View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21321_high_36 (Length: 214)

Name: NF21321_high_36
Description: NF21321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21321_high_36
NF21321_high_36
[»] chr6 (25 HSPs)
chr6 (16-138)||(2403672-2403793)
chr6 (16-140)||(17183316-17183438)
chr6 (16-145)||(19635791-19635922)
chr6 (144-200)||(4509778-4509834)
chr6 (20-140)||(18867192-18867310)
chr6 (135-200)||(23069040-23069105)
chr6 (144-200)||(11763174-11763230)
chr6 (144-200)||(18772209-18772265)
chr6 (144-200)||(33574702-33574758)
chr6 (144-200)||(33574880-33574936)
chr6 (88-138)||(19634500-19634550)
chr6 (43-136)||(28188112-28188205)
chr6 (80-138)||(28189252-28189310)
chr6 (20-70)||(28562841-28562891)
chr6 (151-200)||(23416853-23416902)
chr6 (16-69)||(28744817-28744869)
chr6 (80-136)||(2405049-2405104)
chr6 (89-140)||(17141210-17141260)
chr6 (15-70)||(29056834-29056889)
chr6 (27-70)||(34491221-34491264)
chr6 (129-183)||(2565385-2565439)
chr6 (16-54)||(17141135-17141173)
chr6 (80-137)||(20400140-20400197)
chr6 (80-137)||(24672558-24672615)
chr6 (20-60)||(3587639-3587679)
[»] chr5 (31 HSPs)
chr5 (16-136)||(15839239-15839361)
chr5 (20-137)||(7122448-7122565)
chr5 (20-136)||(40728214-40728331)
chr5 (27-136)||(3859759-3859868)
chr5 (20-70)||(21796553-21796603)
chr5 (16-133)||(25642666-25642782)
chr5 (20-70)||(42536206-42536256)
chr5 (21-136)||(3370128-3370244)
chr5 (144-201)||(39816505-39816562)
chr5 (22-70)||(21716819-21716867)
chr5 (144-198)||(13119148-13119202)
chr5 (88-141)||(30668924-30668975)
chr5 (20-70)||(31795885-31795935)
chr5 (144-201)||(702299-702356)
chr5 (151-200)||(2852054-2852103)
chr5 (82-135)||(31175236-31175289)
chr5 (151-200)||(33678514-33678563)
chr5 (149-200)||(5204618-5204670)
chr5 (80-140)||(7121316-7121375)
chr5 (144-200)||(13127330-13127386)
chr5 (90-138)||(21789547-21789594)
chr5 (152-200)||(36427906-36427954)
chr5 (80-139)||(3371329-3371387)
chr5 (16-63)||(30668857-30668904)
chr5 (144-182)||(5360075-5360113)
chr5 (154-200)||(14434819-14434865)
chr5 (151-201)||(28318347-28318397)
chr5 (144-198)||(34259889-34259943)
chr5 (151-200)||(40756542-40756592)
chr5 (155-199)||(9604433-9604477)
chr5 (144-200)||(42486606-42486662)
[»] chr4 (45 HSPs)
chr4 (16-135)||(468216-468335)
chr4 (20-138)||(25439066-25439184)
chr4 (20-152)||(34423160-34423293)
chr4 (17-140)||(2711971-2712091)
chr4 (16-142)||(21075151-21075276)
chr4 (20-138)||(30607133-30607252)
chr4 (16-138)||(33268191-33268311)
chr4 (80-138)||(21077126-21077184)
chr4 (20-138)||(48181822-48181941)
chr4 (144-200)||(33491163-33491219)
chr4 (20-138)||(40314214-40314332)
chr4 (20-138)||(40324290-40324408)
chr4 (16-141)||(46080479-46080603)
chr4 (20-70)||(21464047-21464097)
chr4 (144-200)||(27761401-27761457)
chr4 (80-135)||(21021229-21021284)
chr4 (90-137)||(25437929-25437976)
chr4 (144-199)||(56303187-56303242)
chr4 (20-70)||(23019067-23019117)
chr4 (144-198)||(31999074-31999128)
chr4 (80-142)||(48183186-48183247)
chr4 (151-200)||(126934-126983)
chr4 (151-200)||(1857160-1857209)
chr4 (21-70)||(10671445-10671494)
chr4 (21-70)||(10885085-10885134)
chr4 (144-201)||(29364531-29364588)
chr4 (90-138)||(4493689-4493737)
chr4 (80-136)||(4499789-4499845)
chr4 (149-200)||(31975903-31975955)
chr4 (144-200)||(42177343-42177399)
chr4 (97-137)||(42251501-42251541)
chr4 (80-139)||(34422049-34422108)
chr4 (88-138)||(46079139-46079188)
chr4 (88-141)||(1968234-1968287)
chr4 (151-200)||(4720827-4720876)
chr4 (144-201)||(5970699-5970756)
chr4 (151-200)||(27990537-27990586)
chr4 (80-137)||(30606024-30606081)
chr4 (80-137)||(40315383-40315440)
chr4 (80-137)||(40325458-40325515)
chr4 (91-136)||(42250138-42250182)
chr4 (21-70)||(46577024-46577073)
chr4 (144-201)||(54996452-54996509)
chr4 (20-60)||(21020110-21020150)
chr4 (20-56)||(48508369-48508405)
[»] chr7 (35 HSPs)
chr7 (16-137)||(37747361-37747481)
chr7 (16-129)||(11847037-11847152)
chr7 (20-137)||(27251060-27251178)
chr7 (27-139)||(15993719-15993830)
chr7 (16-136)||(32040953-32041072)
chr7 (16-70)||(35359226-35359280)
chr7 (20-140)||(39050582-39050702)
chr7 (27-142)||(48989273-48989386)
chr7 (20-70)||(7469185-7469235)
chr7 (20-70)||(28241758-28241808)
chr7 (80-137)||(44377461-44377518)
chr7 (80-137)||(44386328-44386385)
chr7 (151-200)||(46575102-46575151)
chr7 (88-140)||(15992325-15992377)
chr7 (21-138)||(44378644-44378761)
chr7 (21-138)||(44387511-44387628)
chr7 (20-70)||(23152057-23152107)
chr7 (20-70)||(44523467-44523517)
chr7 (156-200)||(3214887-3214931)
chr7 (144-200)||(23406653-23406709)
chr7 (144-200)||(26605057-26605113)
chr7 (157-200)||(5582862-5582905)
chr7 (34-69)||(6907216-6907251)
chr7 (21-64)||(11652421-11652464)
chr7 (27-70)||(21521471-21521514)
chr7 (88-138)||(21520442-21520491)
chr7 (88-138)||(32042978-32043027)
chr7 (80-134)||(39049940-39049994)
chr7 (157-198)||(41968435-41968476)
chr7 (149-200)||(5215378-5215430)
chr7 (88-136)||(11651340-11651387)
chr7 (155-199)||(15716266-15716310)
chr7 (144-200)||(15954610-15954666)
chr7 (90-138)||(28240665-28240712)
chr7 (144-200)||(35291327-35291383)
[»] chr3 (35 HSPs)
chr3 (16-137)||(26167162-26167281)
chr3 (20-148)||(28038774-28038900)
chr3 (16-135)||(23495680-23495797)
chr3 (144-200)||(1129130-1129186)
chr3 (144-200)||(40478107-40478163)
chr3 (144-200)||(44379415-44379471)
chr3 (144-199)||(41982334-41982389)
chr3 (144-198)||(7862794-7862848)
chr3 (20-136)||(24171728-24171845)
chr3 (16-70)||(29860682-29860736)
chr3 (28-138)||(38601335-38601445)
chr3 (86-137)||(5117788-5117838)
chr3 (144-195)||(24170280-24170331)
chr3 (80-135)||(24170599-24170654)
chr3 (144-199)||(43745348-43745403)
chr3 (144-198)||(23456807-23456861)
chr3 (151-200)||(1021330-1021379)
chr3 (37-137)||(5118760-5118859)
chr3 (144-201)||(40474184-40474241)
chr3 (151-200)||(53289231-53289280)
chr3 (144-200)||(25834579-25834635)
chr3 (144-200)||(39678456-39678511)
chr3 (144-200)||(51344721-51344777)
chr3 (144-192)||(54788664-54788712)
chr3 (80-119)||(49116407-49116446)
chr3 (151-200)||(32121900-32121950)
chr3 (157-199)||(46507363-46507405)
chr3 (151-200)||(30349360-30349409)
chr3 (151-200)||(35501146-35501195)
chr3 (90-138)||(28039991-28040038)
chr3 (149-200)||(29698323-29698375)
chr3 (144-200)||(36220755-36220811)
chr3 (144-200)||(37520703-37520759)
chr3 (144-200)||(42479034-42479090)
chr3 (144-200)||(42621849-42621905)
[»] chr1 (49 HSPs)
chr1 (16-136)||(27904215-27904335)
chr1 (16-138)||(48643276-48643398)
chr1 (16-138)||(50961354-50961475)
chr1 (20-136)||(49763642-49763759)
chr1 (20-137)||(16830994-16831112)
chr1 (20-137)||(20160360-20160478)
chr1 (16-70)||(36631034-36631088)
chr1 (16-69)||(10375400-10375453)
chr1 (144-200)||(48976876-48976932)
chr1 (144-199)||(34038163-34038218)
chr1 (20-137)||(46624603-46624721)
chr1 (144-200)||(10408644-10408700)
chr1 (21-69)||(22058766-22058814)
chr1 (144-200)||(24230570-24230626)
chr1 (144-200)||(38261152-38261208)
chr1 (88-139)||(17865686-17865737)
chr1 (27-70)||(27361451-27361494)
chr1 (144-199)||(52180582-52180637)
chr1 (20-70)||(7377421-7377471)
chr1 (144-198)||(51056545-51056599)
chr1 (88-137)||(7378447-7378496)
chr1 (90-139)||(20159219-20159268)
chr1 (80-137)||(27902952-27903009)
chr1 (151-200)||(31821572-31821621)
chr1 (88-140)||(6668316-6668368)
chr1 (144-200)||(9587993-9588049)
chr1 (144-200)||(12105161-12105217)
chr1 (80-136)||(27362151-27362207)
chr1 (144-200)||(35873937-35873993)
chr1 (144-200)||(44264006-44264062)
chr1 (82-138)||(45459210-45459265)
chr1 (144-200)||(52345600-52345656)
chr1 (155-198)||(38718092-38718135)
chr1 (154-200)||(2249588-2249634)
chr1 (80-138)||(21796113-21796171)
chr1 (90-136)||(21813848-21813894)
chr1 (83-137)||(38132670-38132723)
chr1 (80-138)||(46625793-46625851)
chr1 (151-201)||(47544653-47544703)
chr1 (146-200)||(51610537-51610591)
chr1 (151-200)||(8396705-8396754)
chr1 (84-139)||(36632264-36632316)
chr1 (159-200)||(46362024-46362065)
chr1 (151-200)||(46641873-46641922)
chr1 (83-139)||(10374131-10374186)
chr1 (80-136)||(16829854-16829910)
chr1 (144-200)||(25702436-25702492)
chr1 (144-200)||(28624827-28624883)
chr1 (97-137)||(36630982-36631021)
[»] chr8 (26 HSPs)
chr8 (27-137)||(44057140-44057251)
chr8 (20-137)||(38983221-38983339)
chr8 (20-137)||(39014318-39014436)
chr8 (16-136)||(43323790-43323908)
chr8 (16-137)||(3777125-3777246)
chr8 (20-138)||(9555842-9555958)
chr8 (20-137)||(43827103-43827220)
chr8 (80-137)||(20164623-20164680)
chr8 (144-200)||(2261363-2261419)
chr8 (20-137)||(26170335-26170453)
chr8 (144-200)||(29454144-29454200)
chr8 (21-138)||(20165804-20165921)
chr8 (20-137)||(37483326-37483444)
chr8 (15-64)||(33284448-33284497)
chr8 (144-200)||(10706556-10706612)
chr8 (144-200)||(34165910-34165966)
chr8 (80-139)||(26169195-26169254)
chr8 (149-200)||(26439510-26439561)
chr8 (144-201)||(38329451-38329508)
chr8 (80-137)||(38982109-38982166)
chr8 (80-137)||(39013206-39013263)
chr8 (80-137)||(44058248-44058304)
chr8 (151-199)||(118166-118214)
chr8 (144-200)||(1043409-1043465)
chr8 (144-200)||(29265590-29265646)
chr8 (144-196)||(44000566-44000618)
[»] scaffold0862 (1 HSPs)
scaffold0862 (16-137)||(2087-2207)
[»] scaffold0013 (2 HSPs)
scaffold0013 (16-136)||(99613-99733)
scaffold0013 (80-137)||(100910-100967)
[»] chr2 (14 HSPs)
chr2 (16-70)||(5203720-5203774)
chr2 (20-70)||(15249481-15249531)
chr2 (20-70)||(43235952-43236002)
chr2 (151-200)||(7673296-7673345)
chr2 (29-70)||(18748750-18748791)
chr2 (151-200)||(25331456-25331505)
chr2 (151-200)||(32602304-32602353)
chr2 (144-200)||(1580248-1580304)
chr2 (144-192)||(30981235-30981283)
chr2 (144-200)||(35895312-35895368)
chr2 (16-70)||(18860221-18860275)
chr2 (155-200)||(9589474-9589519)
chr2 (80-137)||(15248388-15248445)
chr2 (135-200)||(39620860-39620925)
[»] scaffold0087 (1 HSPs)
scaffold0087 (16-135)||(42090-42211)
[»] scaffold0012 (1 HSPs)
scaffold0012 (20-134)||(54449-54562)
[»] scaffold0923 (1 HSPs)
scaffold0923 (144-200)||(34-90)
[»] scaffold0667 (1 HSPs)
scaffold0667 (144-200)||(182-238)
[»] scaffold1319 (1 HSPs)
scaffold1319 (151-200)||(44-93)
[»] scaffold0265 (1 HSPs)
scaffold0265 (90-136)||(18915-18961)
[»] scaffold0300 (1 HSPs)
scaffold0300 (80-137)||(15735-15792)


Alignment Details
Target: chr6 (Bit Score: 63; Significance: 1e-27; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 16 - 138
Target Start/End: Complemental strand, 2403793 - 2403672
Alignment:
Q  16 cataggtcagaggctaatatcaaagaatcttattttacagggttggaatttaaacnnnnnnnnnacaggggagtaaaccggaactcgtctaaattacagg 115  Q
    |||||||||| |||||| ||||||||||||||||||||||||||||||| |||||         | ||||| ||||||||||||||| ||||||||||||    
T  2403793 cataggtcagcggctaaaatcaaagaatcttattttacagggttggaatctaaactttttttt-ataggggggtaaaccggaactcgcctaaattacagg 2403695  T
Q  116 gggttaaatacatattaaccctt 138  Q
    ||| |||||||||||||||||||    
T  2403694 ggggtaaatacatattaaccctt 2403672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 16 - 140
Target Start/End: Complemental strand, 17183438 - 17183316
Alignment:
Q  16 cataggtcagaggctaatatcaaagaatcttattttacagggttggaatttaaacnnnnnnnnnacaggggagtaaaccggaactcgtctaaattacagg 115  Q
    |||||||||| |||||| ||||||||||||||||||||| ||||||||| |||||         ||||||| ||||| ||||||||| ||||||||||||    
T  17183438 cataggtcagtggctaaaatcaaagaatcttattttacaaggttggaatctaaactttttttttacagggg-gtaaatcggaactcgcctaaattacagg 17183340  T
Q  116 gggttaaatacatattaacccttaa 140  Q
    ||| |||||||||||||| ||||||    
T  17183339 ggg-taaatacatattaatccttaa 17183316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 16 - 145
Target Start/End: Original strand, 19635791 - 19635922
Alignment:
Q  16 cataggtcagaggctaatatcaaagaatcttattttacagggttggaatttaaac---nnnnnnnnnacaggggagtaaaccggaactcgtctaaattac 112  Q
    ||||| |||| |||||| |||||||||||||||||||||||||||||||||||||            ||||||  |||||||| |||||| |||||||||    
T  19635791 catagatcaggggctaaaatcaaagaatcttattttacagggttggaatttaaactttttttcttttacagggaggtaaaccgaaactcgcctaaattac 19635890  T
Q  113 agggggttaaatacatattaacccttaatacaa 145  Q
    || ||| |||||||||||||||||| |||||||    
T  19635891 agaggg-taaatacatattaaccctaaatacaa 19635922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 144 - 200
Target Start/End: Original strand, 4509778 - 4509834
Alignment:
Q  144 aattataaagcaggagtaccgatacacctcactttgtgaatctaccgtagaagttcc 200  Q
    |||||| |||||||||||||| ||||||||||||||||| | |||||||||||||||    
T  4509778 aattatgaagcaggagtaccggtacacctcactttgtgagtgtaccgtagaagttcc 4509834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 140
Target Start/End: Original strand, 18867192 - 18867310
Alignment:
Q  20 ggtcagaggctaatatcaaagaatcttattttacagggttggaatttaaacnnnnnnnnnacaggggagtaaaccggaactcgtctaaattacagggggt 119  Q
    |||||| |||||| |||||| |||||||||||||||||||||||| ||||          | || || |||||||| ||||||||||||||||||||||     
T  18867192 ggtcaggggctaaaatcaaataatcttattttacagggttggaatctaaatattttttttatagcgg-gtaaaccgaaactcgtctaaattacaggggg- 18867289  T
Q  120 taaatacatattaacccttaa 140  Q
    |||| | ||||||||||||||    
T  18867290 taaagatatattaacccttaa 18867310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 135 - 200
Target Start/End: Original strand, 23069040 - 23069105
Alignment:
Q  135 ccttaatacaattataaagcaggagtaccgatacacctcactttgtgaatctaccgtagaagttcc 200  Q
    |||| ||| |||||| |||||||||||||| ||||||||||||||||| | ||||||| |||||||    
T  23069040 cctttataaaattatgaagcaggagtaccggtacacctcactttgtgagtgtaccgtaaaagttcc 23069105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 144 - 200
Target Start/End: Complemental strand, 11763230 - 11763174
Alignment:
Q  144 aattataaagcaggagtaccgatacacctcactttgtgaatctaccgtagaagttcc 200  Q
    |||||| |||||||||||||| ||||||||||| ||||| | |||||||||||||||    
T  11763230 aattatgaagcaggagtaccggtacacctcactctgtgagtgtaccgtagaagttcc 11763174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 144 - 200
Target Start/End: Original strand, 18772209 - 18772265
Alignment:
Q  144 aattataaagcaggagtaccgatacacctcactttgtgaatctaccgtagaagttcc 200  Q
    |||||| ||| |||||||||||||||| ||||||||||| | |||||||||||||||    
T  18772209 aattatgaagtaggagtaccgatacacttcactttgtgagtgtaccgtagaagttcc 18772265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 144 - 200
Target Start/End: Original strand, 33574702 - 33574758
Alignment:
Q  144 aattataaagcaggagtaccgatacacctcactttgtgaatctaccgtagaagttcc 200  Q
    |||||| ||||| |||||||| ||||||||||||||||| | |||||||||||||||    
T  33574702 aattatgaagcaagagtaccggtacacctcactttgtgagtgtaccgtagaagttcc 33574758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 144 - 200
Target Start/End: Original strand, 33574880 - 33574936
Alignment:
Q  144 aattataaagcaggagtaccgatacacctcactttgtgaatctaccgtagaagttcc 200  Q
    |||||| ||||| |||||||| ||||||||||||||||| | |||||||||||||||    
T  33574880 aattatgaagcaagagtaccggtacacctcactttgtgagtgtaccgtagaagttcc 33574936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 88 - 138
Target Start/End: Complemental strand, 19634550 - 19634500
Alignment:
Q  88 gtaaaccggaactcgtctaaattacagggggttaaatacatattaaccctt 138  Q
    |||||||| |||||| ||||||||||||||| |||| ||||||||||||||    
T  19634550 gtaaaccgaaactcgcctaaattacaggggggtaaaaacatattaaccctt 19634500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 43 - 136
Target Start/End: Complemental strand, 28188205 - 28188112
Alignment:
Q  43 tcttattttacagggttggaatttaaacnnnnnnnnnacaggggagtaaaccggaactcgtctaaattacagggggttaaatacatattaaccc 136  Q
    |||||||||||||||||||||| |||||         ||||||| | ||||| ||||||| | ||||||||||||| |||| ||||||||||||    
T  28188205 tcttattttacagggttggaatctaaactttttttttacaggggggaaaaccagaactcgcccaaattacaggggggtaaaaacatattaaccc 28188112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 80 - 138
Target Start/End: Original strand, 28189252 - 28189310
Alignment:
Q  80 acaggggagtaaaccggaactcgtctaaattacagggggttaaatacatattaaccctt 138  Q
    ||||||| |||||| |||||||| | ||||||||||||| |||| ||||||||||||||    
T  28189252 acaggggggtaaactggaactcgcccaaattacaggggggtaaaaacatattaaccctt 28189310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 28562891 - 28562841
Alignment:
Q  20 ggtcagaggctaatatcaaagaatcttattttacagggttggaatttaaac 70  Q
    ||||||||||||| | |||||||||||||||||||||||||| || |||||    
T  28562891 ggtcagaggctaaaaccaaagaatcttattttacagggttggtatctaaac 28562841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 200
Target Start/End: Original strand, 23416853 - 23416902
Alignment:
Q  151 aagcaggagtaccgatacacctcactttgtgaatctaccgtagaagttcc 200  Q
    |||||||||||||| ||||||||| ||||||| | |||||||||||||||    
T  23416853 aagcaggagtaccggtacacctcattttgtgagtgtaccgtagaagttcc 23416902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 28744817 - 28744869
Alignment:
Q  16 cataggtcagaggctaatatcaaagaatcttattttacagggttggaatttaaa 69  Q
    |||||||||| |||||| |||||| |||||||||||||||||||||||| ||||    
T  28744817 cataggtcag-ggctaaaatcaaataatcttattttacagggttggaatctaaa 28744869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 136
Target Start/End: Original strand, 2405049 - 2405104
Alignment:
Q  80 acaggggagtaaaccggaactcgtctaaattacagggggttaaatacatattaaccc 136  Q
    ||||||| ||||||||||||||| ||||||||||| ||| |||| ||||||||||||    
T  2405049 acaggggggtaaaccggaactcgcctaaattacagaggg-taaagacatattaaccc 2405104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 140
Target Start/End: Original strand, 17141210 - 17141260
Alignment:
Q  89 taaaccggaactcgtctaaattacagggggttaaatacatattaacccttaa 140  Q
    |||||||||||||| ||||||||||||||| || | ||||||||||||||||    
T  17141210 taaaccggaactcgactaaattacaggggg-tatagacatattaacccttaa 17141260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 70
Target Start/End: Complemental strand, 29056889 - 29056834
Alignment:
Q  15 gcataggtcagaggctaatatcaaagaatcttattttacagggttggaatttaaac 70  Q
    |||| |||||| | |||| ||||||||||||||||||||| ||||||||| |||||    
T  29056889 gcatgggtcagggactaaaatcaaagaatcttattttacatggttggaatctaaac 29056834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 70
Target Start/End: Complemental strand, 34491264 - 34491221
Alignment:
Q  27 ggctaatatcaaagaatcttattttacagggttggaatttaaac 70  Q
    |||||| | ||||||||||||||||||||||||||||| |||||    
T  34491264 ggctaaaaccaaagaatcttattttacagggttggaatctaaac 34491221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 183
Target Start/End: Original strand, 2565385 - 2565439
Alignment:
Q  129 attaacccttaatacaattataaagcaggagtaccgatacacctcactttgtgaa 183  Q
    ||||| |||| ||| |||||| |||||||||||||| ||||||||||||| ||||    
T  2565385 attaagcctttataaaattatgaagcaggagtaccggtacacctcactttatgaa 2565439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 54
Target Start/End: Original strand, 17141135 - 17141173
Alignment:
Q  16 cataggtcagaggctaatatcaaagaatcttattttaca 54  Q
    |||||||||| |||||| |||||||||||||||||||||    
T  17141135 cataggtcaggggctaaaatcaaagaatcttattttaca 17141173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 80 - 137
Target Start/End: Complemental strand, 20400197 - 20400140
Alignment:
Q  80 acaggggagtaaaccggaactcgtctaaattacagggggttaaatacatattaaccct 137  Q
    ||||||| |||||||| |||||| | |||||||| |||| |||| |||||||||||||    
T  20400197 acaggggggtaaaccgaaactcgcccaaattacaagggggtaaagacatattaaccct 20400140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 80 - 137
Target Start/End: Complemental strand, 24672615 - 24672558
Alignment:
Q  80 acaggggagtaaaccggaactcgtctaaattacagggggttaaatacatattaaccct 137  Q
    ||||||| | ||||| ||||||| | ||||||||||||| |||| |||||||||||||    
T  24672615 acaggggggaaaaccagaactcgcccaaattacaggggggtaaaaacatattaaccct 24672558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 3587639 - 3587679
Alignment:
Q  20 ggtcagaggctaatatcaaagaatcttattttacagggttg 60  Q
    |||||| |||||| || ||||||||||||||||||||||||    
T  3587639 ggtcaggggctaaaattaaagaatcttattttacagggttg 3587679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 6e-24; HSPs: 31)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 16 - 136
Target Start/End: Original strand, 15839239 - 15839361
Alignment:
Q  16 cataggtcagaggctaatatcaaagaatcttattttacagggttggaatttaaac--nnnnnnnnnacaggggagtaaaccggaactcgtctaaattaca 113  Q
    |||||||||| |||||| ||||||||||||||||||||||||||||||| |||||           ||||||| ||||||||||||||| |||||||| |    
T  15839239 cataggtcaggggctaaaatcaaagaatcttattttacagggttggaatctaaactttttttttttacaggggggtaaaccggaactcgcctaaattaaa 15839338  T
Q  114 gggggttaaatacatattaaccc 136  Q
    ||||| |||||||||||||||||    
T  15839339 ggggggtaaatacatattaaccc 15839361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 20 - 137
Target Start/End: Original strand, 7122448 - 7122565
Alignment:
Q  20 ggtcagaggctaatatcaaagaatcttattttacagggttggaatttaaacnnnnnnnnnacaggggagtaaaccggaactcgtctaaattacagggggt 119  Q
    |||||| |||||| ||||||||||||||||||||||||||||||| |||||         | ||||| | ||||||||||||| | ||||||||||| |     
T  7122448 ggtcaggggctaaaatcaaagaatcttattttacagggttggaatctaaactttttttttataggggggaaaaccggaactcgcccaaattacagggagg 7122547  T
Q  120 taaatacatattaaccct 137  Q
    |||| |||||||||||||    
T  7122548 taaagacatattaaccct 7122565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 20 - 136
Target Start/End: Original strand, 40728214 - 40728331
Alignment:
Q  20 ggtcagaggctaatatcaaagaatcttattttacagggttggaatttaaac-nnnnnnnnnacaggggagtaaaccggaactcgtctaaattacaggggg 118  Q
    |||||| |||||| ||||||||||||||||||| ||||||||||| |||||          ||||||| | ||||||||||||| | |||||||||||||    
T  40728214 ggtcaggggctaaaatcaaagaatcttattttaaagggttggaatctaaacttttttttttacaggggggaaaaccggaactcgcccaaattacaggggg 40728313  T
Q  119 ttaaatacatattaaccc 136  Q
     |||| ||||||||||||    
T  40728314 gtaaagacatattaaccc 40728331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 27 - 136
Target Start/End: Complemental strand, 3859868 - 3859759
Alignment:
Q  27 ggctaatatcaaagaatcttattttacagggttggaatttaaacnnnnnnnnn-acaggggagtaaaccggaactcgtctaaattacagggggttaaata 125  Q
    |||||| |||||||||||||||||||||||||| |||| |||||          ||||||| ||||||||||||||| | ||||||||||||| |||| |    
T  3859868 ggctaaaatcaaagaatcttattttacagggttcgaatctaaacttttttttttacagggg-gtaaaccggaactcgcccaaattacaggggggtaaaca 3859770  T
Q  126 catattaaccc 136  Q
    |||||||||||    
T  3859769 catattaaccc 3859759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 21796553 - 21796603
Alignment:
Q  20 ggtcagaggctaatatcaaagaatcttattttacagggttggaatttaaac 70  Q
    |||||| |||||| ||||||||||||||||||||||||||||||| |||||    
T  21796553 ggtcaggggctaaaatcaaagaatcttattttacagggttggaatctaaac 21796603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 133
Target Start/End: Original strand, 25642666 - 25642782
Alignment:
Q  16 cataggtcagaggctaatatcaaagaatcttattttacagggttggaatttaaacnnnnnnnnnacaggggagtaaaccggaactcgtctaaattacagg 115  Q
    ||||||| || |||||| |||||| ||||||||||||| |||||||||| |||||         | |||||| |||||||||||||| | ||||||||||    
T  25642666 cataggtgaggggctaaaatcaaaaaatcttattttactgggttggaatctaaacgttttttttatagggga-taaaccggaactcgcccaaattacagg 25642764  T
Q  116 gggttaaatacatattaa 133  Q
    ||| |||| |||||||||    
T  25642765 ggggtaaagacatattaa 25642782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 42536256 - 42536206
Alignment:
Q  20 ggtcagaggctaatatcaaagaatcttattttacagggttggaatttaaac 70  Q
    |||||| |||||| ||||||||||||||||||||||||||||||| |||||    
T  42536256 ggtcaggggctaaaatcaaagaatcttattttacagggttggaatctaaac 42536206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 136
Target Start/End: Complemental strand, 3370244 - 3370128
Alignment:
Q  21 gtcagaggctaatatcaaagaatcttattttacagggttggaatttaaac-nnnnnnnnnacaggggagtaaaccggaactcgtctaaattacagggggt 119  Q
    ||||| |||||| ||||||||||||||||||||||||||| ||| |||||          |||||||   ||||||||||||| | |||||||||||||     
T  3370244 gtcaggggctaaaatcaaagaatcttattttacagggttgaaatctaaacttttttttttacagggggaaaaaccggaactcgcccaaattacagggggg 3370145  T
Q  120 taaatacatattaaccc 136  Q
    |||| ||||||||||||    
T  3370144 taaagacatattaaccc 3370128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 144 - 201
Target Start/End: Complemental strand, 39816562 - 39816505
Alignment:
Q  144 aattataaagcaggagtaccgatacacctcactttgtgaatctaccgtagaagttcct 201  Q
    |||||| ||||| |||||||| ||||||||||||||||| | ||||||||||||||||    
T  39816562 aattatgaagcaagagtaccggtacacctcactttgtgagtgtaccgtagaagttcct 39816505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 21716819 - 21716867
Alignment:
Q  22 tcagaggctaatatcaaagaatcttattttacagggttggaatttaaac 70  Q
    |||| |||||| ||||||||||||||||||||||||||||||| |||||    
T  21716819 tcaggggctaaaatcaaagaatcttattttacagggttggaatctaaac 21716867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 144 - 198
Target Start/End: Original strand, 13119148 - 13119202
Alignment:
Q  144 aattataaagcaggagtaccgatacacctcactttgtgaatctaccgtagaagtt 198  Q
    |||||| |||||||||||||| ||||||||||||||| | | |||||||||||||    
T  13119148 aattatgaagcaggagtaccggtacacctcactttgtaagtgtaccgtagaagtt 13119202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 88 - 141
Target Start/End: Original strand, 30668924 - 30668975
Alignment:
Q  88 gtaaaccggaactcgtctaaattacagggggttaaatacatattaacccttaat 141  Q
    ||||||||||||||| ||||||||||  ||| ||||||||||||||||||||||    
T  30668924 gtaaaccggaactcgcctaaattaca--gggataaatacatattaacccttaat 30668975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 31795935 - 31795885
Alignment:
Q  20 ggtcagaggctaatatcaaagaatcttattttacagggttggaatttaaac 70  Q
    |||||| |||||| | ||||||||||||||||||||||||||||| |||||    
T  31795935 ggtcaggggctaaaaccaaagaatcttattttacagggttggaatctaaac 31795885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 201
Target Start/End: Original strand, 702299 - 702356
Alignment:
Q  144 aattataaagcaggagtaccgatacacctcactttgtgaatctaccgtagaagttcct 201  Q
    |||||| ||||| |||||||| ||||||||| ||||||| | ||||||||||||||||    
T  702299 aattatgaagcaagagtaccggtacacctcattttgtgagtgtaccgtagaagttcct 702356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 200
Target Start/End: Original strand, 2852054 - 2852103
Alignment:
Q  151 aagcaggagtaccgatacacctcactttgtgaatctaccgtagaagttcc 200  Q
    ||||| |||||||||||||||||| ||||||| | |||||||||||||||    
T  2852054 aagcatgagtaccgatacacctcattttgtgagtgtaccgtagaagttcc 2852103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 82 - 135
Target Start/End: Original strand, 31175236 - 31175289
Alignment:
Q  82 aggggagtaaaccggaactcgtctaaattacagggggttaaatacatattaacc 135  Q
    ||||| |||||| |||||||| | |||||||||||||||||| |||||||||||    
T  31175236 aggggggtaaactggaactcggccaaattacagggggttaaagacatattaacc 31175289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 200
Target Start/End: Original strand, 33678514 - 33678563
Alignment:
Q  151 aagcaggagtaccgatacacctcactttgtgaatctaccgtagaagttcc 200  Q
    |||||||||||||||||||||||| ||||||| | |||| ||||||||||    
T  33678514 aagcaggagtaccgatacacctcattttgtgagtgtaccatagaagttcc 33678563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 200
Target Start/End: Complemental strand, 5204670 - 5204618
Alignment:
Q  149 taaagcaggagtaccgatacacctcactttgtga-atctaccgtagaagttcc 200  Q
    |||||||||||||||||||||||||| |||||||  | |||||||||||||||    
T  5204670 taaagcaggagtaccgatacacctcaatttgtgaggtgtaccgtagaagttcc 5204618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 140
Target Start/End: Complemental strand, 7121375 - 7121316
Alignment:
Q  80 acaggggagtaaaccggaactcgtctaaattacagggggttaaatacatattaacccttaa 140  Q
    ||||||| | ||||||||||||| | ||||||||||||| |||| ||||||||||||||||    
T  7121375 acaggggggaaaaccggaactcgcccaaattacaggggg-taaagacatattaacccttaa 7121316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 200
Target Start/End: Original strand, 13127330 - 13127386
Alignment:
Q  144 aattataaagcaggagtaccgatacacctcactttgtgaatctaccgtagaagttcc 200  Q
    |||||| ||| | |||||||| ||||||||| ||||||||| |||||||||||||||    
T  13127330 aattatgaagaaagagtaccggtacacctcattttgtgaatgtaccgtagaagttcc 13127386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 138
Target Start/End: Complemental strand, 21789594 - 21789547
Alignment:
Q  90 aaaccggaactcgtctaaattacagggggttaaatacatattaaccctt 138  Q
    ||||||||||||| ||||||||||||||| |||| ||||||||||||||    
T  21789594 aaaccggaactcgcctaaattacaggggg-taaagacatattaaccctt 21789547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 200
Target Start/End: Complemental strand, 36427954 - 36427906
Alignment:
Q  152 agcaggagtaccgatacacctcactttgtgaatctaccgtagaagttcc 200  Q
    |||| |||||||| ||||||||||||||||| | |||||||||||||||    
T  36427954 agcaagagtaccggtacacctcactttgtgagtgtaccgtagaagttcc 36427906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 139
Target Start/End: Original strand, 3371329 - 3371387
Alignment:
Q  80 acaggggagtaaaccggaactcgtctaaattacagggggttaaatacatattaaccctta 139  Q
    ||||||| | ||||||||||||| | ||||||||||||| |||| |||||||||||||||    
T  3371329 acaggggggaaaaccggaactcgcccaaattacaggggg-taaagacatattaaccctta 3371387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 63
Target Start/End: Original strand, 30668857 - 30668904
Alignment:
Q  16 cataggtcagaggctaatatcaaagaatcttattttacagggttggaa 63  Q
    ||||| |||| |||||| ||||||||||||||||||||| ||||||||    
T  30668857 catagatcaggggctaaaatcaaagaatcttattttacatggttggaa 30668904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 182
Target Start/End: Original strand, 5360075 - 5360113
Alignment:
Q  144 aattataaagcaggagtaccgatacacctcactttgtga 182  Q
    |||||| |||||||||||||||||||||||| |||||||    
T  5360075 aattatgaagcaggagtaccgatacacctcattttgtga 5360113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 200
Target Start/End: Complemental strand, 14434865 - 14434819
Alignment:
Q  154 caggagtaccgatacacctcactttgtgaatctaccgtagaagttcc 200  Q
    ||||||||||||||||||||| ||||||| | ||| |||||||||||    
T  14434865 caggagtaccgatacacctcattttgtgagtgtacagtagaagttcc 14434819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 201
Target Start/End: Complemental strand, 28318397 - 28318347
Alignment:
Q  151 aagcaggagtaccgatacacctcactttgtgaatctaccgtagaagttcct 201  Q
    |||||||||||||||||||||||| ||| | | | ||||||||||||||||    
T  28318397 aagcaggagtaccgatacacctcattttataagtgtaccgtagaagttcct 28318347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 198
Target Start/End: Original strand, 34259889 - 34259943
Alignment:
Q  144 aattataaagcaggagtaccgatacacctcactttgtgaatctaccgtagaagtt 198  Q
    |||||| |||||||||||||| || |||||||||||| | | |||||||||||||    
T  34259889 aattatgaagcaggagtaccggtagacctcactttgttagtataccgtagaagtt 34259943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 200
Target Start/End: Complemental strand, 40756592 - 40756542
Alignment:
Q  151 aagcaggagtaccgatacacctcactttgtga-atctaccgtagaagttcc 200  Q
    |||||||||||||||||||||||| |||||||  | |||||||||||||||    
T  40756592 aagcaggagtaccgatacacctcaatttgtgaggtgtaccgtagaagttcc 40756542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 199
Target Start/End: Complemental strand, 9604477 - 9604433
Alignment:
Q  155 aggagtaccgatacacctcactttgtgaatctaccgtagaagttc 199  Q
    |||||||||| ||||||||| ||||||| | ||||||||||||||    
T  9604477 aggagtaccggtacacctcattttgtgagtgtaccgtagaagttc 9604433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 200
Target Start/End: Complemental strand, 42486662 - 42486606
Alignment:
Q  144 aattataaagcaggagtaccgatacacctcactttgtgaatctaccgtagaagttcc 200  Q
    |||||| ||| | |||||||| ||||||||||||||||| | |||||||||| ||||    
T  42486662 aattatgaagtatgagtaccggtacacctcactttgtgagtgtaccgtagaaattcc 42486606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 6e-24; HSPs: 45)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 16 - 135
Target Start/End: Complemental strand, 468335 - 468216
Alignment:
Q  16 cataggtcagaggctaatatcaaagaatcttattttacagggttggaatttaaacnnnnnnnnnacaggggagtaaaccggaactcgtctaaattacagg 115  Q
    |||| ||||| |||||| |||||||||||||||||| |||||||||||| |||||         ||||||| ||||||||||||||| ||||||||||||    
T  468335 cataagtcaggggctaaaatcaaagaatcttatttttcagggttggaatctaaactttttttttacaggggggtaaaccggaactcgcctaaattacagg 468236  T
Q  116 gggttaaatacatattaacc 135  Q
    ||| ||||||| ||||||||    
T  468235 ggggtaaatacctattaacc 468216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 20 - 138
Target Start/End: Original strand, 25439066 - 25439184
Alignment:
Q  20 ggtcagaggctaatatcaaagaatcttattttacagggttggaatttaaacnnnnnnnnnacaggggagtaaaccggaactcgtctaaattacagggggt 119  Q
    |||||| |||||| ||||||||||||||||||||||||||||||| |||||         ||||||| | ||||||||||||| | |||||||| ||||     
T  25439066 ggtcaggggctaaaatcaaagaatcttattttacagggttggaatctaaactttttttttacaggggggaaaaccggaactcgcccaaattacaaggggg 25439165  T
Q  120 taaatacatattaaccctt 138  Q
    |||| ||||||||||||||    
T  25439166 taaagacatattaaccctt 25439184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 20 - 152
Target Start/End: Original strand, 34423160 - 34423293
Alignment:
Q  20 ggtcagaggctaatatcaaagaatcttattttacagggttggaatttaaac-nnnnnnnnnacaggggagtaaaccggaactcgtctaaattacaggggg 118  Q
    |||||| |||||| ||||||||||||||||||||||||||||||| |||||          ||||||| | ||||||||||||| | |||||||||||||    
T  34423160 ggtcaggggctaaaatcaaagaatcttattttacagggttggaatctaaacttttttttttacaggggggaaaaccggaactcgcccaaattacaggggg 34423259  T
Q  119 ttaaatacatattaacccttaatacaattataaa 152  Q
     |||| ||||||||||||| |||| ||| |||||    
T  34423260 gtaaagacatattaaccctaaatataatgataaa 34423293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 17 - 140
Target Start/End: Complemental strand, 2712091 - 2711971
Alignment:
Q  17 ataggtcagaggctaatatcaaagaatcttattttacagggttggaatttaaacnnnnnnnnnacaggggagtaaaccggaactcgtctaaattacaggg 116  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||||  ||||         |||||||| |||||||||||||| ||||||||||  |    
T  2712091 ataggtcag-ggctaaaatcaaagaatcttattttacagggttggaatcgaaactttttttttacaggggaataaaccggaactcgcctaaattaca--g 2711995  T
Q  117 ggttaaatacatattaacccttaa 140  Q
    || |||||||||||||||| ||||    
T  2711994 ggataaatacatattaacctttaa 2711971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 16 - 142
Target Start/End: Complemental strand, 21075276 - 21075151
Alignment:
Q  16 cataggtcagaggctaatatcaaagaatcttattttacagggttggaatttaaacnnnnnnnnn-acaggggagtaaaccggaactcgtctaaattacag 114  Q
    |||||||||| | |||| ||||||||||||||||||||| ||||||||| |||||          |||||||| |||||||||||||| |||||||||||    
T  21075276 cataggtcagcgactaaaatcaaagaatcttattttacaaggttggaatctaaacttttttttttacagggga-taaaccggaactcgcctaaattacag 21075178  T
Q  115 ggggttaaatacatattaacccttaata 142  Q
    |||| |||||||||||||||||| ||||    
T  21075177 gggg-taaatacatattaaccctaaata 21075151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 20 - 138
Target Start/End: Original strand, 30607133 - 30607252
Alignment:
Q  20 ggtcagaggctaatatcaaagaatcttattttacagggttggaatttaaac-nnnnnnnnnacaggggagtaaaccggaactcgtctaaattacaggggg 118  Q
    |||||| |||||| ||||||||||||||||||||||||||||||| |||||          ||||||| | ||||||||||||| | |||||||||||||    
T  30607133 ggtcaggggctaaaatcaaagaatcttattttacagggttggaatctaaacttttttttttacaggggggaaaaccggaactcgcccaaattacaggggg 30607232  T
Q  119 ttaaatacatattaaccctt 138  Q
     |||| ||||||||||||||    
T  30607233 gtaaagacatattaaccctt 30607252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 16 - 138
Target Start/End: Complemental strand, 33268311 - 33268191
Alignment:
Q  16 cataggtcagaggctaatatcaaagaatcttattttacagggttggaatttaaacnnnnnnnnnacaggggagtaaaccggaactcgtctaaattacagg 115  Q
    |||||||||| |||||| ||||||||||||||||||||||||||||||| |||||         ||||||  |||||||| |||||| |||||||| |||    
T  33268311 cataggtcaggggctaaaatcaaagaatcttattttacagggttggaatctaaactttttttttacaggg--gtaaaccgaaactcgcctaaattatagg 33268214  T
Q  116 gggttaaatacatattaaccctt 138  Q
     || |||||||||||||| ||||    
T  33268213 agggtaaatacatattaaacctt 33268191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 80 - 138
Target Start/End: Original strand, 21077126 - 21077184
Alignment:
Q  80 acaggggagtaaaccggaactcgtctaaattacagggggttaaatacatattaaccctt 138  Q
    ||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||||    
T  21077126 acaggggagtaaaccggaactcgcccaaattacaggggggtaaatacatattaaccctt 21077184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 20 - 138
Target Start/End: Complemental strand, 48181941 - 48181822
Alignment:
Q  20 ggtcagaggctaatatcaaagaatcttattttacagggttggaatttaaac-nnnnnnnnnacaggggagtaaaccggaactcgtctaaattacaggggg 118  Q
    |||||| |||||| ||||||||||||||||||||||||||||||| |||||          | ||||| | ||||||||||||| | |||||||||||||    
T  48181941 ggtcaggggctaaaatcaaagaatcttattttacagggttggaatctaaacttttttttttataggggggaaaaccggaactcgcccaaattacaggggg 48181842  T
Q  119 ttaaatacatattaaccctt 138  Q
     |||| ||||||||||||||    
T  48181841 gtaaagacatattaaccctt 48181822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 144 - 200
Target Start/End: Complemental strand, 33491219 - 33491163
Alignment:
Q  144 aattataaagcaggagtaccgatacacctcactttgtgaatctaccgtagaagttcc 200  Q
    |||||| |||||||||||||| |||| |||||||||||||| |||||||||||||||    
T  33491219 aattatgaagcaggagtaccggtacatctcactttgtgaatgtaccgtagaagttcc 33491163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 138
Target Start/End: Complemental strand, 40314332 - 40314214
Alignment:
Q  20 ggtcagaggctaatatcaaagaatcttattttacagggttggaatttaaac-nnnnnnnnnacaggggagtaaaccggaactcgtctaaattacaggggg 118  Q
    |||||| |||||| ||||||||||||||||||||||||||||||| |||||          ||||||| | ||||||||||||| | |||||||||| ||    
T  40314332 ggtcaggggctaaaatcaaagaatcttattttacagggttggaatctaaacttttttttttacaggggggaaaaccggaactcgcccaaattacaggagg 40314233  T
Q  119 ttaaatacatattaaccctt 138  Q
     |||| ||||||||||||||    
T  40314232 -taaagacatattaaccctt 40314214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 138
Target Start/End: Complemental strand, 40324408 - 40324290
Alignment:
Q  20 ggtcagaggctaatatcaaagaatcttattttacagggttggaatttaaac-nnnnnnnnnacaggggagtaaaccggaactcgtctaaattacaggggg 118  Q
    |||||| |||||| ||||||||||||||||||||||||||||||| |||||          ||||||| | ||||||||||||| | |||||||||| ||    
T  40324408 ggtcaggggctaaaatcaaagaatcttattttacagggttggaatctaaacttttttttttacaggggggaaaaccggaactcgcccaaattacaggagg 40324309  T
Q  119 ttaaatacatattaaccctt 138  Q
     |||| ||||||||||||||    
T  40324308 -taaagacatattaaccctt 40324290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 16 - 141
Target Start/End: Original strand, 46080479 - 46080603
Alignment:
Q  16 cataggtcagaggctaatatcaaagaatcttattttacagggttggaatttaaac-nnnnnnnnnacaggggagtaaaccggaactcgtctaaattacag 114  Q
    |||||||||| |||||| ||||||||||||||||||| ||||||||||| |||||          ||||||| |||||| ||||||  |||||||||||     
T  46080479 cataggtcaggggctaaaatcaaagaatcttattttagagggttggaatctaaactttttcttttacagggg-gtaaactggaacttatctaaattaca- 46080576  T
Q  115 ggggttaaatacatattaacccttaat 141  Q
    ||||  |||||||||||||||||||||    
T  46080577 ggggacaaatacatattaacccttaat 46080603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 21464047 - 21464097
Alignment:
Q  20 ggtcagaggctaatatcaaagaatcttattttacagggttggaatttaaac 70  Q
    |||||| |||||| ||||||||||||||||||||||||||||||| |||||    
T  21464047 ggtcaggggctaaaatcaaagaatcttattttacagggttggaatctaaac 21464097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 144 - 200
Target Start/End: Complemental strand, 27761457 - 27761401
Alignment:
Q  144 aattataaagcaggagtaccgatacacctcactttgtgaatctaccgtagaagttcc 200  Q
    |||||| ||||| |||||||||||||||||||||||||| | |||||||||| ||||    
T  27761457 aattatgaagcaagagtaccgatacacctcactttgtgagtgtaccgtagaaattcc 27761401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 80 - 135
Target Start/End: Original strand, 21021229 - 21021284
Alignment:
Q  80 acaggggagtaaaccggaactcgtctaaattacagggggttaaatacatattaacc 135  Q
    ||||||| ||||||||||||||| | ||||||||||||| |||| |||||||||||    
T  21021229 acaggggggtaaaccggaactcgcccaaattacaggggggtaaaaacatattaacc 21021284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 137
Target Start/End: Complemental strand, 25437976 - 25437929
Alignment:
Q  90 aaaccggaactcgtctaaattacagggggttaaatacatattaaccct 137  Q
    ||||||||||||||| ||||||||||||| |||| |||||||||||||    
T  25437976 aaaccggaactcgtccaaattacaggggggtaaagacatattaaccct 25437929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 199
Target Start/End: Original strand, 56303187 - 56303242
Alignment:
Q  144 aattataaagcaggagtaccgatacacctcactttgtgaatctaccgtagaagttc 199  Q
    ||||||||||||||||||||| ||||||||||||| ||| | |||| |||||||||    
T  56303187 aattataaagcaggagtaccggtacacctcactttatgagtgtaccatagaagttc 56303242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 23019117 - 23019067
Alignment:
Q  20 ggtcagaggctaatatcaaagaatcttattttacagggttggaatttaaac 70  Q
    |||||| |||||| |||||| |||||||||||||||||||||||| |||||    
T  23019117 ggtcaggggctaaaatcaaataatcttattttacagggttggaatctaaac 23019067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 144 - 198
Target Start/End: Original strand, 31999074 - 31999128
Alignment:
Q  144 aattataaagcaggagtaccgatacacctcactttgtgaatctaccgtagaagtt 198  Q
    |||||| ||||| |||||||||||||||||||||| ||| | |||||||||||||    
T  31999074 aattatgaagcaagagtaccgatacacctcactttatgagtgtaccgtagaagtt 31999128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 80 - 142
Target Start/End: Original strand, 48183186 - 48183247
Alignment:
Q  80 acaggggagtaaaccggaactcgtctaaattacagggggttaaatacatattaacccttaata 142  Q
    ||||||| | ||||||||||||| | ||||||||||||| |||| ||||||||||||||||||    
T  48183186 acaggggggaaaaccggaactcgcccaaattacaggggg-taaagacatattaacccttaata 48183247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 200
Target Start/End: Original strand, 126934 - 126983
Alignment:
Q  151 aagcaggagtaccgatacacctcactttgtgaatctaccgtagaagttcc 200  Q
    |||||||||||||||||||||||| ||| ||| | |||||||||||||||    
T  126934 aagcaggagtaccgatacacctcattttatgagtgtaccgtagaagttcc 126983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 200
Target Start/End: Original strand, 1857160 - 1857209
Alignment:
Q  151 aagcaggagtaccgatacacctcactttgtgaatctaccgtagaagttcc 200  Q
    |||||||||||||| ||||||||| ||||||| | |||||||||||||||    
T  1857160 aagcaggagtaccggtacacctcattttgtgagtgtaccgtagaagttcc 1857209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 10671445 - 10671494
Alignment:
Q  21 gtcagaggctaatatcaaagaatcttattttacagggttggaatttaaac 70  Q
    ||||| |||||| ||||||||||||||||||||||||||| ||| |||||    
T  10671445 gtcaggggctaaaatcaaagaatcttattttacagggttgaaatctaaac 10671494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 10885085 - 10885134
Alignment:
Q  21 gtcagaggctaatatcaaagaatcttattttacagggttggaatttaaac 70  Q
    ||||| |||||| ||||||||||||||||||||||||||| ||| |||||    
T  10885085 gtcaggggctaaaatcaaagaatcttattttacagggttgaaatctaaac 10885134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 201
Target Start/End: Original strand, 29364531 - 29364588
Alignment:
Q  144 aattataaagcaggagtaccgatacacctcactttgtgaatctaccgtagaagttcct 201  Q
    ||||| ||||||||||||||| ||||||||| ||||||| | ||| ||||||||||||    
T  29364531 aattaaaaagcaggagtaccggtacacctcattttgtgagtgtacagtagaagttcct 29364588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 138
Target Start/End: Complemental strand, 4493737 - 4493689
Alignment:
Q  90 aaaccggaactcgtctaaattacagggggttaaatacatattaaccctt 138  Q
    ||||||||||||| | ||||||||||||| |||| ||||||||||||||    
T  4493737 aaaccggaactcgcccaaattacaggggggtaaagacatattaaccctt 4493689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 136
Target Start/End: Original strand, 4499789 - 4499845
Alignment:
Q  80 acaggggagtaaaccggaactcgtctaaattacagggggttaaatacatattaaccc 136  Q
    ||||||| | ||||||||||||| | ||||||||||||| |||| ||||||||||||    
T  4499789 acaggggggaaaaccggaactcgcccaaattacaggggggtaaagacatattaaccc 4499845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 200
Target Start/End: Original strand, 31975903 - 31975955
Alignment:
Q  149 taaagcaggagtaccgatacacctcactttgtga-atctaccgtagaagttcc 200  Q
    ||||||||||||||||||| |||||| |||||||  |||||||||||||||||    
T  31975903 taaagcaggagtaccgatagacctcaatttgtgaggtctaccgtagaagttcc 31975955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 200
Target Start/End: Complemental strand, 42177399 - 42177343
Alignment:
Q  144 aattataaagcaggagtaccgatacacctcactttgtgaatctaccgtagaagttcc 200  Q
    |||||| ||| | |||||||||||||||||| ||||||| | |||||||||||||||    
T  42177399 aattatgaagaaagagtaccgatacacctcattttgtgagtgtaccgtagaagttcc 42177343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 137
Target Start/End: Original strand, 42251501 - 42251541
Alignment:
Q  97 aactcgtctaaattacagggggttaaatacatattaaccct 137  Q
    |||||||||||||||||| ||| ||||||||||||||||||    
T  42251501 aactcgtctaaattacagaggggtaaatacatattaaccct 42251541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 139
Target Start/End: Complemental strand, 34422108 - 34422049
Alignment:
Q  80 acaggggagtaaaccggaactcgtctaaattacagggggttaaatacatattaaccctta 139  Q
    ||||||| | |||||| |||||| | ||||||||||||| |||| |||||||||||||||    
T  34422108 acaggggggaaaaccgaaactcgcccaaattacaggggggtaaagacatattaaccctta 34422049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 138
Target Start/End: Complemental strand, 46079188 - 46079139
Alignment:
Q  88 gtaaaccggaactcgtctaaattacagggggttaaatacatattaaccctt 138  Q
    ||||||||||||||| | ||||||||||||| |||| ||||||||||||||    
T  46079188 gtaaaccggaactcgcccaaattacaggggg-taaaaacatattaaccctt 46079139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 88 - 141
Target Start/End: Original strand, 1968234 - 1968287
Alignment:
Q  88 gtaaaccggaactcgtctaaattacagggggttaaatacatattaacccttaat 141  Q
    ||||| ||||||||||| |||||||| | || |||| |||||||||||||||||    
T  1968234 gtaaatcggaactcgtccaaattacaagagggtaaagacatattaacccttaat 1968287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 151 - 200
Target Start/End: Original strand, 4720827 - 4720876
Alignment:
Q  151 aagcaggagtaccgatacacctcactttgtgaatctaccgtagaagttcc 200  Q
    |||||||||||||||||||||||| ||| ||| | ||||||| |||||||    
T  4720827 aagcaggagtaccgatacacctcattttatgagtgtaccgtataagttcc 4720876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 144 - 201
Target Start/End: Complemental strand, 5970756 - 5970699
Alignment:
Q  144 aattataaagcaggagtaccgatacacctcactttgtgaatctaccgtagaagttcct 201  Q
    |||||| ||||| |||||||| |||| |||||| ||||| | ||||||||||||||||    
T  5970756 aattatgaagcaagagtaccggtacatctcactatgtgagtgtaccgtagaagttcct 5970699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 151 - 200
Target Start/End: Complemental strand, 27990586 - 27990537
Alignment:
Q  151 aagcaggagtaccgatacacctcactttgtgaatctaccgtagaagttcc 200  Q
    |||||||||||||| ||||||||| ||||||| | || ||||||||||||    
T  27990586 aagcaggagtaccggtacacctcattttgtgagtgtatcgtagaagttcc 27990537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 80 - 137
Target Start/End: Complemental strand, 30606081 - 30606024
Alignment:
Q  80 acaggggagtaaaccggaactcgtctaaattacagggggttaaatacatattaaccct 137  Q
    ||||||| | |||||| |||||| | ||||||||||||| |||| |||||||||||||    
T  30606081 acaggggggaaaaccgaaactcgcccaaattacaggggggtaaagacatattaaccct 30606024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 80 - 137
Target Start/End: Original strand, 40315383 - 40315440
Alignment:
Q  80 acaggggagtaaaccggaactcgtctaaattacagggggttaaatacatattaaccct 137  Q
    ||||||| | ||||||||||||| | ||||||||||||| |||| |||||||| ||||    
T  40315383 acaggggggaaaaccggaactcgcccaaattacaggggggtaaagacatattatccct 40315440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 80 - 137
Target Start/End: Original strand, 40325458 - 40325515
Alignment:
Q  80 acaggggagtaaaccggaactcgtctaaattacagggggttaaatacatattaaccct 137  Q
    ||||||| | ||||||||||||| | ||||||||||||| |||| |||||||| ||||    
T  40325458 acaggggggaaaaccggaactcgcccaaattacaggggggtaaagacatattatccct 40325515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 91 - 136
Target Start/End: Complemental strand, 42250182 - 42250138
Alignment:
Q  91 aaccggaactcgtctaaattacagggggttaaatacatattaaccc 136  Q
    |||||||||||| | ||||||||||||| |||||||||||||||||    
T  42250182 aaccggaactcgcccaaattacaggggg-taaatacatattaaccc 42250138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 46577024 - 46577073
Alignment:
Q  21 gtcagaggctaatatcaaagaatcttattttacagggttggaatttaaac 70  Q
    ||||| |||||| | ||||||||||||| ||||||||||||||| |||||    
T  46577024 gtcaggggctaaaaccaaagaatcttatgttacagggttggaatctaaac 46577073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 144 - 201
Target Start/End: Original strand, 54996452 - 54996509
Alignment:
Q  144 aattataaagcaggagtaccgatacacctcactttgtgaatctaccgtagaagttcct 201  Q
    |||||| || ||||||||||| ||||||||||||| ||||| |||  |||||||||||    
T  54996452 aattatgaaacaggagtaccgttacacctcactttatgaatgtactatagaagttcct 54996509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 21020150 - 21020110
Alignment:
Q  20 ggtcagaggctaatatcaaagaatcttattttacagggttg 60  Q
    |||||| |||||| | |||||||||||||||||||||||||    
T  21020150 ggtcaggggctaaaaccaaagaatcttattttacagggttg 21020110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 56
Target Start/End: Complemental strand, 48508405 - 48508369
Alignment:
Q  20 ggtcagaggctaatatcaaagaatcttattttacagg 56  Q
    |||||| |||||| |||||||||||||||||||||||    
T  48508405 ggtcaggggctaaaatcaaagaatcttattttacagg 48508369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 9e-23; HSPs: 35)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 16 - 137
Target Start/End: Original strand, 37747361 - 37747481
Alignment:
Q  16 cataggtcagaggctaatatcaaagaatcttattttacagggttggaatttaaacnnnnnnnnnacaggggagtaaaccggaactcgtctaaattacagg 115  Q
    |||||||||| |||||| |||||| |||||||||||||||||||||||| |||||         || |||  ||||||||||||||| ||||||||||||    
T  37747361 cataggtcaggggctaaaatcaaataatcttattttacagggttggaatctaaactttttttttactgggaggtaaaccggaactcgcctaaattacagg 37747460  T
Q  116 gggttaaatacatattaaccct 137  Q
    ||| ||||||||||||||||||    
T  37747461 ggg-taaatacatattaaccct 37747481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 16 - 129
Target Start/End: Original strand, 11847037 - 11847152
Alignment:
Q  16 cataggtcagaggctaatatcaaagaatcttattttacagggttggaatttaaac--nnnnnnnnnacaggggagtaaaccggaactcgtctaaattaca 113  Q
    |||||||||| |||||| ||||||||||||||||||||||||||||||| |||||           ||||||| ||||||||||||||| ||||||||||    
T  11847037 cataggtcaggggctaaaatcaaagaatcttattttacagggttggaatctaaactttttttttttacaggggggtaaaccggaactcgcctaaattaca 11847136  T
Q  114 gggggttaaatacata 129  Q
    ||||| ||||||||||    
T  11847137 ggggggtaaatacata 11847152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 20 - 137
Target Start/End: Original strand, 27251060 - 27251178
Alignment:
Q  20 ggtcagaggctaatatcaaagaatcttattttacagggttggaatttaaac-nnnnnnnnnacaggggagtaaaccggaactcgtctaaattacaggggg 118  Q
    |||||| |||||| ||||||||||||||||||||||||||||||| |||||          ||||||| | ||||||||||||| | |||||| ||||||    
T  27251060 ggtcaggggctaaaatcaaagaatcttattttacagggttggaatctaaacttttttttttacaggggggaaaaccggaactcgcccaaattataggggg 27251159  T
Q  119 ttaaatacatattaaccct 137  Q
     |||| |||||||||||||    
T  27251160 gtaaagacatattaaccct 27251178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 27 - 139
Target Start/End: Original strand, 15993719 - 15993830
Alignment:
Q  27 ggctaatatcaaagaatcttattttacagggttggaatttaaacnnnnnnnnn-acaggggagtaaaccggaactcgtctaaattacagggggttaaata 125  Q
    |||||| ||||||||||  ||||||||||||||||||| |||||          ||||||| ||||||||||||||| ||||||||||||||| ||||||    
T  15993719 ggctaaaatcaaagaattgtattttacagggttggaatctaaacatttttttttacagggg-gtaaaccggaactcgcctaaattacaggggg-taaata 15993816  T
Q  126 catattaaccctta 139  Q
    ||||||||||||||    
T  15993817 catattaaccctta 15993830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 136
Target Start/End: Complemental strand, 32041072 - 32040953
Alignment:
Q  16 cataggtcagaggctaatatcaaagaatcttattttacagggttggaatttaaacnnnnnnnnn-acaggggagtaaaccggaactcgtctaaattacag 114  Q
    |||||||||| |||||| ||||||||||||||||||||||  || |||| |||||          ||||||| ||||||||||||||| |||||||||||    
T  32041072 cataggtcaggggctaaaatcaaagaatcttattttacagaatttgaatctaaacttttttttttacagggg-gtaaaccggaactcgcctaaattacag 32040974  T
Q  115 ggggttaaatacatattaaccc 136  Q
    |||| |||||||||||||||||    
T  32040973 gggg-taaatacatattaaccc 32040953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 70
Target Start/End: Original strand, 35359226 - 35359280
Alignment:
Q  16 cataggtcagaggctaatatcaaagaatcttattttacagggttggaatttaaac 70  Q
    |||||||||| |||||| ||||||||||||||||||||||||||||||| |||||    
T  35359226 cataggtcaggggctaaaatcaaagaatcttattttacagggttggaatctaaac 35359280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 20 - 140
Target Start/End: Original strand, 39050582 - 39050702
Alignment:
Q  20 ggtcagaggctaatatcaaagaatcttattttacagggttggaatttaaac-nnnnnnnnnacaggggagtaaaccggaactcgtctaaattacaggggg 118  Q
    |||||| |||||| ||||||||||||||||||||||| ||||||| |||||          ||||||| | ||||||||||||| | |||||||||||||    
T  39050582 ggtcaggggctaaaatcaaagaatcttattttacaggattggaatctaaacttttttttttacagggg-gaaaaccggaactcgcccaaattacaggggg 39050680  T
Q  119 ttaaatacatattaacccttaa 140  Q
     |||| ||||||||||||||||    
T  39050681 gtaaagacatattaacccttaa 39050702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 27 - 142
Target Start/End: Complemental strand, 48989386 - 48989273
Alignment:
Q  27 ggctaatatcaaagaatcttattttacagggttggaatttaaacnnnnnnnnnacaggggagtaaaccggaactcgtctaaattacagggggttaaatac 126  Q
    |||||| |||||| |||||||||||||||||||||||| |||||         ||||||| |||||||| || ||| | ||||||||||||| |||| ||    
T  48989386 ggctaaaatcaaaaaatcttattttacagggttggaatctaaactttttttttacagggg-gtaaaccgaaagtcgcccaaattacaggggg-taaagac 48989289  T
Q  127 atattaacccttaata 142  Q
    ||||||||||||||||    
T  48989288 atattaacccttaata 48989273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 7469185 - 7469235
Alignment:
Q  20 ggtcagaggctaatatcaaagaatcttattttacagggttggaatttaaac 70  Q
    |||||| |||||| ||||||||||||||||||||||||||||||| |||||    
T  7469185 ggtcaggggctaaaatcaaagaatcttattttacagggttggaatctaaac 7469235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 28241758 - 28241808
Alignment:
Q  20 ggtcagaggctaatatcaaagaatcttattttacagggttggaatttaaac 70  Q
    |||||| |||||| ||||||||||||||||||||||||||||||| |||||    
T  28241758 ggtcaggggctaaaatcaaagaatcttattttacagggttggaatctaaac 28241808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 80 - 137
Target Start/End: Complemental strand, 44377518 - 44377461
Alignment:
Q  80 acaggggagtaaaccggaactcgtctaaattacagggggttaaatacatattaaccct 137  Q
    ||||||| ||||||||||||||| | ||||||||||||| |||| |||||||||||||    
T  44377518 acaggggggtaaaccggaactcgcccaaattacaggggggtaaagacatattaaccct 44377461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 80 - 137
Target Start/End: Complemental strand, 44386385 - 44386328
Alignment:
Q  80 acaggggagtaaaccggaactcgtctaaattacagggggttaaatacatattaaccct 137  Q
    ||||||| ||||||||||||||| | ||||||||||||| |||| |||||||||||||    
T  44386385 acaggggggtaaaccggaactcgcccaaattacaggggggtaaagacatattaaccct 44386328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 151 - 200
Target Start/End: Complemental strand, 46575151 - 46575102
Alignment:
Q  151 aagcaggagtaccgatacacctcactttgtgaatctaccgtagaagttcc 200  Q
    |||||||||||||| ||||||||| ||||||||| |||||||||||||||    
T  46575151 aagcaggagtaccggtacacctcattttgtgaatgtaccgtagaagttcc 46575102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 88 - 140
Target Start/End: Complemental strand, 15992377 - 15992325
Alignment:
Q  88 gtaaaccggaactcgtctaaattacagggggttaaatacatattaacccttaa 140  Q
    ||||||||||||||| | ||||||||||||| |||| ||||||||||||||||    
T  15992377 gtaaaccggaactcgcccaaattacaggggggtaaagacatattaacccttaa 15992325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 138
Target Start/End: Original strand, 44378644 - 44378761
Alignment:
Q  21 gtcagaggctaatatcaaagaatcttattttacagggttggaatttaaacnnnnnnnnn-acaggggagtaaaccggaactcgtctaaattacagggggt 119  Q
    ||||| |||||| ||||||||||||||| |||| |||||||||| |||||          ||||||| | ||||||||||||| | |||||| ||||||     
T  44378644 gtcaggggctaaaatcaaagaatcttatgttacggggttggaatctaaacttttttttttacagggg-gaaaaccggaactcgcccaaattagagggggg 44378742  T
Q  120 taaatacatattaaccctt 138  Q
    |||||||||||||||||||    
T  44378743 taaatacatattaaccctt 44378761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 138
Target Start/End: Original strand, 44387511 - 44387628
Alignment:
Q  21 gtcagaggctaatatcaaagaatcttattttacagggttggaatttaaacnnnnnnnnn-acaggggagtaaaccggaactcgtctaaattacagggggt 119  Q
    ||||| |||||| ||||||||||||||| |||| |||||||||| |||||          ||||||| | ||||||||||||| | |||||| ||||||     
T  44387511 gtcaggggctaaaatcaaagaatcttatgttacggggttggaatctaaacttttttttttacagggg-gaaaaccggaactcgcccaaattagagggggg 44387609  T
Q  120 taaatacatattaaccctt 138  Q
    |||||||||||||||||||    
T  44387610 taaatacatattaaccctt 44387628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 23152057 - 23152107
Alignment:
Q  20 ggtcagaggctaatatcaaagaatcttattttacagggttggaatttaaac 70  Q
    |||||| |||||| ||||||||||||||||||||||||||| ||| |||||    
T  23152057 ggtcaggggctaaaatcaaagaatcttattttacagggttgtaatctaaac 23152107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 44523467 - 44523517
Alignment:
Q  20 ggtcagaggctaatatcaaagaatcttattttacagggttggaatttaaac 70  Q
    |||||| |||||| || |||||||||||||||||||||||||||| |||||    
T  44523467 ggtcaggggctaaaattaaagaatcttattttacagggttggaatctaaac 44523517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 200
Target Start/End: Original strand, 3214887 - 3214931
Alignment:
Q  156 ggagtaccgatacacctcactttgtgaatctaccgtagaagttcc 200  Q
    ||||||||| ||||||||||||||||| | |||||||||||||||    
T  3214887 ggagtaccggtacacctcactttgtgagtgtaccgtagaagttcc 3214931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 200
Target Start/End: Complemental strand, 23406709 - 23406653
Alignment:
Q  144 aattataaagcaggagtaccgatacacctcactttgtgaatctaccgtagaagttcc 200  Q
    |||||| |||||||||||||| ||||||||| ||||||| | ||||||| |||||||    
T  23406709 aattatgaagcaggagtaccggtacacctcattttgtgagtgtaccgtataagttcc 23406653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 200
Target Start/End: Complemental strand, 26605113 - 26605057
Alignment:
Q  144 aattataaagcaggagtaccgatacacctcactttgtgaatctaccgtagaagttcc 200  Q
    |||||| ||||| |||||||| ||||||||| ||||||| | |||||||||||||||    
T  26605113 aattatgaagcaagagtaccggtacacctcattttgtgagtgtaccgtagaagttcc 26605057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 200
Target Start/End: Complemental strand, 5582905 - 5582862
Alignment:
Q  157 gagtaccgatacacctcactttgtgaatctaccgtagaagttcc 200  Q
    |||||||||||||| ||||||||||| | |||||||||||||||    
T  5582905 gagtaccgatacacatcactttgtgagtgtaccgtagaagttcc 5582862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 69
Target Start/End: Original strand, 6907216 - 6907251
Alignment:
Q  34 atcaaagaatcttattttacagggttggaatttaaa 69  Q
    ||||||||||||||||||| ||||||||||||||||    
T  6907216 atcaaagaatcttattttatagggttggaatttaaa 6907251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 64
Target Start/End: Original strand, 11652421 - 11652464
Alignment:
Q  21 gtcagaggctaatatcaaagaatcttattttacagggttggaat 64  Q
    ||||| |||||| |||||| ||||||||||||||||||||||||    
T  11652421 gtcaggggctaaaatcaaataatcttattttacagggttggaat 11652464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 70
Target Start/End: Original strand, 21521471 - 21521514
Alignment:
Q  27 ggctaatatcaaagaatcttattttacagggttggaatttaaac 70  Q
    |||||| ||||||||||||||||||||||| ||||||| |||||    
T  21521471 ggctaaaatcaaagaatcttattttacaggattggaatctaaac 21521514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 138
Target Start/End: Complemental strand, 21520491 - 21520442
Alignment:
Q  88 gtaaaccggaactcgtctaaattacagggggttaaatacatattaaccctt 138  Q
    |||| |||||||||| |||||||||||||||| |||| |||||||||||||    
T  21520491 gtaagccggaactcgcctaaattacagggggtaaaat-catattaaccctt 21520442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 138
Target Start/End: Original strand, 32042978 - 32043027
Alignment:
Q  88 gtaaaccggaactcgtctaaattacagggggttaaatacatattaaccctt 138  Q
    |||||||| |||||||| ||||||||||||| |||| ||||||||||||||    
T  32042978 gtaaaccgaaactcgtccaaattacaggggg-taaagacatattaaccctt 32043027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 134
Target Start/End: Complemental strand, 39049994 - 39049940
Alignment:
Q  80 acaggggagtaaaccggaactcgtctaaattacagggggttaaatacatattaac 134  Q
    ||||||| | ||||||||||||| | ||||||||||||| |||| ||||||||||    
T  39049994 acaggggggaaaaccggaactcgccaaaattacaggggggtaaagacatattaac 39049940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 157 - 198
Target Start/End: Complemental strand, 41968476 - 41968435
Alignment:
Q  157 gagtaccgatacacctcactttgtgaatctaccgtagaagtt 198  Q
    |||||||||||||||||| ||||||| | |||||||||||||    
T  41968476 gagtaccgatacacctcattttgtgagtgtaccgtagaagtt 41968435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 200
Target Start/End: Original strand, 5215378 - 5215430
Alignment:
Q  149 taaagcaggagtaccgatacacctcactttgtga-atctaccgtagaagttcc 200  Q
    |||||||||||||||| ||||||||| |||||||  | |||||||||||||||    
T  5215378 taaagcaggagtaccggtacacctcaatttgtgatgtgtaccgtagaagttcc 5215430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 136
Target Start/End: Complemental strand, 11651387 - 11651340
Alignment:
Q  88 gtaaaccggaactcgtctaaattacagggggttaaatacatattaaccc 136  Q
    ||||||||||||||| | ||||||||||||| |||| ||||||||||||    
T  11651387 gtaaaccggaactcgcccaaattacaggggg-taaagacatattaaccc 11651340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 199
Target Start/End: Original strand, 15716266 - 15716310
Alignment:
Q  155 aggagtaccgatacacctcactttgtgaatctaccgtagaagttc 199  Q
    |||||||||| ||||||||| ||||||| | ||||||||||||||    
T  15716266 aggagtaccggtacacctcattttgtgagtgtaccgtagaagttc 15716310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 200
Target Start/End: Original strand, 15954610 - 15954666
Alignment:
Q  144 aattataaagcaggagtaccgatacacctcactttgtgaatctaccgtagaagttcc 200  Q
    |||||| ||| | |||||||| ||||||||| ||||||| | |||||||||||||||    
T  15954610 aattatgaagaaagagtaccggtacacctcattttgtgagtgtaccgtagaagttcc 15954666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 138
Target Start/End: Complemental strand, 28240712 - 28240665
Alignment:
Q  90 aaaccggaactcgtctaaattacagggggttaaatacatattaaccctt 138  Q
    ||||||||||||| | ||||||||||||| |||| ||||||||||||||    
T  28240712 aaaccggaactcgcccaaattacaggggg-taaagacatattaaccctt 28240665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 200
Target Start/End: Complemental strand, 35291383 - 35291327
Alignment:
Q  144 aattataaagcaggagtaccgatacacctcactttgtgaatctaccgtagaagttcc 200  Q
    |||||| ||| | |||||||| ||||||||| ||||||| | |||||||||||||||    
T  35291383 aattatgaagaaagagtaccggtacacctcattttgtgagtgtaccgtagaagttcc 35291327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 16 - 137
Target Start/End: Original strand, 26167162 - 26167281
Alignment:
Q  16 cataggtcagaggctaatatcaaagaatcttattttacagggttggaatttaaacnnnnnnnnnacaggggagtaaaccggaactcgtctaaattacagg 115  Q
    |||||||||| |||||| |||||||||| |||||||||||||||||||| |||||         ||||||| ||||||||||| ||| ||||||||||||    
T  26167162 cataggtcaggggctaaaatcaaagaattttattttacagggttggaatctaaactttttttttacagggg-gtaaaccggaattcgcctaaattacagg 26167260  T
Q  116 gggttaaatacatattaaccct 137  Q
    ||| |||| |||||||||||||    
T  26167261 ggg-taaagacatattaaccct 26167281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 20 - 148
Target Start/End: Complemental strand, 28038900 - 28038774
Alignment:
Q  20 ggtcagaggctaatatcaaagaatcttattttacagggttggaatttaaacnnnnnnnnnacaggggagtaaaccggaactcgtctaaattacagggggt 119  Q
    |||||| |||||| ||||||||||||||||||||||||||||||| |||||         ||||||  | |||||| |||||| | ||||||||||||      
T  28038900 ggtcaggggctaaaatcaaagaatcttattttacagggttggaatctaaactttttttttacagggaggaaaaccgaaactcgcccaaattacagggg-- 28038803  T
Q  120 taaatacatattaacccttaatacaatta 148  Q
    |||| ||||||||||||||||| ||||||    
T  28038802 taaagacatattaacccttaattcaatta 28038774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 16 - 135
Target Start/End: Original strand, 23495680 - 23495797
Alignment:
Q  16 cataggtcagaggctaatatcaaagaatcttattttacagggttggaatttaaacnnnnnnnnnacaggggagtaaaccggaactcgtctaaattacagg 115  Q
    |||||||||| ||||||  ||||| |||||||||||||||||||||||| ||| |         ||||||| |||||||| |||||| ||||||||||||    
T  23495680 cataggtcaggggctaaagtcaaataatcttattttacagggttggaatctaatctttttttttacagggg-gtaaaccgaaactcgcctaaattacagg 23495778  T
Q  116 gggttaaatacatattaacc 135  Q
    ||| ||||||||||||||||    
T  23495779 ggg-taaatacatattaacc 23495797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 144 - 200
Target Start/End: Complemental strand, 1129186 - 1129130
Alignment:
Q  144 aattataaagcaggagtaccgatacacctcactttgtgaatctaccgtagaagttcc 200  Q
    |||||| |||||||||||||| ||||||||||||||||| | |||||||||||||||    
T  1129186 aattatgaagcaggagtaccggtacacctcactttgtgagtgtaccgtagaagttcc 1129130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 144 - 200
Target Start/End: Original strand, 40478107 - 40478163
Alignment:
Q  144 aattataaagcaggagtaccgatacacctcactttgtgaatctaccgtagaagttcc 200  Q
    |||||| |||||||||||||| ||||||||||||||||| | |||||||||||||||    
T  40478107 aattatgaagcaggagtaccggtacacctcactttgtgagtgtaccgtagaagttcc 40478163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 144 - 200
Target Start/End: Complemental strand, 44379471 - 44379415
Alignment:
Q  144 aattataaagcaggagtaccgatacacctcactttgtgaatctaccgtagaagttcc 200  Q
    |||||| |||||||||||||| ||||||||||||||||| | |||||||||||||||    
T  44379471 aattatgaagcaggagtaccggtacacctcactttgtgagtgtaccgtagaagttcc 44379415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 144 - 199
Target Start/End: Original strand, 41982334 - 41982389
Alignment:
Q  144 aattataaagcaggagtaccgatacacctcactttgtgaatctaccgtagaagttc 199  Q
    |||||||||| | |||||||||||||||||||||||||| | ||||||||||||||    
T  41982334 aattataaagtaagagtaccgatacacctcactttgtgagtgtaccgtagaagttc 41982389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 144 - 198
Target Start/End: Original strand, 7862794 - 7862848
Alignment:
Q  144 aattataaagcaggagtaccgatacacctcactttgtgaatctaccgtagaagtt 198  Q
    |||||| |||||||||||||| ||||||||||||||||||| |||| ||||||||    
T  7862794 aattatgaagcaggagtaccggtacacctcactttgtgaatgtaccatagaagtt 7862848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 136
Target Start/End: Original strand, 24171728 - 24171845
Alignment:
Q  20 ggtcagaggctaatatcaaagaatcttattttacagggttggaatttaaac-nnnnnnnnnacaggggagtaaaccggaactcgtctaaattacaggggg 118  Q
    |||||| |||||| | ||||||||||||||||||||||||||||| |||||          ||||||| | ||||| ||||||| | |||||||||||||    
T  24171728 ggtcaggggctaaaaccaaagaatcttattttacagggttggaatctaaacttttttttttacaggggggaaaaccagaactcgcccaaattacaggggg 24171827  T
Q  119 ttaaatacatattaaccc 136  Q
     |||| ||||||||||||    
T  24171828 gtaaaaacatattaaccc 24171845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 70
Target Start/End: Original strand, 29860682 - 29860736
Alignment:
Q  16 cataggtcagaggctaatatcaaagaatcttattttacagggttggaatttaaac 70  Q
    ||||||||||||| ||| ||||||||||||||||||||||| ||||||| |||||    
T  29860682 cataggtcagaggttaaaatcaaagaatcttattttacaggattggaatctaaac 29860736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 28 - 138
Target Start/End: Complemental strand, 38601445 - 38601335
Alignment:
Q  28 gctaatatcaaagaatcttattttacagggttggaatttaaacnnnnnnnnn-acaggggagtaaaccggaactcgtctaaattacagggggttaaatac 126  Q
    ||||| ||||||| ||||||||||||||||||||||| |||||          ||||||| ||||||||||||||||| |||||| |||||  |||| ||    
T  38601445 gctaaaatcaaaggatcttattttacagggttggaatctaaacttttatttttacagggg-gtaaaccggaactcgtcgaaattataggggtgtaaagac 38601347  T
Q  127 atattaaccctt 138  Q
    ||||||||||||    
T  38601346 atattaaccctt 38601335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 137
Target Start/End: Complemental strand, 5117838 - 5117788
Alignment:
Q  86 gagtaaaccggaactcgtctaaattacagggggttaaatacatattaaccct 137  Q
    ||||||||||||||||| ||||||||||||||| |||| |||||||||||||    
T  5117838 gagtaaaccggaactcgcctaaattacaggggg-taaagacatattaaccct 5117788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 195
Target Start/End: Original strand, 24170280 - 24170331
Alignment:
Q  144 aattataaagcaggagtaccgatacacctcactttgtgaatctaccgtagaa 195  Q
    |||||| ||||||||||| ||||| |||||||||||||||| ||||||||||    
T  24170280 aattatgaagcaggagtatcgatatacctcactttgtgaatgtaccgtagaa 24170331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 80 - 135
Target Start/End: Complemental strand, 24170654 - 24170599
Alignment:
Q  80 acaggggagtaaaccggaactcgtctaaattacagggggttaaatacatattaacc 135  Q
    ||||||| ||||||||||||||| | ||||||||||||| |||| |||||||||||    
T  24170654 acaggggggtaaaccggaactcgcccaaattacaggggggtaaaaacatattaacc 24170599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 199
Target Start/End: Complemental strand, 43745403 - 43745348
Alignment:
Q  144 aattataaagcaggagtaccgatacacctcactttgtgaatctaccgtagaagttc 199  Q
    |||||| |||||| ||||||| ||||||||||||||| ||| ||||||||||||||    
T  43745403 aattatgaagcagaagtaccggtacacctcactttgtaaatgtaccgtagaagttc 43745348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 144 - 198
Target Start/End: Original strand, 23456807 - 23456861
Alignment:
Q  144 aattataaagcaggagtaccgatacacctcactttgtgaatctaccgtagaagtt 198  Q
    |||||| ||| |||||||||| ||||||||||||||||| | |||||||||||||    
T  23456807 aattatgaagaaggagtaccggtacacctcactttgtgagtgtaccgtagaagtt 23456861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 200
Target Start/End: Original strand, 1021330 - 1021379
Alignment:
Q  151 aagcaggagtaccgatacacctcactttgtgaatctaccgtagaagttcc 200  Q
    |||||||||||||||||||||||| ||||||| | || ||||||||||||    
T  1021330 aagcaggagtaccgatacacctcattttgtgagtgtatcgtagaagttcc 1021379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 137
Target Start/End: Original strand, 5118760 - 5118859
Alignment:
Q  37 aaagaatcttattttacagggttggaatttaaacnnnnnnnnnacaggggagtaaaccggaactcgtctaaattacagggggttaaatacatattaaccc 136  Q
    |||||||||||  ||||||||||||||| |||||         ||||||| ||||||||||||||  |||||||||||| || |||| ||||||||||||    
T  5118760 aaagaatcttaaattacagggttggaatctaaactttttttttacagggg-gtaaaccggaactcacctaaattacaggagggtaaaaacatattaaccc 5118858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 201
Target Start/End: Original strand, 40474184 - 40474241
Alignment:
Q  144 aattataaagcaggagtaccgatacacctcactttgtgaatctaccgtagaagttcct 201  Q
    |||||| |||||||||||||| ||||||||||||| ||| | |||| |||||||||||    
T  40474184 aattatgaagcaggagtaccggtacacctcactttatgagtgtaccatagaagttcct 40474241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 200
Target Start/End: Complemental strand, 53289280 - 53289231
Alignment:
Q  151 aagcaggagtaccgatacacctcactttgtgaatctaccgtagaagttcc 200  Q
    |||||||||||||| ||||||||| ||||||| | |||||||||||||||    
T  53289280 aagcaggagtaccggtacacctcattttgtgagtgtaccgtagaagttcc 53289231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 200
Target Start/End: Original strand, 25834579 - 25834635
Alignment:
Q  144 aattataaagcaggagtaccgatacacctcactttgtgaatctaccgtagaagttcc 200  Q
    |||||| |||||||||||||| |||| |||||||| ||| | |||||||||||||||    
T  25834579 aattatgaagcaggagtaccggtacatctcactttatgagtgtaccgtagaagttcc 25834635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 200
Target Start/End: Original strand, 39678456 - 39678511
Alignment:
Q  144 aattataaagcaggagtaccgatacacctcactttgtgaatctaccgtagaagttcc 200  Q
    ||||||||||||| |||||||||||||||||| |||||||| || | ||||||||||    
T  39678456 aattataaagcagaagtaccgatacacctcac-ttgtgaatatatcttagaagttcc 39678511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 200
Target Start/End: Original strand, 51344721 - 51344777
Alignment:
Q  144 aattataaagcaggagtaccgatacacctcactttgtgaatctaccgtagaagttcc 200  Q
    |||||| |||||||||||||| ||||||| ||||||| | | |||||||||||||||    
T  51344721 aattatgaagcaggagtaccggtacaccttactttgtaagtgtaccgtagaagttcc 51344777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 192
Target Start/End: Original strand, 54788664 - 54788712
Alignment:
Q  144 aattataaagcaggagtaccgatacacctcactttgtgaatctaccgta 192  Q
    ||||||||||||||||||| | ||||||||||||||||| | |||||||    
T  54788664 aattataaagcaggagtactggtacacctcactttgtgagtgtaccgta 54788712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 119
Target Start/End: Complemental strand, 49116446 - 49116407
Alignment:
Q  80 acaggggagtaaaccggaactcgtctaaattacagggggt 119  Q
    ||||||| ||||||||||||||| ||||||||||||||||    
T  49116446 acaggggtgtaaaccggaactcgcctaaattacagggggt 49116407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 200
Target Start/End: Complemental strand, 32121950 - 32121900
Alignment:
Q  151 aagcaggagtaccgatacacctcactttgtga-atctaccgtagaagttcc 200  Q
    |||||||||||||| |||||||||||||||||  | |||||||||||||||    
T  32121950 aagcaggagtaccggtacacctcactttgtgaggtgtaccgtagaagttcc 32121900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 199
Target Start/End: Complemental strand, 46507405 - 46507363
Alignment:
Q  157 gagtaccgatacacctcactttgtgaatctaccgtagaagttc 199  Q
    |||||||||||||||||| ||||||| | ||||||||||||||    
T  46507405 gagtaccgatacacctcattttgtgagtgtaccgtagaagttc 46507363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 151 - 200
Target Start/End: Original strand, 30349360 - 30349409
Alignment:
Q  151 aagcaggagtaccgatacacctcactttgtgaatctaccgtagaagttcc 200  Q
    |||||| ||||||||||||| ||| ||||||| | |||||||||||||||    
T  30349360 aagcagaagtaccgatacacttcattttgtgagtgtaccgtagaagttcc 30349409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 151 - 200
Target Start/End: Original strand, 35501146 - 35501195
Alignment:
Q  151 aagcaggagtaccgatacacctcactttgtgaatctaccgtagaagttcc 200  Q
    |||||||||||||| ||||||||| ||||||| | |||| ||||||||||    
T  35501146 aagcaggagtaccggtacacctcattttgtgagtgtaccatagaagttcc 35501195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 138
Target Start/End: Original strand, 28039991 - 28040038
Alignment:
Q  90 aaaccggaactcgtctaaattacagggggttaaatacatattaaccctt 138  Q
    ||||||||||||| | ||||||||||||| |||| ||||||||||||||    
T  28039991 aaaccggaactcgcccaaattacaggggg-taaagacatattaaccctt 28040038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 200
Target Start/End: Complemental strand, 29698375 - 29698323
Alignment:
Q  149 taaagcaggagtaccgatacacctcactttgtga-atctaccgtagaagttcc 200  Q
    |||||||||||||||| ||||||||| |||||||  | |||||||||||||||    
T  29698375 taaagcaggagtaccggtacacctcaatttgtgaggtgtaccgtagaagttcc 29698323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 200
Target Start/End: Original strand, 36220755 - 36220811
Alignment:
Q  144 aattataaagcaggagtaccgatacacctcactttgtgaatctaccgtagaagttcc 200  Q
    |||||| |||||  |||| || ||||||||||||||||| | |||||||||||||||    
T  36220755 aattatgaagcaaaagtatcggtacacctcactttgtgagtgtaccgtagaagttcc 36220811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 200
Target Start/End: Complemental strand, 37520759 - 37520703
Alignment:
Q  144 aattataaagcaggagtaccgatacacctcactttgtgaatctaccgtagaagttcc 200  Q
    |||||| ||| | |||||||| ||||||||| ||||||| | |||||||||||||||    
T  37520759 aattatgaagaaagagtaccggtacacctcattttgtgagtgtaccgtagaagttcc 37520703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 200
Target Start/End: Original strand, 42479034 - 42479090
Alignment:
Q  144 aattataaagcaggagtaccgatacacctcactttgtgaatctaccgtagaagttcc 200  Q
    |||||| || || |||||||| ||||||| | ||||||||| |||||||||||||||    
T  42479034 aattatgaaacaagagtaccggtacaccttattttgtgaatgtaccgtagaagttcc 42479090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 200
Target Start/End: Complemental strand, 42621905 - 42621849
Alignment:
Q  144 aattataaagcaggagtaccgatacacctcactttgtgaatctaccgtagaagttcc 200  Q
    |||||| ||||| |||||| | ||||||||| ||||||| | |||||||||||||||    
T  42621905 aattatgaagcaagagtactggtacacctcattttgtgagtgtaccgtagaagttcc 42621849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 49)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 16 - 136
Target Start/End: Original strand, 27904215 - 27904335
Alignment:
Q  16 cataggtcagaggctaatatcaaagaatcttattttacagggttggaatttaaac-nnnnnnnnnacaggggagtaaaccggaactcgtctaaattacag 114  Q
    |||||||||| |||||| ||||||||||||||||||| |||||||||||||||||          ||||||| ||||| ||||||||  |||||||||||    
T  27904215 cataggtcaggggctaaaatcaaagaatcttattttatagggttggaatttaaacttttttttttacagggg-gtaaatcggaactcacctaaattacag 27904313  T
Q  115 ggggttaaatacatattaaccc 136  Q
    |||| |||||||||||||||||    
T  27904314 gggggtaaatacatattaaccc 27904335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 16 - 138
Target Start/End: Original strand, 48643276 - 48643398
Alignment:
Q  16 cataggtcagaggctaatatcaaagaatcttattttacagggttggaatttaaac--nnnnnnnnnacaggggagtaaaccggaactcgtctaaattaca 113  Q
    |||| ||||| |||||| ||||||||||||||||||||||||||||||| |||||           ||||||| ||||||||||||||| ||||||||||    
T  48643276 cataagtcaggggctaaaatcaaagaatcttattttacagggttggaatctaaactttttttttttacagggg-gtaaaccggaactcgcctaaattaca 48643374  T
Q  114 gggggttaaatacatattaaccctt 138  Q
    ||||| |||||||||||||||||||    
T  48643375 ggggg-taaatacatattaaccctt 48643398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 16 - 138
Target Start/End: Complemental strand, 50961475 - 50961354
Alignment:
Q  16 cataggtcagaggctaatatcaaagaatcttattttacagggttggaatttaaac-nnnnnnnnnacaggggagtaaaccggaactcgtctaaattacag 114  Q
    |||||||||| |||||| || |||||||||||||||||||||||||||| |||||          ||||||| ||||||||||||||  |||||||||||    
T  50961475 cataggtcaggggctaaaattaaagaatcttattttacagggttggaatctaaacttttttttttacagggg-gtaaaccggaactcccctaaattacag 50961377  T
Q  115 ggggttaaatacatattaaccctt 138  Q
    |||| |||||||||||||||||||    
T  50961376 gggg-taaatacatattaaccctt 50961354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 20 - 136
Target Start/End: Original strand, 49763642 - 49763759
Alignment:
Q  20 ggtcagaggctaatatcaaagaatcttattttacagggttggaatttaaac-nnnnnnnnnacaggggagtaaaccggaactcgtctaaattacaggggg 118  Q
    |||||| |||||| ||||||||||||||||||||||||||||||| |||||          ||||||| | ||||||||||||| | |||||||||||||    
T  49763642 ggtcaggggctaaaatcaaagaatcttattttacagggttggaatctaaacttttttttttacaggggggaaaaccggaactcgcccaaattacaggggg 49763741  T
Q  119 ttaaatacatattaaccc 136  Q
     |||| ||||||||||||    
T  49763742 gtaaagacatattaaccc 49763759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 20 - 137
Target Start/End: Original strand, 16830994 - 16831112
Alignment:
Q  20 ggtcagaggctaatatcaaagaatcttattttacagggttggaatttaaac-nnnnnnnnnacaggggagtaaaccggaactcgtctaaattacaggggg 118  Q
    |||||| |||||| ||||||||||||||||||||||||||||||| |||||          ||||||| | ||||||||||||| | |||||||| ||||    
T  16830994 ggtcaggggctaaaatcaaagaatcttattttacagggttggaatctaaacttttttttttacaggggggaaaaccggaactcgcccaaattacaagggg 16831093  T
Q  119 ttaaatacatattaaccct 137  Q
     |||| |||||||||||||    
T  16831094 gtaaagacatattaaccct 16831112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 20 - 137
Target Start/End: Original strand, 20160360 - 20160478
Alignment:
Q  20 ggtcagaggctaatatcaaagaatcttattttacagggttggaatttaaac-nnnnnnnnnacaggggagtaaaccggaactcgtctaaattacaggggg 118  Q
    |||||| |||||| ||||||||||||||||||||| ||||||||| |||||          ||||||| | ||||||||||||| | |||||||||||||    
T  20160360 ggtcaggggctaaaatcaaagaatcttattttacaaggttggaatctaaacttttttttttacaggggggaaaaccggaactcgcccaaattacaggggg 20160459  T
Q  119 ttaaatacatattaaccct 137  Q
     |||| |||||||||||||    
T  20160460 gtaaagacatattaaccct 20160478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 36631088 - 36631034
Alignment:
Q  16 cataggtcagaggctaatatcaaagaatcttattttacagggttggaatttaaac 70  Q
    |||||||||| |||||| ||||||||||||||||||||||||||||||| |||||    
T  36631088 cataggtcaggggctaaaatcaaagaatcttattttacagggttggaatctaaac 36631034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 10375400 - 10375453
Alignment:
Q  16 cataggtcagaggctaatatcaaagaatcttattttacagggttggaatttaaa 69  Q
    |||||||||| |||||| ||||||||||||||||||||||||||||||| ||||    
T  10375400 cataggtcaggggctaaaatcaaagaatcttattttacagggttggaatctaaa 10375453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 144 - 200
Target Start/End: Complemental strand, 48976932 - 48976876
Alignment:
Q  144 aattataaagcaggagtaccgatacacctcactttgtgaatctaccgtagaagttcc 200  Q
    |||||| |||||||||||||||||||||||||||||||| | | |||||||||||||    
T  48976932 aattatgaagcaggagtaccgatacacctcactttgtgagtgtgccgtagaagttcc 48976876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 144 - 199
Target Start/End: Complemental strand, 34038218 - 34038163
Alignment:
Q  144 aattataaagcaggagtaccgatacacctcactttgtgaatctaccgtagaagttc 199  Q
    |||||| |||||||||||||| ||||||||||||||||| | ||||||||||||||    
T  34038218 aattatgaagcaggagtaccggtacacctcactttgtgagtgtaccgtagaagttc 34038163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 20 - 137
Target Start/End: Complemental strand, 46624721 - 46624603
Alignment:
Q  20 ggtcagaggctaatatcaaagaatcttattttacagggttggaatttaaac-nnnnnnnnnacaggggagtaaaccggaactcgtctaaattacaggggg 118  Q
    |||||| |||||| ||||||||||||||||||||||||||||||| |||||          | ||||| | |||||| |||||| | |||||||||||||    
T  46624721 ggtcaggggctaaaatcaaagaatcttattttacagggttggaatctaaacttttttttttataggggggaaaaccgaaactcgcccaaattacaggggg 46624622  T
Q  119 ttaaatacatattaaccct 137  Q
     |||| |||||||||||||    
T  46624621 gtaaagacatattaaccct 46624603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 144 - 200
Target Start/End: Original strand, 10408644 - 10408700
Alignment:
Q  144 aattataaagcaggagtaccgatacacctcactttgtgaatctaccgtagaagttcc 200  Q
    |||||| |||||| ||||||| ||||||||||||||||| | |||||||||||||||    
T  10408644 aattatgaagcagaagtaccggtacacctcactttgtgagtgtaccgtagaagttcc 10408700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 69
Target Start/End: Complemental strand, 22058814 - 22058766
Alignment:
Q  21 gtcagaggctaatatcaaagaatcttattttacagggttggaatttaaa 69  Q
    ||||| |||||| ||||||||||||||||||||||||||||||| ||||    
T  22058814 gtcaggggctaaaatcaaagaatcttattttacagggttggaatctaaa 22058766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 144 - 200
Target Start/End: Complemental strand, 24230626 - 24230570
Alignment:
Q  144 aattataaagcaggagtaccgatacacctcactttgtgaatctaccgtagaagttcc 200  Q
    |||||| |||||||||||||  ||||||||||||||||| | |||||||||||||||    
T  24230626 aattatgaagcaggagtaccattacacctcactttgtgagtgtaccgtagaagttcc 24230570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 144 - 200
Target Start/End: Original strand, 38261152 - 38261208
Alignment:
Q  144 aattataaagcaggagtaccgatacacctcactttgtgaatctaccgtagaagttcc 200  Q
    |||||| |||||||||||||| ||||||||||||| ||| | |||||||||||||||    
T  38261152 aattatgaagcaggagtaccggtacacctcactttatgagtgtaccgtagaagttcc 38261208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 88 - 139
Target Start/End: Original strand, 17865686 - 17865737
Alignment:
Q  88 gtaaaccggaactcgtctaaattacagggggttaaatacatattaaccctta 139  Q
    ||||||||||||||| | ||||||||||||  ||||||||||||||||||||    
T  17865686 gtaaaccggaactcgcccaaattacaggggagtaaatacatattaaccctta 17865737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 70
Target Start/End: Complemental strand, 27361494 - 27361451
Alignment:
Q  27 ggctaatatcaaagaatcttattttacagggttggaatttaaac 70  Q
    |||||| ||||||||||||||||||||||||||||||| |||||    
T  27361494 ggctaaaatcaaagaatcttattttacagggttggaatctaaac 27361451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 199
Target Start/End: Original strand, 52180582 - 52180637
Alignment:
Q  144 aattataaagcaggagtaccgatacacctcactttgtgaatctaccgtagaagttc 199  Q
    |||||| |||||||||||||| ||||||||||||||||| | |||| |||||||||    
T  52180582 aattatgaagcaggagtaccggtacacctcactttgtgagtataccatagaagttc 52180637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 7377471 - 7377421
Alignment:
Q  20 ggtcagaggctaatatcaaagaatcttattttacagggttggaatttaaac 70  Q
    |||||| |||||| ||||||||||||||||||| ||||||||||| |||||    
T  7377471 ggtcaggggctaaaatcaaagaatcttattttatagggttggaatctaaac 7377421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 144 - 198
Target Start/End: Original strand, 51056545 - 51056599
Alignment:
Q  144 aattataaagcaggagtaccgatacacctcactttgtgaatctaccgtagaagtt 198  Q
    |||||| |||||||||||||| |||| |||||||||||| | |||||||||||||    
T  51056545 aattatgaagcaggagtaccggtacatctcactttgtgattgtaccgtagaagtt 51056599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 88 - 137
Target Start/End: Original strand, 7378447 - 7378496
Alignment:
Q  88 gtaaaccggaactcgtctaaattacagggggttaaatacatattaaccct 137  Q
    ||||||| ||||||||| |||||| |||||| ||||||||||||||||||    
T  7378447 gtaaaccagaactcgtccaaattagaggggggtaaatacatattaaccct 7378496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 90 - 139
Target Start/End: Complemental strand, 20159268 - 20159219
Alignment:
Q  90 aaaccggaactcgtctaaattacagggggttaaatacatattaaccctta 139  Q
    ||||||||||||| | ||||||||||||| |||| |||||||||||||||    
T  20159268 aaaccggaactcgcccaaattacaggggggtaaagacatattaaccctta 20159219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 137
Target Start/End: Complemental strand, 27903009 - 27902952
Alignment:
Q  80 acaggggagtaaaccggaactcgtctaaattacagggggttaaatacatattaaccct 137  Q
    ||||||| ||||||||||||||| | |||||| |||||| |||| |||||||||||||    
T  27903009 acaggggggtaaaccggaactcgcccaaattaaaggggggtaaagacatattaaccct 27902952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 200
Target Start/End: Complemental strand, 31821621 - 31821572
Alignment:
Q  151 aagcaggagtaccgatacacctcactttgtgaatctaccgtagaagttcc 200  Q
    |||||||||||||| ||||||||| ||||||| | |||||||||||||||    
T  31821621 aagcaggagtaccgctacacctcattttgtgagtgtaccgtagaagttcc 31821572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 140
Target Start/End: Original strand, 6668316 - 6668368
Alignment:
Q  88 gtaaaccggaactcgtctaaattacagggggttaaatacatattaacccttaa 140  Q
    ||||||||||||||| | |||||||||| || |||| ||||||||||||||||    
T  6668316 gtaaaccggaactcgcccaaattacaggtggctaaagacatattaacccttaa 6668368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 200
Target Start/End: Original strand, 9587993 - 9588049
Alignment:
Q  144 aattataaagcaggagtaccgatacacctcactttgtgaatctaccgtagaagttcc 200  Q
    |||||| |||||||||||||| || |||||||||| ||| | |||||||||||||||    
T  9587993 aattatgaagcaggagtaccggtatacctcactttatgagtgtaccgtagaagttcc 9588049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 200
Target Start/End: Complemental strand, 12105217 - 12105161
Alignment:
Q  144 aattataaagcaggagtaccgatacacctcactttgtgaatctaccgtagaagttcc 200  Q
    |||||| ||||| |||||||| ||||||||| ||||||| | |||||||||||||||    
T  12105217 aattatgaagcaagagtaccggtacacctcattttgtgagtgtaccgtagaagttcc 12105161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 136
Target Start/End: Original strand, 27362151 - 27362207
Alignment:
Q  80 acaggggagtaaaccggaactcgtctaaattacagggggttaaatacatattaaccc 136  Q
    ||||||| | ||||||||||||| | ||||||||||||| |||| ||||||||||||    
T  27362151 acaggggggaaaaccggaactcgcccaaattacaggggggtaaagacatattaaccc 27362207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 200
Target Start/End: Complemental strand, 35873993 - 35873937
Alignment:
Q  144 aattataaagcaggagtaccgatacacctcactttgtgaatctaccgtagaagttcc 200  Q
    |||||| |||||| ||||||| |||| |||||||||||| | |||||||||||||||    
T  35873993 aattatgaagcagaagtaccggtacatctcactttgtgagtgtaccgtagaagttcc 35873937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 200
Target Start/End: Original strand, 44264006 - 44264062
Alignment:
Q  144 aattataaagcaggagtaccgatacacctcactttgtgaatctaccgtagaagttcc 200  Q
    |||||| || ||||||||||| ||||||||||||||||| | ||||||||| |||||    
T  44264006 aattatgaaacaggagtaccggtacacctcactttgtgagtgtaccgtagatgttcc 44264062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 138
Target Start/End: Complemental strand, 45459265 - 45459210
Alignment:
Q  82 aggggagtaaaccggaactcgtctaaattacagggggttaaatacatattaaccctt 138  Q
    ||||| |||||||||||||||||  |||||||||||| |||| ||||||||||||||    
T  45459265 aggggtgtaaaccggaactcgtcccaattacaggggg-taaagacatattaaccctt 45459210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 200
Target Start/End: Complemental strand, 52345656 - 52345600
Alignment:
Q  144 aattataaagcaggagtaccgatacacctcactttgtgaatctaccgtagaagttcc 200  Q
    |||||| || || |||||||| ||||||||||||||||| | |||||||||||||||    
T  52345656 aattatgaaacaagagtaccggtacacctcactttgtgagtgtaccgtagaagttcc 52345600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 198
Target Start/End: Original strand, 38718092 - 38718135
Alignment:
Q  155 aggagtaccgatacacctcactttgtgaatctaccgtagaagtt 198  Q
    |||||||||||||||||||| ||||||| | |||||||||||||    
T  38718092 aggagtaccgatacacctcattttgtgagtgtaccgtagaagtt 38718135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 200
Target Start/End: Complemental strand, 2249634 - 2249588
Alignment:
Q  154 caggagtaccgatacacctcactttgtgaatctaccgtagaagttcc 200  Q
    ||||||||||||||||||||| ||||||| | ||||| |||||||||    
T  2249634 caggagtaccgatacacctcattttgtgagtgtaccgcagaagttcc 2249588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 138
Target Start/End: Complemental strand, 21796171 - 21796113
Alignment:
Q  80 acaggggagtaaaccggaactcgtctaaattacagggggttaaatacatattaaccctt 138  Q
    ||||||| ||||||||||| ||| | |||||||||| || |||| ||||||||||||||    
T  21796171 acaggggggtaaaccggaattcgcccaaattacaggagggtaaagacatattaaccctt 21796113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 136
Target Start/End: Original strand, 21813848 - 21813894
Alignment:
Q  90 aaaccggaactcgtctaaattacagggggttaaatacatattaaccc 136  Q
    ||||||||||||| | ||||||||||||| |||| ||||||||||||    
T  21813848 aaaccggaactcgcccaaattacaggggggtaaagacatattaaccc 21813894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 137
Target Start/End: Original strand, 38132670 - 38132723
Alignment:
Q  83 ggggagtaaaccggaactcgtctaaattacagggggttaaatacatattaaccct 137  Q
    ||||| |||||||||||||| | ||||||||||||| |||| |||||||||||||    
T  38132670 ggggaataaaccggaactcgcccaaattacaggggg-taaagacatattaaccct 38132723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 138
Target Start/End: Original strand, 46625793 - 46625851
Alignment:
Q  80 acaggggagtaaaccggaactcgtctaaattacagggggttaaatacatattaaccctt 138  Q
    ||||||| | ||| ||||||||| | ||||||||||||| |||| ||||||||||||||    
T  46625793 acaggggggaaaatcggaactcgcccaaattacaggggggtaaagacatattaaccctt 46625851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 201
Target Start/End: Original strand, 47544653 - 47544703
Alignment:
Q  151 aagcaggagtaccgatacacctcactttgtgaatctaccgtagaagttcct 201  Q
    |||||||||||||| ||||||||| ||||||| | |||| |||||||||||    
T  47544653 aagcaggagtaccggtacacctcattttgtgagtgtaccatagaagttcct 47544703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 200
Target Start/End: Complemental strand, 51610591 - 51610537
Alignment:
Q  146 ttataaagcaggagtaccgatacacctcactttgtgaatctaccgtagaagttcc 200  Q
    |||| ||||| |||||||||||||||||| |||  |||| |||||||||||||||    
T  51610591 ttatgaagcaagagtaccgatacacctcaatttacgaatgtaccgtagaagttcc 51610537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 151 - 200
Target Start/End: Original strand, 8396705 - 8396754
Alignment:
Q  151 aagcaggagtaccgatacacctcactttgtgaatctaccgtagaagttcc 200  Q
    |||||||||||||||||||||||| ||| ||| | |||||||||| ||||    
T  8396705 aagcaggagtaccgatacacctcattttatgagtgtaccgtagaaattcc 8396754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 84 - 139
Target Start/End: Original strand, 36632264 - 36632316
Alignment:
Q  84 gggagtaaaccggaactcgtctaaattacagggggttaaatacatattaaccctta 139  Q
    ||||||||||||||||||| | |||||||||||   |||| |||||||||||||||    
T  36632264 gggagtaaaccggaactcgcccaaattacaggg---taaagacatattaaccctta 36632316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 159 - 200
Target Start/End: Complemental strand, 46362065 - 46362024
Alignment:
Q  159 gtaccgatacacctcactttgtgaatctaccgtagaagttcc 200  Q
    |||||| ||||||||| ||||||||| |||||||||||||||    
T  46362065 gtaccggtacacctcattttgtgaatgtaccgtagaagttcc 46362024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 151 - 200
Target Start/End: Original strand, 46641873 - 46641922
Alignment:
Q  151 aagcaggagtaccgatacacctcactttgtgaatctaccgtagaagttcc 200  Q
    |||||||||||||| ||||||||| |||| || | |||||||||||||||    
T  46641873 aagcaggagtaccggtacacctcattttgcgagtgtaccgtagaagttcc 46641922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 139
Target Start/End: Complemental strand, 10374186 - 10374131
Alignment:
Q  83 ggggagtaaaccggaactcgtctaaattacagggggttaaatacatattaaccctta 139  Q
    |||| ||||||| ||||||| | |||||||||||| ||||| |||||||||||||||    
T  10374186 ggggggtaaaccagaactcgcccaaattacagggg-ttaaagacatattaaccctta 10374131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 136
Target Start/End: Complemental strand, 16829910 - 16829854
Alignment:
Q  80 acaggggagtaaaccggaactcgtctaaattacagggggttaaatacatattaaccc 136  Q
    ||||||| | ||||||||||||| | ||||||||||| | |||| ||||||||||||    
T  16829910 acaggggggaaaaccggaactcgcccaaattacagggaggtaaagacatattaaccc 16829854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 200
Target Start/End: Complemental strand, 25702492 - 25702436
Alignment:
Q  144 aattataaagcaggagtaccgatacacctcactttgtgaatctaccgtagaagttcc 200  Q
    |||||| ||||| |||||||| ||||||||| ||| ||| | |||||||||||||||    
T  25702492 aattatgaagcaagagtaccggtacacctcaatttatgagtgtaccgtagaagttcc 25702436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 200
Target Start/End: Original strand, 28624827 - 28624883
Alignment:
Q  144 aattataaagcaggagtaccgatacacctcactttgtgaatctaccgtagaagttcc 200  Q
    |||||||||| | |||||| | ||||||||||||||| | | |||||||||||||||    
T  28624827 aattataaaggaagagtacgggtacacctcactttgtaagtgtaccgtagaagttcc 28624883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #49
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 137
Target Start/End: Complemental strand, 36631021 - 36630982
Alignment:
Q  97 aactcgtctaaattacagggggttaaatacatattaaccct 137  Q
    |||||| |||||||||||||||| |||||||||||||||||    
T  36631021 aactcggctaaattacagggggt-aaatacatattaaccct 36630982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 3e-19; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 27 - 137
Target Start/End: Complemental strand, 44057251 - 44057140
Alignment:
Q  27 ggctaatatcaaagaatcttattttacagggttggaatttaaacnnnnnnnnn-acaggggagtaaaccggaactcgtctaaattacagggggttaaata 125  Q
    |||||| ||||||||||||||||||||||||||||||| |||||          ||||||| | ||||||||||||| | ||||||||||||| ||||||    
T  44057251 ggctaaaatcaaagaatcttattttacagggttggaatctaaacttttttttttacaggggggaaaaccggaactcgcccaaattacaggggggtaaata 44057152  T
Q  126 catattaaccct 137  Q
    ||||||||||||    
T  44057151 catattaaccct 44057140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 20 - 137
Target Start/End: Original strand, 38983221 - 38983339
Alignment:
Q  20 ggtcagaggctaatatcaaagaatcttattttacagggttggaatttaaac-nnnnnnnnnacaggggagtaaaccggaactcgtctaaattacaggggg 118  Q
    |||||| |||||| ||||||||||||||||||||||||||||||| |||||          ||||||| | ||||||||||||| | |||||||||||||    
T  38983221 ggtcaggggctaaaatcaaagaatcttattttacagggttggaatctaaacttttttttttacaggggggaaaaccggaactcgcccaaattacaggggg 38983320  T
Q  119 ttaaatacatattaaccct 137  Q
     |||| |||||||||||||    
T  38983321 gtaaagacatattaaccct 38983339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 20 - 137
Target Start/End: Original strand, 39014318 - 39014436
Alignment:
Q  20 ggtcagaggctaatatcaaagaatcttattttacagggttggaatttaaac-nnnnnnnnnacaggggagtaaaccggaactcgtctaaattacaggggg 118  Q
    |||||| |||||| ||||||||||||||||||||||||||||||| |||||          ||||||| | ||||||||||||| | |||||||||||||    
T  39014318 ggtcaggggctaaaatcaaagaatcttattttacagggttggaatctaaacttttttttttacaggggggaaaaccggaactcgcccaaattacaggggg 39014417  T
Q  119 ttaaatacatattaaccct 137  Q
     |||| |||||||||||||    
T  39014418 gtaaagacatattaaccct 39014436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 16 - 136
Target Start/End: Complemental strand, 43323908 - 43323790
Alignment:
Q  16 cataggtcagaggctaatatcaaagaatcttattttacagggttggaatttaaacnnnnnnnnn-acaggggagtaaaccggaactcgtctaaattacag 114  Q
    |||||||||| |||||| |||||| |||||||||||||||||||||||| |||||          ||||||| ||||||||||||||| |||||||||||    
T  43323908 cataggtcag-ggctaaaatcaaataatcttattttacagggttggaatctaaacttttttttttacagggg-gtaaaccggaactcgcctaaattacag 43323811  T
Q  115 ggggttaaatacatattaaccc 136  Q
    |||| |||||||||||||||||    
T  43323810 gggg-taaatacatattaaccc 43323790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 137
Target Start/End: Complemental strand, 3777246 - 3777125
Alignment:
Q  16 cataggtcagaggctaatatcaaagaatcttattttacagggttggaatttaaacnnnnnnnnn-acagg-ggagtaaaccggaactcgtctaaattaca 113  Q
    |||||||||| |||||| |||||||||||||| |||||||||||||||| |||||          | ||| || ||||||||||||||||||||||||||    
T  3777246 cataggtcaggggctaaaatcaaagaatcttaatttacagggttggaatctaaacttttttttttataggaggggtaaaccggaactcgtctaaattaca 3777147  T
Q  114 gggggttaaatacatattaaccct 137  Q
    ||||  ||||||||||||||||||    
T  3777146 gggg--taaatacatattaaccct 3777125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 20 - 138
Target Start/End: Complemental strand, 9555958 - 9555842
Alignment:
Q  20 ggtcagaggctaatatcaaagaatcttattttacagggttggaatttaaacnnnnnnnnnacaggggagtaaaccggaactcgtctaaattacagggggt 119  Q
    |||||| |||||| |||||||||| |||||||||||||||||||| |||||         ||||||| | ||||||||||||| | |||||||||||||     
T  9555958 ggtcaggggctaaaatcaaagaattttattttacagggttggaatctaaactttttttttacagggg-gaaaaccggaactcgcccaaattacaggggg- 9555861  T
Q  120 taaatacatattaaccctt 138  Q
    |||| ||||||||||||||    
T  9555860 taaagacatattaaccctt 9555842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 20 - 137
Target Start/End: Complemental strand, 43827220 - 43827103
Alignment:
Q  20 ggtcagaggctaatatcaaagaatcttattttacagggttggaatttaaacnnnnnnnnnacaggggagtaaaccggaactcgtctaaattacagggggt 119  Q
    |||||| |||||| ||||||||||||||||||| ||||||||||| |||||         |||||||  |||| ||||||| | | |||||||||||||     
T  43827220 ggtcaggggctaaaatcaaagaatcttattttatagggttggaatctaaactttttttttacagggggttaaatcggaacttgcccaaattacaggggga 43827121  T
Q  120 taaatacatattaaccct 137  Q
    |||| |||||||||||||    
T  43827120 taaagacatattaaccct 43827103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 80 - 137
Target Start/End: Complemental strand, 20164680 - 20164623
Alignment:
Q  80 acaggggagtaaaccggaactcgtctaaattacagggggttaaatacatattaaccct 137  Q
    ||||||| ||||||||||||||| | ||||||||||||| |||| |||||||||||||    
T  20164680 acaggggggtaaaccggaactcgcccaaattacaggggggtaaagacatattaaccct 20164623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 144 - 200
Target Start/End: Original strand, 2261363 - 2261419
Alignment:
Q  144 aattataaagcaggagtaccgatacacctcactttgtgaatctaccgtagaagttcc 200  Q
    |||||| |||||||||||||| ||||||||||||||||| | |||| ||||||||||    
T  2261363 aattatgaagcaggagtaccggtacacctcactttgtgagtgtaccatagaagttcc 2261419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 137
Target Start/End: Original strand, 26170335 - 26170453
Alignment:
Q  20 ggtcagaggctaatatcaaagaatcttattttacagggttggaatttaaac-nnnnnnnnnaca-ggggagtaaaccggaactcgtctaaattacagggg 117  Q
    |||||| |||| | ||||||||||||||||||||||||||||||| |||||          ||| |||| | ||||||||||||| ||||||||||||||    
T  26170335 ggtcaggggcttaaatcaaagaatcttattttacagggttggaatctaaacttttttttttacagggggggaaaaccggaactcgcctaaattacagggg 26170434  T
Q  118 gttaaatacatattaaccct 137  Q
    | |||| |||||||||||||    
T  26170435 g-taaagacatattaaccct 26170453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 144 - 200
Target Start/End: Complemental strand, 29454200 - 29454144
Alignment:
Q  144 aattataaagcaggagtaccgatacacctcactttgtgaatctaccgtagaagttcc 200  Q
    |||||| |||||||||||||| ||||||| ||||||||| | |||||||||||||||    
T  29454200 aattatgaagcaggagtaccggtacaccttactttgtgagtgtaccgtagaagttcc 29454144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 138
Target Start/End: Original strand, 20165804 - 20165921
Alignment:
Q  21 gtcagaggctaatatcaaagaatcttattttacagggttggaatttaaacnnnnnnnnn-acaggggagtaaaccggaactcgtctaaattacagggggt 119  Q
    ||||| |||||| ||||||||||||||| |||| |||||||||| |||||          ||||||| | ||||||||||||| | |||||| ||||||     
T  20165804 gtcaggggctaaaatcaaagaatcttatgttacggggttggaatctaaacttttttttttacagggg-gaaaaccggaactcgcccaaattagagggggg 20165902  T
Q  120 taaatacatattaaccctt 138  Q
    |||||||||||||||||||    
T  20165903 taaatacatattaaccctt 20165921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 137
Target Start/End: Original strand, 37483326 - 37483444
Alignment:
Q  20 ggtcagaggctaatatcaaagaatcttattttacagggttggaatttaaac---nnnnnnnnnacaggggagtaaaccggaactcgtctaaattacaggg 116  Q
    |||||| |||||| |||||| |||||||||||||||||||||||| |||||            ||||||| ||||||| ||||||||| |||||||||||    
T  37483326 ggtcaggggctaaaatcaaataatcttattttacagggttggaatctaaacttttttttttttacagggg-gtaaaccagaactcgtccaaattacaggg 37483424  T
Q  117 ggttaaatacatattaaccct 137  Q
    || |||| |||||||||||||    
T  37483425 gg-taaagacatattaaccct 37483444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 64
Target Start/End: Complemental strand, 33284497 - 33284448
Alignment:
Q  15 gcataggtcagaggctaatatcaaagaatcttattttacagggttggaat 64  Q
    ||||||||||| |||||| ||||||||||||||||| ||| |||||||||    
T  33284497 gcataggtcaggggctaaaatcaaagaatcttatttcacatggttggaat 33284448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 200
Target Start/End: Complemental strand, 10706612 - 10706556
Alignment:
Q  144 aattataaagcaggagtaccgatacacctcactttgtgaatctaccgtagaagttcc 200  Q
    |||||| ||||| |||||||  ||||||||||||||||| | |||||||||||||||    
T  10706612 aattatgaagcaagagtaccagtacacctcactttgtgagtgtaccgtagaagttcc 10706556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 200
Target Start/End: Complemental strand, 34165966 - 34165910
Alignment:
Q  144 aattataaagcaggagtaccgatacacctcactttgtgaatctaccgtagaagttcc 200  Q
    |||||| ||||| |||||||||||||||||||||||| | | ||| |||||||||||    
T  34165966 aattatgaagcaagagtaccgatacacctcactttgtaagtgtacggtagaagttcc 34165910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 139
Target Start/End: Complemental strand, 26169254 - 26169195
Alignment:
Q  80 acaggggagtaaaccggaactcgtctaaattacagggggttaaatacatattaaccctta 139  Q
    ||||||| | ||||||||||||| | ||||||||||||  |||| |||||||||||||||    
T  26169254 acaggggggaaaaccggaactcgcccaaattacaggggaataaagacatattaaccctta 26169195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 200
Target Start/End: Complemental strand, 26439561 - 26439510
Alignment:
Q  149 taaagcaggagtaccgatacacctcactttgtgaatctaccgtagaagttcc 200  Q
    ||||| |||||||||||||||||| | |||||| || |||||||||||||||    
T  26439561 taaagtaggagtaccgatacaccttaatttgtggatgtaccgtagaagttcc 26439510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 144 - 201
Target Start/End: Complemental strand, 38329508 - 38329451
Alignment:
Q  144 aattataaagcaggagtaccgatacacctcactttgtgaatctaccgtagaagttcct 201  Q
    |||||||||||  |||||||| || | |||||||||||| | ||||||||||||||||    
T  38329508 aattataaagcgagagtaccggtatatctcactttgtgagtgtaccgtagaagttcct 38329451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 80 - 137
Target Start/End: Complemental strand, 38982166 - 38982109
Alignment:
Q  80 acaggggagtaaaccggaactcgtctaaattacagggggttaaatacatattaaccct 137  Q
    ||||||| | |||||| |||||| | ||||||||||||| |||| |||||||||||||    
T  38982166 acaggggggaaaaccgaaactcgcccaaattacaggggggtaaagacatattaaccct 38982109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 80 - 137
Target Start/End: Complemental strand, 39013263 - 39013206
Alignment:
Q  80 acaggggagtaaaccggaactcgtctaaattacagggggttaaatacatattaaccct 137  Q
    ||||||| | |||||| |||||| | ||||||||||||| |||| |||||||||||||    
T  39013263 acaggggggaaaaccgaaactcgcccaaattacaggggggtaaagacatattaaccct 39013206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 80 - 137
Target Start/End: Original strand, 44058248 - 44058304
Alignment:
Q  80 acaggggagtaaaccggaactcgtctaaattacagggggttaaatacatattaaccct 137  Q
    ||||||||| ||||||||||||| | |||||||||| || |||| |||||||||||||    
T  44058248 acaggggaggaaaccggaactcgcccaaattacaggagg-taaagacatattaaccct 44058304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 199
Target Start/End: Original strand, 118166 - 118214
Alignment:
Q  151 aagcaggagtaccgatacacctcactttgtgaatctaccgtagaagttc 199  Q
    |||||||||||||| ||||||||| ||||||| | |||| |||||||||    
T  118166 aagcaggagtaccggtacacctcattttgtgagtgtaccatagaagttc 118214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 200
Target Start/End: Original strand, 1043409 - 1043465
Alignment:
Q  144 aattataaagcaggagtaccgatacacctcactttgtgaatctaccgtagaagttcc 200  Q
    |||||| |||||||| ||||  | ||||||||||||||| | |||||||||||||||    
T  1043409 aattatgaagcaggaataccagtgcacctcactttgtgagtgtaccgtagaagttcc 1043465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 200
Target Start/End: Complemental strand, 29265646 - 29265590
Alignment:
Q  144 aattataaagcaggagtaccgatacacctcactttgtgaatctaccgtagaagttcc 200  Q
    |||||| || || |||||||| ||||||||||||||||| | ||| |||||||||||    
T  29265646 aattatgaaacaagagtaccggtacacctcactttgtgagtgtacagtagaagttcc 29265590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 196
Target Start/End: Complemental strand, 44000618 - 44000566
Alignment:
Q  144 aattataaagcaggagtaccgatacacctcactttgtgaatctaccgtagaag 196  Q
    |||||| ||| | |||||||||||||||||| ||||||| | |||||||||||    
T  44000618 aattatgaagaaagagtaccgatacacctcattttgtgagtgtaccgtagaag 44000566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0862 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0862
Description:

Target: scaffold0862; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 16 - 137
Target Start/End: Original strand, 2087 - 2207
Alignment:
Q  16 cataggtcagaggctaatatcaaagaatcttattttacagggttggaatttaaac-nnnnnnnnnacaggggagtaaaccggaactcgtctaaattacag 114  Q
    |||||||||  |||||| ||||||||||||||||||||||||||||||| |||||          ||||||| | |||||||||||| ||||||||||||    
T  2087 cataggtcaagggctaaaatcaaagaatcttattttacagggttggaatctaaactttttttttaacagggg-gcaaaccggaactcttctaaattacag 2185  T
Q  115 ggggttaaatacatattaaccct 137  Q
    |||| ||||||||||||||||||    
T  2186 gggg-taaatacatattaaccct 2207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 47; Significance: 5e-18; HSPs: 2)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 16 - 136
Target Start/End: Complemental strand, 99733 - 99613
Alignment:
Q  16 cataggtcagaggctaatatcaaagaatcttattttacagggttggaatttaaac-nnnnnnnnnacaggggagtaaaccggaactcgtctaaattacag 114  Q
    |||||||||  |||||| ||||||||||||||||||||||||||||||| |||||          | ||||| |||||| |||||||| |||||||||||    
T  99733 cataggtcaagggctaaaatcaaagaatcttattttacagggttggaatctaaactttttttttcataggggggtaaactggaactcgcctaaattacag 99634  T
Q  115 ggggttaaatacatattaaccc 136  Q
    |||| |||||||||||||||||    
T  99633 gggg-taaatacatattaaccc 99613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 80 - 137
Target Start/End: Original strand, 100910 - 100967
Alignment:
Q  80 acaggggagtaaaccggaactcgtctaaattacagggggttaaatacatattaaccct 137  Q
    ||||||| ||||||||||||||| ||||||||||||||| |||| |||||||||||||    
T  100910 acaggggggtaaaccggaactcgcctaaattacaggggggtaaagacatattaaccct 100967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 5e-18; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 16 - 70
Target Start/End: Original strand, 5203720 - 5203774
Alignment:
Q  16 cataggtcagaggctaatatcaaagaatcttattttacagggttggaatttaaac 70  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||| |||||    
T  5203720 cataggtcagaggctaaaatcaaagaatcttattttacagggttggaatctaaac 5203774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 15249481 - 15249531
Alignment:
Q  20 ggtcagaggctaatatcaaagaatcttattttacagggttggaatttaaac 70  Q
    |||||| |||||| ||||||||||||||||||||||||||||||| |||||    
T  15249481 ggtcaggggctaaaatcaaagaatcttattttacagggttggaatctaaac 15249531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 43236002 - 43235952
Alignment:
Q  20 ggtcagaggctaatatcaaagaatcttattttacagggttggaatttaaac 70  Q
    |||||| |||||| ||||||||||||||||||||||||||| ||| |||||    
T  43236002 ggtcaggggctaaaatcaaagaatcttattttacagggttgtaatctaaac 43235952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 200
Target Start/End: Complemental strand, 7673345 - 7673296
Alignment:
Q  151 aagcaggagtaccgatacacctcactttgtgaatctaccgtagaagttcc 200  Q
    |||||||||||||| ||||||||| ||||||| | |||||||||||||||    
T  7673345 aagcaggagtaccggtacacctcattttgtgagtgtaccgtagaagttcc 7673296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 70
Target Start/End: Original strand, 18748750 - 18748791
Alignment:
Q  29 ctaatatcaaagaatcttattttacagggttggaatttaaac 70  Q
    |||| ||||||||||||||||||||||||||||||| |||||    
T  18748750 ctaaaatcaaagaatcttattttacagggttggaatctaaac 18748791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 200
Target Start/End: Complemental strand, 25331505 - 25331456
Alignment:
Q  151 aagcaggagtaccgatacacctcactttgtgaatctaccgtagaagttcc 200  Q
    |||||||||||||| ||||||||| ||||||| | |||||||||||||||    
T  25331505 aagcaggagtaccggtacacctcattttgtgagtgtaccgtagaagttcc 25331456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 200
Target Start/End: Complemental strand, 32602353 - 32602304
Alignment:
Q  151 aagcaggagtaccgatacacctcactttgtgaatctaccgtagaagttcc 200  Q
    |||||||||||||| ||||||||| ||||||| | |||||||||||||||    
T  32602353 aagcaggagtaccggtacacctcattttgtgagtgtaccgtagaagttcc 32602304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 200
Target Start/End: Complemental strand, 1580304 - 1580248
Alignment:
Q  144 aattataaagcaggagtaccgatacacctcactttgtgaatctaccgtagaagttcc 200  Q
    |||||| ||||| |||||||| ||||||||||||||||| | |||||||||| ||||    
T  1580304 aattatgaagcaagagtaccggtacacctcactttgtgagtgtaccgtagaaattcc 1580248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 192
Target Start/End: Original strand, 30981235 - 30981283
Alignment:
Q  144 aattataaagcaggagtaccgatacacctcactttgtgaatctaccgta 192  Q
    |||||| |||| ||||||||||||||||||||||||||| | |||||||    
T  30981235 aattatgaagcgggagtaccgatacacctcactttgtgagtgtaccgta 30981283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 200
Target Start/End: Complemental strand, 35895368 - 35895312
Alignment:
Q  144 aattataaagcaggagtaccgatacacctcactttgtgaatctaccgtagaagttcc 200  Q
    |||||| |||||||||||||| ||||||||||||| ||| | ||||||| |||||||    
T  35895368 aattatgaagcaggagtaccggtacacctcactttatgagtgtaccgtaaaagttcc 35895312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 70
Target Start/End: Original strand, 18860221 - 18860275
Alignment:
Q  16 cataggtcagaggctaatatcaaagaatcttattttacagggttggaatttaaac 70  Q
    |||||||||| || ||| ||||||||||||||||||||| | ||||||| |||||    
T  18860221 cataggtcaggggttaaaatcaaagaatcttattttacaagattggaatctaaac 18860275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 155 - 200
Target Start/End: Original strand, 9589474 - 9589519
Alignment:
Q  155 aggagtaccgatacacctcactttgtgaatctaccgtagaagttcc 200  Q
    |||||||||| ||||||||| ||||||| | |||||||||||||||    
T  9589474 aggagtaccggtacacctcattttgtgagtgtaccgtagaagttcc 9589519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 80 - 137
Target Start/End: Complemental strand, 15248445 - 15248388
Alignment:
Q  80 acaggggagtaaaccggaactcgtctaaattacagggggttaaatacatattaaccct 137  Q
    ||||||| | ||||||||||||| | ||||||||||||| |||| |||||||| ||||    
T  15248445 acaggggggaaaaccggaactcgcccaaattacaggggggtaaagacatattatccct 15248388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 135 - 200
Target Start/End: Original strand, 39620860 - 39620925
Alignment:
Q  135 ccttaatacaattataaagcaggagtaccgatacacctcactttgtgaatctaccgtagaagttcc 200  Q
    |||| ||| ||||||||||||| |||| || ||||||| ||||||| | | |||||||||||||||    
T  39620860 cctttataaaattataaagcagaagtatcggtacaccttactttgttagtgtaccgtagaagttcc 39620925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 135
Target Start/End: Complemental strand, 42211 - 42090
Alignment:
Q  16 cataggtcagaggctaatatcaaagaatcttattttacagggttggaatttaaac---nnnnnnnnnacaggggagtaaaccggaactcgtctaaattac 112  Q
    |||||||||| | |||| ||||||||||||||||||||||||||||||| |||||            |||| || ||||||||||||||| |||||||||    
T  42211 cataggtcagggcctaaaatcaaagaatcttattttacagggttggaatctaaacttttttttttttacagaggggtaaaccggaactcgcctaaattac 42112  T
Q  113 agggggttaaatacatattaacc 135  Q
    |||||| ||||||||||||||||    
T  42111 aggggg-taaatacatattaacc 42090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 20 - 134
Target Start/End: Original strand, 54449 - 54562
Alignment:
Q  20 ggtcagaggctaatatcaaagaatcttattttacagggttggaatttaaacnnnnnnnnnacaggggagtaaaccggaactcgtctaaattacagggggt 119  Q
    |||||| |||||| ||||||||||||||||||||||||||| ||| |||||         ||||||| | ||||||||||||| | |||||||||||||     
T  54449 ggtcaggggctaaaatcaaagaatcttattttacagggttgaaatctaaactttttttttacagggg-gaaaaccggaactcgcccaaattacagggggg 54547  T
Q  120 taaatacatattaac 134  Q
    |||| ||||||||||    
T  54548 taaagacatattaac 54562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0923 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0923
Description:

Target: scaffold0923; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 144 - 200
Target Start/End: Original strand, 34 - 90
Alignment:
Q  144 aattataaagcaggagtaccgatacacctcactttgtgaatctaccgtagaagttcc 200  Q
    |||||| |||||||||||||| ||||||||||||||||| | |||||||||||||||    
T  34 aattatgaagcaggagtaccggtacacctcactttgtgagtgtaccgtagaagttcc 90  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 144 - 200
Target Start/End: Original strand, 182 - 238
Alignment:
Q  144 aattataaagcaggagtaccgatacacctcactttgtgaatctaccgtagaagttcc 200  Q
    |||||| |||||| ||||||| ||||||||||||||||| | |||||||||||||||    
T  182 aattatgaagcagaagtaccggtacacctcactttgtgagtgtaccgtagaagttcc 238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1319 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold1319
Description:

Target: scaffold1319; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 200
Target Start/End: Complemental strand, 93 - 44
Alignment:
Q  151 aagcaggagtaccgatacacctcactttgtgaatctaccgtagaagttcc 200  Q
    ||||||||||||| |||||||||| ||||||| | |||||||||||||||    
T  93 aagcaggagtaccaatacacctcattttgtgagtgtaccgtagaagttcc 44  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0265 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0265
Description:

Target: scaffold0265; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 136
Target Start/End: Complemental strand, 18961 - 18915
Alignment:
Q  90 aaaccggaactcgtctaaattacagggggttaaatacatattaaccc 136  Q
    ||||||||||||| | ||||||||||||| |||| ||||||||||||    
T  18961 aaaccggaactcgcccaaattacaggggggtaaagacatattaaccc 18915  T

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Target: scaffold0300 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0300
Description:

Target: scaffold0300; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 80 - 137
Target Start/End: Complemental strand, 15792 - 15735
Alignment:
Q  80 acaggggagtaaaccggaactcgtctaaattacagggggttaaatacatattaaccct 137  Q
    ||||||| | ||||| ||||||| | ||||||||||||| |||| |||||||||||||    
T  15792 acaggggggaaaaccagaactcgcccaaattacaggggggtaaaaacatattaaccct 15735  T

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