  154 taatatattatattatttcttacatctcaattatttaaaccactcaactacatttt 209  Q
    ||||||||||||||| |||  || ||||||||||||||||||||||||||||||||    
T  49644438 taatatattatattacttcacacttctcaattatttaaaccactcaactacatttt 49644383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 132 - 209
Target Start/End: Original strand, 35496109 - 35496186
Alignment:
Q  132 agtggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacatttt 209  Q
    ||||||||||||||| |  | |||||||||||||||| |||  || ||||||||||||||| || |||||||||||||    
T  35496109 agtggtataaatgggtcctacataatatattatattacttcacacttctcaattatttaaatcattcaactacatttt 35496186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 221
Target Start/End: Complemental strand, 36177308 - 36177221
Alignment:
Q  134 tggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatattcat 221  Q
    ||||||||||||| | || |||||| ||||||||| |||  || |  ||||||||| ||||||||| ||||||||| |||||||||||    
T  36177308 tggtataaatgggtcccacataatagattatattacttcacactttccaattatttgaaccactcatctacattttttaaatattcat 36177221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 180 - 221
Target Start/End: Original strand, 29096158 - 29096199
Alignment:
Q  180 tcaattatttaaaccactcaactacattttataaatattcat 221  Q
    |||||||||||||||||||||||||||| | |||||||||||    
T  29096158 tcaattatttaaaccactcaactacattatttaaatattcat 29096199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 221
Target Start/End: Complemental strand, 45266969 - 45266880
Alignment:
Q  133 gtggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaacta-cattttataaatattcat 221  Q
    |||||||||||||| | ||   |||| |||||||||||||  || ||||||| |||||||||||| ||||| |||||| |||||||||||    
T  45266969 gtggtataaatgggtcacaccgaatacattatattatttcacacttctcaatcatttaaaccactaaactagcattttctaaatattcat 45266880  T

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Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 217
Target Start/End: Original strand, 15877760 - 15877844
Alignment:
Q  133 gtggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatat 217  Q
    |||||||||||||| | || |||||| ||||||||| |||  |  | || ||||||||||||||||||||| ||||| |||||||    
T  15877760 gtggtataaatgggtcccacataatacattatattacttcacatttttccattatttaaaccactcaactatattttctaaatat 15877844  T

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Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 217
Target Start/End: Original strand, 35846159 - 35846243
Alignment:
Q  133 gtggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatat 217  Q
    |||| ||||||||| ||||  |||||  |||||||||||   || | |||||||||||||||| ||||||||||||| |||||||    
T  35846159 gtggaataaatgggtctcacgtaatactttatattattttacacttttcaattatttaaaccattcaactacattttctaaatat 35846243  T

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Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 221
Target Start/End: Complemental strand, 7352165 - 7352127
Alignment:
Q  183 attatttaaaccactcaactacattttataaatattcat 221  Q
    ||||||||||||| ||||||||||||| |||||||||||    
T  7352165 attatttaaaccattcaactacattttttaaatattcat 7352127  T

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Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 221
Target Start/End: Complemental strand, 14898508 - 14898467
Alignment:
Q  180 tcaattatttaaaccactcaactacattttataaatattcat 221  Q
    |||||| ||||||||||| ||||||||||| |||||||||||    
T  14898508 tcaattgtttaaaccactaaactacattttctaaatattcat 14898467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 217
Target Start/End: Original strand, 52313937 - 52313970
Alignment:
Q  184 ttatttaaaccactcaactacattttataaatat 217  Q
    |||||||||||||||||||||||||| |||||||    
T  52313937 ttatttaaaccactcaactacattttctaaatat 52313970  T

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Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 217
Target Start/End: Original strand, 53464347 - 53464380
Alignment:
Q  184 ttatttaaaccactcaactacattttataaatat 217  Q
    |||||||||||||||||||||||||| |||||||    
T  53464347 ttatttaaaccactcaactacattttctaaatat 53464380  T

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Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 133 - 217
Target Start/End: Original strand, 9104573 - 9104657
Alignment:
Q  133 gtggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatat 217  Q
    |||||||||||||| ||||| |||||| ||||||||||||  |  |||||||||||||||||||||||||||||||| |||||||    
T  9104573 gtggtataaatgggtctcatctaatattttatattatttcacaattctcaattatttaaaccactcaactacattttttaaatat 9104657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 132 - 217
Target Start/End: Complemental strand, 18565836 - 18565751
Alignment:
Q  132 agtggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatat 217  Q
    ||||||||||||||| ||||||||||| ||||||||| ||   || |||||||||||||||  ||||||||||||||| |||||||    
T  18565836 agtggtataaatgggtctcatataatacattatattactttcgacttctcaattatttaaatgactcaactacattttttaaatat 18565751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 133 - 221
Target Start/End: Complemental strand, 40095886 - 40095798
Alignment:
Q  133 gtggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatattcat 221  Q
    |||||||||||||  | ||| ||||||||||||||| ||   || |||||||||||||||| ||||||||||||||| |||||||||||    
T  40095886 gtggtataaatggaccccatctaatatattatattactttacacttctcaattatttaaactactcaactacattttttaaatattcat 40095798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 153 - 227
Target Start/End: Complemental strand, 14657587 - 14657513
Alignment:
Q  153 ataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatattcatctcact 227  Q
    |||||| |||||||||||||  || |  ||||||||||||||||||||||||||||| ||||||||||| |||||    
T  14657587 ataatacattatattatttcacactttccaattatttaaaccactcaactacattttctaaatattcatatcact 14657513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 136 - 209
Target Start/End: Complemental strand, 32914551 - 32914478
Alignment:
Q  136 gtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacatttt 209  Q
    ||||||||||| | |||||||||| |||||||| |||  || | ||||||||||||||||||||||||||||||    
T  32914551 gtataaatgggtcccatataatattttatattacttcacacttttcaattatttaaaccactcaactacatttt 32914478  T

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Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 133 - 221
Target Start/End: Complemental strand, 4897336 - 4897248
Alignment:
Q  133 gtggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatattcat 221  Q
    |||||||||||||  | |||||||||||||| |||| |||  |  | |||||||||||||| ||||||||||||||| |||||||||||    
T  4897336 gtggtataaatggatcacatataatatattacattacttcacatttttcaattatttaaactactcaactacattttctaaatattcat 4897248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 133 - 221
Target Start/End: Complemental strand, 4944730 - 4944642
Alignment:
Q  133 gtggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatattcat 221  Q
    |||||||||||||  | |||||||||||||| |||| |||  |  | |||||||||||||| ||||||||||||||| |||||||||||    
T  4944730 gtggtataaatggatcacatataatatattacattacttcacatttttcaattatttaaactactcaactacattttctaaatattcat 4944642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 137 - 217
Target Start/End: Complemental strand, 39375799 - 39375719
Alignment:
Q  137 tataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatat 217  Q
    |||||||| | ||||||||||||||||||||| ||| ||  |  ||||||||||||||||||||||| ||||| |||||||    
T  39375799 tataaatgagtctcatataatatattatattacttcatattttccaattatttaaaccactcaactatattttttaaatat 39375719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 182 - 228
Target Start/End: Original strand, 3384731 - 3384777
Alignment:
Q  182 aattatttaaaccactcaactacattttataaatattcatctcactc 228  Q
    |||||||||||| | ||||||||||||||||||||||||| ||||||    
T  3384731 aattatttaaacaattcaactacattttataaatattcatatcactc 3384777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 134 - 172
Target Start/End: Original strand, 37258158 - 37258196
Alignment:
Q  134 tggtataaatgggactcatataatatattatattatttc 172  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  37258158 tggtataaatgggtctcatataatatattatattatttc 37258196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 221
Target Start/End: Complemental strand, 8322243 - 8322179
Alignment:
Q  157 tatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatattcat 221  Q
    |||||||||||| |||  || | ||||||||||||||||||||| ||||||||  ||||||||||    
T  8322243 tatattatattacttcacacttttcaattatttaaaccactcaattacatttttcaaatattcat 8322179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 221
Target Start/End: Original strand, 5147128 - 5147194
Alignment:
Q  155 aatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatattcat 221  Q
    ||||||||||||||| ||  || || | |||||||||| || ||||||||||||| |||||||||||    
T  5147128 aatatattatattatctcacacttccctattatttaaatcattcaactacattttctaaatattcat 5147194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 198
Target Start/End: Complemental strand, 37069997 - 37069932
Alignment:
Q  133 gtggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactc 198  Q
    |||||||||||||| | || |||||||| ||||||||||   || || ||||||||||||||||||    
T  37069997 gtggtataaatgggtcccacataatataatatattattttacacttcccaattatttaaaccactc 37069932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 218
Target Start/End: Complemental strand, 3739958 - 3739874
Alignment:
Q  134 tggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatatt 218  Q
    |||||||||| || |||| |||||| ||||||||||||  ||  | ||||||||||||| || ||| |||||| || ||||||||    
T  3739958 tggtataaataggtctcacataatacattatattattttatatttttcaattatttaaatcattcatctacatattctaaatatt 3739874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 217
Target Start/End: Original strand, 6858994 - 6859078
Alignment:
Q  133 gtggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatat 217  Q
    |||||||||||||| | ||  ||||| | ||||||| |||  || || ||||||||||||||||| ||||| ||||| |||||||    
T  6858994 gtggtataaatgggtcccacgtaatacaatatattacttcacacttcccaattatttaaaccactaaactatattttctaaatat 6859078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 209
Target Start/End: Original strand, 29984902 - 29984962
Alignment:
Q  149 tcatataatatattatattatttcttacatctcaattatttaaaccactcaactacatttt 209  Q
    |||| |||| |||||||||||||  ||| ||| |||||||||||| ||||||||| |||||    
T  29984902 tcatttaatttattatattattttatacttcttaattatttaaacaactcaactaaatttt 29984962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 221
Target Start/End: Original strand, 33386719 - 33386759
Alignment:
Q  181 caattatttaaaccactcaactacattttataaatattcat 221  Q
    |||||||||||||||||||| | |||||| |||||||||||    
T  33386719 caattatttaaaccactcaattgcattttctaaatattcat 33386759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 134 - 217
Target Start/End: Complemental strand, 56682 - 56599
Alignment:
Q  134 tggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatat 217  Q
    ||||||||||||||| || |||||||||||||||| ||   || |||||||||||||||||||||||||||||||| |||||||    
T  56682 tggtataaatgggacccacataatatattatattactttacacttctcaattatttaaaccactcaactacattttctaaatat 56599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 155 - 221
Target Start/End: Complemental strand, 38568040 - 38567974
Alignment:
Q  155 aatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatattcat 221  Q
    |||||||||||||| ||||||| | |||||||||||||||||||||||||||||| |||||||||||    
T  38568040 aatatattatattacttcttacttttcaattatttaaaccactcaactacattttttaaatattcat 38567974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 136 - 221
Target Start/End: Complemental strand, 41377474 - 41377389
Alignment:
Q  136 gtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatattcat 221  Q
    ||||||||||| || | |||||||||||||||| |||  || |||||||||||| ||| ||||||||||||||| |||||||||||    
T  41377474 gtataaatgggtcttacataatatattatattacttcccacttctcaattattttaactactcaactacattttttaaatattcat 41377389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 136 - 221
Target Start/End: Complemental strand, 55875934 - 55875849
Alignment:
Q  136 gtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatattcat 221  Q
    ||||||||||| | || |||||| ||||||||| |||  |  ||||||||| |||||||||||||||||||||| |||||||||||    
T  55875934 gtataaatgggtcccacataataaattatattacttcacatctctcaattacttaaaccactcaactacattttttaaatattcat 55875849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 133 - 217
Target Start/End: Original strand, 23560017 - 23560101
Alignment:
Q  133 gtggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatat 217  Q
    |||||||||||||||| || ||||||||||| |||| ||   || |  ||||||||||||||||||||||||||||| |||||||    
T  23560017 gtggtataaatgggacccacataatatattacattactttacactttccaattatttaaaccactcaactacattttctaaatat 23560101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 134 - 221
Target Start/End: Original strand, 5415180 - 5415267
Alignment:
Q  134 tggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatattcat 221  Q
    ||||||||||||||  || |||||||||||||||| ||   || || |||||||||||  |||||||||||||||| |||||||||||    
T  5415180 tggtataaatgggatccacataatatattatattactttacacttcccaattatttaactcactcaactacattttctaaatattcat 5415267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 133 - 217
Target Start/End: Original strand, 779897 - 779981
Alignment:
Q  133 gtggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatat 217  Q
    |||||||||||||| |||| |||||| ||||||||| |||  |  | || ||||||||||||||||||||| ||||| |||||||    
T  779897 gtggtataaatgggtctcacataatacattatattacttcacatttttccattatttaaaccactcaactatattttctaaatat 779981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 228
Target Start/End: Complemental strand, 7907454 - 7907407
Alignment:
Q  181 caattatttaaaccactcaactacattttataaatattcatctcactc 228  Q
    ||||||||||||||||||||||||||||| ||||||| ||| ||||||    
T  7907454 caattatttaaaccactcaactacattttctaaatatccatatcactc 7907407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 227
Target Start/End: Original strand, 43355013 - 43355060
Alignment:
Q  180 tcaattatttaaaccactcaactacattttataaatattcatctcact 227  Q
    ||||||||||||||||||||| |||||||| ||||||||||| |||||    
T  43355013 tcaattatttaaaccactcaattacattttttaaatattcatatcact 43355060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 221
Target Start/End: Complemental strand, 46382091 - 46382024
Alignment:
Q  154 taatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatattcat 221  Q
    ||||||||||||||| |||  || ||||||||||||||||||||| |||| |||||  ||||||||||    
T  46382091 taatatattatattagttcacacttctcaattatttaaaccactccactatatttttcaaatattcat 46382024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 136 - 209
Target Start/End: Complemental strand, 52327101 - 52327028
Alignment:
Q  136 gtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacatttt 209  Q
    ||||||||||| | || ||||||| |||||||| |||  || | ||||||||||||| ||||||||||||||||    
T  52327101 gtataaatgggtcccacataatattttatattacttcacacttttcaattatttaaatcactcaactacatttt 52327028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 228
Target Start/End: Original strand, 34388850 - 34388898
Alignment:
Q  180 tcaattatttaaaccactcaactacattttataaatattcatctcactc 228  Q
    |||||||||||||||||| ||| ||||||| ||||||||||| ||||||    
T  34388850 tcaattatttaaaccactaaaccacattttctaaatattcatatcactc 34388898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 217
Target Start/End: Original strand, 55876020 - 55876083
Alignment:
Q  154 taatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatat 217  Q
    ||||||||||||||| |||  || |||||||||||||||| | ||||||||| ||| |||||||    
T  55876020 taatatattatattacttcacacttctcaattatttaaactattcaactacactttctaaatat 55876083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 214
Target Start/End: Original strand, 9268381 - 9268415
Alignment:
Q  180 tcaattatttaaaccactcaactacattttataaa 214  Q
    |||||||||||||||||||||||||||||| ||||    
T  9268381 tcaattatttaaaccactcaactacattttctaaa 9268415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 193
Target Start/End: Original strand, 43264456 - 43264517
Alignment:
Q  132 agtggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaac 193  Q
    ||||||||||||||  ||||  ||||||||||||||| |||  || ||||||||||||||||    
T  43264456 agtggtataaatggacctcacctaatatattatattacttcacacttctcaattatttaaac 43264517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 221
Target Start/End: Original strand, 48262993 - 48263084
Alignment:
Q  134 tggtataaatgggactcatataatatattatattatttctt---acatctcaattatttaaacca-ctcaactacattttataaatattcat 221  Q
    ||||||||||| |||||| ||||||||||||| |||| |||   || | ||||||||||||| ||  | ||||||||||| |||||||||||    
T  48262993 tggtataaatgagactcacataatatattatactattactttacacttttcaattatttaaatcattttaactacattttctaaatattcat 48263084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 9e-20; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 132 - 217
Target Start/End: Complemental strand, 40279061 - 40278976
Alignment:
Q  132 agtggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatat 217  Q
    ||||||||||||||||| || |||||||||||||||| ||  ||| |  ||||||||||||||||||||||||||||| |||||||    
T  40279061 agtggtataaatgggacccacataatatattatattactttatactttccaattatttaaaccactcaactacattttctaaatat 40278976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 134 - 221
Target Start/End: Original strand, 11425490 - 11425577
Alignment:
Q  134 tggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatattcat 221  Q
    ||||||||||||||  || |||||||||||||||| ||   || || ||||||||||| | ||||||||||||||| |||||||||||    
T  11425490 tggtataaatgggatccacataatatattatattactttacacttcccaattatttaaccgactcaactacattttctaaatattcat 11425577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 181 - 221
Target Start/End: Complemental strand, 27594314 - 27594274
Alignment:
Q  181 caattatttaaaccactcaactacattttataaatattcat 221  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  27594314 caattatttaaaccactcaactacattttctaaatattcat 27594274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 181 - 221
Target Start/End: Original strand, 35158923 - 35158963
Alignment:
Q  181 caattatttaaaccactcaactacattttataaatattcat 221  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  35158923 caattatttaaaccactcaactacattttctaaatattcat 35158963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 217
Target Start/End: Complemental strand, 1156369 - 1156284
Alignment:
Q  132 agtggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatat 217  Q
    ||||||||||||||| ||||  ||||| | |||||||||||  || || ||||||||||||||||| ||||| || || |||||||    
T  1156369 agtggtataaatgggtctcacgtaatacaatatattatttcacacttcccaattatttaaaccactaaactatatcttctaaatat 1156284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 182 - 218
Target Start/End: Original strand, 34954345 - 34954381
Alignment:
Q  182 aattatttaaaccactcaactacattttataaatatt 218  Q
    |||||||||||||||||||||||||||| ||||||||    
T  34954345 aattatttaaaccactcaactacattttttaaatatt 34954381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 209
Target Start/End: Complemental strand, 37479268 - 37479212
Alignment:
Q  153 ataatatattatattatttcttacatctcaattatttaaaccactcaactacatttt 209  Q
    |||||||||||||||| ||   || | ||||||||||||||||||||||||||||||    
T  37479268 ataatatattatattactttaaacttttcaattatttaaaccactcaactacatttt 37479212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 134 - 217
Target Start/End: Complemental strand, 17312945 - 17312863
Alignment:
Q  134 tggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatat 217  Q
    ||||||||||||| ||||  |||||  |||||||| |||  || | ||||||||||||||||||||||||||| || |||||||    
T  17312945 tggtataaatgggtctcag-taatactttatattacttcacacttttcaattatttaaaccactcaactacatcttctaaatat 17312863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 214
Target Start/End: Complemental strand, 9682408 - 9682374
Alignment:
Q  180 tcaattatttaaaccactcaactacattttataaa 214  Q
    |||||||||||||||||||||||||||||| ||||    
T  9682408 tcaattatttaaaccactcaactacattttctaaa 9682374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 217
Target Start/End: Complemental strand, 18227095 - 18227011
Alignment:
Q  133 gtggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatat 217  Q
    |||||||||| ||| | || |||||| |||||||||  ||  || || |||||||||||||||  |||||||||||| |||||||    
T  18227095 gtggtataaacgggtcccacataatacattatattacctcacacttcccaattatttaaaccatccaactacattttttaaatat 18227011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 9e-20; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 136 - 217
Target Start/End: Original strand, 7900161 - 7900242
Alignment:
Q  136 gtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatat 217  Q
    ||||||||||||| || |||||||||||||||| ||  ||| || ||||||||||||||||||||||||||||| |||||||    
T  7900161 gtataaatgggacccacataatatattatattactttatacttcccaattatttaaaccactcaactacattttctaaatat 7900242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 133 - 217
Target Start/End: Original strand, 1035747 - 1035831
Alignment:
Q  133 gtggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatat 217  Q
    |||||||| ||||| | ||| ||||| | |||||||||||  || |||||||||||||||||||| ||||| ||||| |||||||    
T  1035747 gtggtatatatgggtcccatgtaatacaatatattatttcacacttctcaattatttaaaccactaaactatattttctaaatat 1035831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 157 - 217
Target Start/End: Complemental strand, 19322891 - 19322831
Alignment:
Q  157 tatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatat 217  Q
    |||||||||||| | | ||| |||||||||||||||||| ||||||||||||| |||||||    
T  19322891 tatattatattactacatacttctcaattatttaaaccattcaactacattttttaaatat 19322831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 133 - 217
Target Start/End: Original strand, 37457626 - 37457710
Alignment:
Q  133 gtggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatat 217  Q
    |||||||||||||| | ||  ||||| | |||||||||||  || ||||||||||| |||||||||||||| ||||| |||||||    
T  37457626 gtggtataaatgggtcccacgtaatacaatatattatttcacacttctcaattattaaaaccactcaactatattttctaaatat 37457710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 180 - 221
Target Start/End: Complemental strand, 26707172 - 26707131
Alignment:
Q  180 tcaattatttaaaccactcaactacattttataaatattcat 221  Q
    |||||||||||||||| ||||||||||||| |||||||||||    
T  26707172 tcaattatttaaaccattcaactacattttctaaatattcat 26707131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 221
Target Start/End: Original strand, 51613256 - 51613345
Alignment:
Q  132 agtggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatattcat 221  Q
    ||||||||||||||  | || ||||||  |||||||| |||  || |  ||||||||||||||||||||||||||||| |||||| ||||    
T  51613256 agtggtataaatggatcccacataataatttatattacttcacactttccaattatttaaaccactcaactacattttctaaatactcat 51613345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 221
Target Start/End: Complemental strand, 10574462 - 10574370
Alignment:
Q  129 ataagtggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatattcat 221  Q
    |||||||||||||||| |   || |||||||| ||||||| |||  |  ||||||||||||||| ||||||| || ||||| |||||||||||    
T  10574462 ataagtggtataaatgagttccacataatataatatattacttcacatttctcaattatttaaatcactcaattatattttttaaatattcat 10574370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 217
Target Start/End: Complemental strand, 19993471 - 19993387
Alignment:
Q  133 gtggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatat 217  Q
    |||||||| ||||||  || |||||||||||||||| ||   || | | |||||||||||||||||||||| ||||| |||||||    
T  19993471 gtggtatagatgggatccacataatatattatattactttacactttttaattatttaaaccactcaactatattttctaaatat 19993387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 217
Target Start/End: Complemental strand, 50428573 - 50428489
Alignment:
Q  133 gtggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatat 217  Q
    |||||||||||||  ||||   |||| ||||||||| |||  || ||||||||||||||| |||||||||| ||||| |||||||    
T  50428573 gtggtataaatggatctcacgcaataaattatattacttcacacttctcaattatttaaatcactcaactatattttctaaatat 50428489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 134 - 217
Target Start/End: Original strand, 43496401 - 43496484
Alignment:
Q  134 tggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatat 217  Q
    ||||||||| ||| | || |||||| |||||||||  ||  || |||||||||||||||| | ||||||||||||| |||||||    
T  43496401 tggtataaacgggtcccacataatacattatattacctcacacttctcaattatttaaactattcaactacattttttaaatat 43496484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 214
Target Start/End: Complemental strand, 46823680 - 46823646
Alignment:
Q  180 tcaattatttaaaccactcaactacattttataaa 214  Q
    |||||||||||||||||||||||||||||| ||||    
T  46823680 tcaattatttaaaccactcaactacattttctaaa 46823646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 221
Target Start/End: Original strand, 47394377 - 47394462
Alignment:
Q  136 gtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatattcat 221  Q
    |||||||||||   || |||||| ||||||||| |||  || || ||||||||||||| ||||  ||||||||| |||||||||||    
T  47394377 gtataaatgggttccacataatacattatattacttcacacttcccaattatttaaactactcgtctacattttttaaatattcat 47394462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 217
Target Start/End: Complemental strand, 23571102 - 23571018
Alignment:
Q  133 gtggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatat 217  Q
    |||||||||||||| | || |||||| ||||||||| |||  |  | || ||||||||||| ||||||||| ||||| |||||||    
T  23571102 gtggtataaatgggtcccacataatacattatattacttcacatttttccattatttaaacaactcaactatattttttaaatat 23571018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 9e-17; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 133 - 221
Target Start/End: Complemental strand, 2844231 - 2844143
Alignment:
Q  133 gtggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatattcat 221  Q
    |||||||||||| |  ||| |||||| ||||||||| |||  || || ||||||||||||||||||||||||||||| |||||||||||    
T  2844231 gtggtataaatgagtttcacataatacattatattacttcacacttcccaattatttaaaccactcaactacattttttaaatattcat 2844143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 154 - 228
Target Start/End: Complemental strand, 10682582 - 10682508
Alignment:
Q  154 taatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatattcatctcactc 228  Q
    ||||||||||||||| |||  || ||||||||||||||||||||||||||||||||  |||||| ||| ||||||    
T  10682582 taatatattatattacttcacacttctcaattatttaaaccactcaactacatttttcaaatatccatgtcactc 10682508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 133 - 214
Target Start/End: Original strand, 13685397 - 13685478
Alignment:
Q  133 gtggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaa 214  Q
    |||||||||||||| | || |||||| ||||||||||||  ||| | ||||||||||||| |||||||||| ||||| ||||    
T  13685397 gtggtataaatgggtcccacataatacattatattattttatacttttcaattatttaaaacactcaactatattttctaaa 13685478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 203
Target Start/End: Original strand, 30775353 - 30775423
Alignment:
Q  133 gtggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaacta 203  Q
    |||||||||||||| |  | |||||| ||||||||| |||  || | ||||||||||||||||||||||||    
T  30775353 gtggtataaatgggtcctacataatacattatattacttcacacttttcaattatttaaaccactcaacta 30775423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 221
Target Start/End: Original strand, 19763591 - 19763631
Alignment:
Q  181 caattatttaaaccactcaactacattttataaatattcat 221  Q
    ||||||||||||||||| || |||||||| |||||||||||    
T  19763591 caattatttaaaccacttaattacattttctaaatattcat 19763631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 228
Target Start/End: Original strand, 19789280 - 19789328
Alignment:
Q  180 tcaattatttaaaccactcaactacattttataaatattcatctcactc 228  Q
    ||||||||||||| |||| || |||||||| ||||||||||| ||||||    
T  19789280 tcaattatttaaatcacttaattacattttctaaatattcatatcactc 19789328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 137 - 228
Target Start/End: Original strand, 29681415 - 29681506
Alignment:
Q  137 tataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatattcatctcactc 228  Q
    |||||||| |||||| |||||||||||||||||||  || ||   |||||||| ||||||| ||||||||||||||||||| ||| ||||||    
T  29681415 tataaatgagactcacataatatattatattattttatatattcaaattatttgaaccacttaactacattttataaatatccatatcactc 29681506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 134 - 221
Target Start/End: Complemental strand, 44396482 - 44396395
Alignment:
Q  134 tggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatattcat 221  Q
    ||||||||||||||  || |||||||||||||||| ||   || || ||||||||||| ||||||||||||||||| |||||||||||    
T  44396482 tggtataaatgggatccacataatatattatattactttacacttcccaattatttaacccactcaactacattttctaaatattcat 44396395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 134 - 218
Target Start/End: Complemental strand, 43692645 - 43692561
Alignment:
Q  134 tggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatatt 218  Q
    |||||||||| || | || |||||| |||||||||||||  || |||||||||||||||||||||| ||| ||||| ||||||||    
T  43692645 tggtataaataggtcccacataatacattatattatttcacacttctcaattatttaaaccactcatctaaattttttaaatatt 43692561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 134 - 218
Target Start/End: Complemental strand, 49081331 - 49081247
Alignment:
Q  134 tggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatatt 218  Q
    ||||||||||||| ||||||||||| ||||||||||||  ||  | ||||||||||||| || ||| ||||||||| ||||||||    
T  49081331 tggtataaatgggtctcatataatacattatattattttatatttttcaattatttaaatcattcatctacattttctaaatatt 49081247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 154 - 221
Target Start/End: Complemental strand, 43598900 - 43598833
Alignment:
Q  154 taatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatattcat 221  Q
    ||||||||||||||| |||  || |||||||||||||||||||||||||| |||||  ||||||||||    
T  43598900 taatatattatattagttcacacttctcaattatttaaaccactcaactatatttttcaaatattcat 43598833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 136 - 209
Target Start/End: Complemental strand, 48252980 - 48252907
Alignment:
Q  136 gtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacatttt 209  Q
    ||||||||||| | |||||||||| |||||||| |||  || |  |||||||||||||||||||||||||||||    
T  48252980 gtataaatgggtcccatataatattttatattacttcacactttccaattatttaaaccactcaactacatttt 48252907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 161 - 221
Target Start/End: Complemental strand, 36725858 - 36725798
Alignment:
Q  161 ttatattatttcttacatctcaattatttaaaccactcaactacattttataaatattcat 221  Q
    |||||||||||   || |||||||||||||||||||||||||||| ||| |||||||||||    
T  36725858 ttatattattttacacttctcaattatttaaaccactcaactacaatttctaaatattcat 36725798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 155 - 221
Target Start/End: Original strand, 36118058 - 36118124
Alignment:
Q  155 aatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatattcat 221  Q
    |||| ||||||||||||   || |||| |||||||||||||||||| |||||||| |||||||||||    
T  36118058 aatacattatattatttaacacttctctattatttaaaccactcaattacattttctaaatattcat 36118124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 218
Target Start/End: Original strand, 38346409 - 38346494
Alignment:
Q  134 tggtataaatgggactcatataatatatta-tattatttcttacatctcaattatttaaaccactcaactacattttataaatatt 218  Q
    ||||||||||||  | |||||||||||| | ||||| ||| ||  | | |||||||||||||||||||||||||||| ||||||||    
T  38346409 tggtataaatggaccccatataatatataaatattacttcatattttttaattatttaaaccactcaactacattttttaaatatt 38346494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 136 - 217
Target Start/End: Original strand, 49080771 - 49080851
Alignment:
Q  136 gtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatat 217  Q
    ||||||||||| || | |||||||||||||||| |||  || | ||||||||||||||||||  |||||||||| |||||||    
T  49080771 gtataaatgggtcttacataatatattatattacttcacacttttcaattatttaaaccact-tactacattttttaaatat 49080851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 221
Target Start/End: Original strand, 12879278 - 12879345
Alignment:
Q  154 taatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatattcat 221  Q
    |||||| |||||||| |||  || |||||||||||||||| || |||||| ||||| |||||||||||    
T  12879278 taatattttatattacttcacacttctcaattatttaaacaacacaactatattttctaaatattcat 12879345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 8404797 - 8404833
Alignment:
Q  181 caattatttaaaccactcaactacattttataaatat 217  Q
    |||||||||||||||||||| |||||||| |||||||    
T  8404797 caattatttaaaccactcaattacattttttaaatat 8404833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 217
Target Start/End: Complemental strand, 37626955 - 37626915
Alignment:
Q  177 atctcaattatttaaaccactcaactacattttataaatat 217  Q
    ||||||||||||||||| ||||||||| ||||| |||||||    
T  37626955 atctcaattatttaaacaactcaactatattttttaaatat 37626915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 155 - 221
Target Start/End: Original strand, 14593889 - 14593955
Alignment:
Q  155 aatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatattcat 221  Q
    |||||||||||||| |||  | ||||||||||||||||||| |||| ||||||||||||||||||||    
T  14593889 aatatattatattacttcacaaatctcaattatttaaaccattcaattacattttataaatattcat 14593955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 133 - 228
Target Start/End: Original strand, 39060199 - 39060294
Alignment:
Q  133 gtggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatattcatctcactc 228  Q
    |||||||||||||| | || |||||| ||||||||| |||  || | || ||||||||||||||||||||| ||||| ||||||| ||| ||||||    
T  39060199 gtggtataaatgggtcccacataatacattatattacttcacacttttcgattatttaaaccactcaactatattttctaaatatccatatcactc 39060294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 180 - 228
Target Start/End: Original strand, 4925116 - 4925164
Alignment:
Q  180 tcaattatttaaaccactcaactacattttataaatattcatctcactc 228  Q
    |||||||||||||||||||||||||||||| ||||||| ||| ||||||    
T  4925116 tcaattatttaaaccactcaactacattttttaaatatccatatcactc 4925164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 217
Target Start/End: Complemental strand, 34769664 - 34769580
Alignment:
Q  133 gtggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatat 217  Q
    |||||||||| ||| | || |||||| |||||||||  ||  || || ||||||||||||||| ||||||||||||| |||||||    
T  34769664 gtggtataaacgggtcccacataatacattatattacctcacacttcccaattatttaaaccattcaactacattttttaaatat 34769580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 217
Target Start/End: Complemental strand, 34383771 - 34383710
Alignment:
Q  156 atatattatattatttcttacatctcaattatttaaaccactcaactacattttataaatat 217  Q
    ||||||||||||| ||   || |||||||||||||||||||  ||||||||||| |||||||    
T  34383771 atatattatattactttacacttctcaattatttaaaccacaaaactacattttctaaatat 34383710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 221
Target Start/End: Complemental strand, 35470373 - 35470332
Alignment:
Q  180 tcaattatttaaaccactcaactacattttataaatattcat 221  Q
    |||||||||||||| ||||||||| ||||| |||||||||||    
T  35470373 tcaattatttaaactactcaactatattttctaaatattcat 35470332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 9959364 - 9959328
Alignment:
Q  181 caattatttaaaccactcaactacattttataaatat 217  Q
    ||||||||||||| ||||||||||||||| |||||||    
T  9959364 caattatttaaactactcaactacattttctaaatat 9959328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 198
Target Start/End: Original strand, 13803 - 13868
Alignment:
Q  133 gtggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactc 198  Q
    |||||||||||||| | || |||||||| ||||||||||   || || ||||||||||||||||||    
T  13803 gtggtataaatgggtcccacataatataatatattattttacacttcccaattatttaaaccactc 13868  T

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Target: scaffold0110; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 198
Target Start/End: Original strand, 21540 - 21605
Alignment:
Q  133 gtggtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactc 198  Q
    |||||||||||||| | || |||||||| ||||||||||   || || ||||||||||||||||||    
T  21540 gtggtataaatgggtcccacataatataatatattattttacacttcccaattatttaaaccactc 21605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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