View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21321_high_38 (Length: 212)

Name: NF21321_high_38
Description: NF21321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21321_high_38
NF21321_high_38
[»] chr6 (5 HSPs)
chr6 (1-196)||(23256312-23256507)
chr6 (1-131)||(23253755-23253888)
chr6 (66-124)||(7728399-7728458)
chr6 (110-186)||(8855262-8855339)
chr6 (123-196)||(17163560-17163633)
[»] chr8 (2 HSPs)
chr8 (43-196)||(17782275-17782428)
chr8 (34-123)||(17786408-17786496)
[»] chr5 (4 HSPs)
chr5 (51-192)||(25632666-25632807)
chr5 (1-123)||(16117589-16117710)
chr5 (119-191)||(26454402-26454474)
chr5 (123-196)||(26336956-26337029)
[»] chr7 (1 HSPs)
chr7 (74-192)||(22580866-22580985)
[»] chr2 (2 HSPs)
chr2 (77-123)||(28447835-28447881)
chr2 (123-196)||(35950587-35950660)
[»] chr3 (1 HSPs)
chr3 (112-176)||(1299022-1299087)


Alignment Details
Target: chr6 (Bit Score: 176; Significance: 5e-95; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 23256507 - 23256312
Alignment:
Q  1 tatgctcaaatctagcaaaaacagtaacaaactaataaccaactataaccaacttggttacaatgtgttttagccaaacaagccttgattaaaacactaa 100  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  23256507 tatgctaaaatctagcaaaaacagtaacaaactaataaccaactataagcaacttggttacaatgtgttttaaccaaacaagccttgattaaaacactaa 23256408  T
Q  101 tcaactatactaacttgaattaaaaccaacatcctcccttaattctggtttccattttcaccataccagtcaagctgcttagcttgatgaacctgt 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||    
T  23256407 tcaactatactaacttgaattaaaaccaacatcctcccttaattctggtttccattttcaccaaaccagtcaagcttcttagcttgatgaacctgt 23256312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 23253888 - 23253755
Alignment:
Q  1 tatgctcaaatctagcaaaaacagtaacaaa--ctaataaccaactataaccaacttggttacaatgtgttttagccaaac-aagccttgattaaaacac 97  Q
    |||||| |||||||||||||||||||| |||  ||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||  |    
T  23253888 tatgctaaaatctagcaaaaacagtaaaaaaaactaataaccaactataaccaatttggttacaatgtgttttaaccaaacaaagccttgattaaaatgc 23253789  T
Q  98 taatcaactatactaacttgaattaaaaccaaca 131  Q
    ||||||||||||||||||| ||||||||||||||    
T  23253788 taatcaactatactaacttaaattaaaaccaaca 23253755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 66 - 124
Target Start/End: Complemental strand, 7728458 - 7728399
Alignment:
Q  66 tgttttagccaaacaagccttgattaaaa-cactaatcaactatactaacttgaattaaa 124  Q
    ||||||| |||||||| |||||||||||| ||||||||| ||| ||||||||||||||||    
T  7728458 tgttttaaccaaacaaaccttgattaaaaacactaatcatctaaactaacttgaattaaa 7728399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 110 - 186
Target Start/End: Original strand, 8855262 - 8855339
Alignment:
Q  110 ctaacttgaattaaaaccaacatcctcccttaattc-tggtttccattttcaccataccagtcaagctgcttagcttg 186  Q
    ||||||||||||||||| ||||||||||||||||||  | ||||||  |||||||| ||| ||||||| || ||||||    
T  8855262 ctaacttgaattaaaactaacatcctcccttaattcaagttttccaacttcaccattccaatcaagcttctgagcttg 8855339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 123 - 196
Target Start/End: Complemental strand, 17163633 - 17163560
Alignment:
Q  123 aaaccaacatcctcccttaattctggtttccattttcaccataccagtcaagctgcttagcttgatgaacctgt 196  Q
    |||| ||||||||||||||||||  ||||||| || |  ||||||| ||||||| || ||||||||||| ||||    
T  17163633 aaactaacatcctcccttaattcaagtttccacttccttcataccaatcaagcttctgagcttgatgaatctgt 17163560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 43 - 196
Target Start/End: Original strand, 17782275 - 17782428
Alignment:
Q  43 ctataaccaacttggttacaatgtgttttagccaaacaagccttgattaaaacactaatcaactatactaacttgaattaa-aaccaacatcctccctta 141  Q
    |||||||||||||||| ||||| ||||||| |||||||||| |||||||||||| |||||| ||| ||||||||||||||| ||| ||||||||||||||    
T  17782275 ctataaccaacttggtgacaatatgttttaaccaaacaagctttgattaaaacattaatca-ctacactaacttgaattaacaactaacatcctccctta 17782373  T
Q  142 attctggtttccattttcaccataccagtcaagctgcttagcttgatgaacctgt 196  Q
    ||||  ||||||| ||||||||||||| ||||||| |||||||||||||||||||    
T  17782374 attcaagtttccactttcaccataccaatcaagcttcttagcttgatgaacctgt 17782428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 34 - 123
Target Start/End: Original strand, 17786408 - 17786496
Alignment:
Q  34 aataaccaactataaccaacttggttacaatgtgttttagccaaacaagccttgattaaaacactaatcaactatactaacttgaattaa 123  Q
    |||||||||||||| |||||| ||||||||||||||||| |||||||| ||||||||||||||||||||| | |||||||||||||||||    
T  17786408 aataaccaactatatccaactgggttacaatgtgttttaaccaaacaatccttgattaaaacactaatcatc-atactaacttgaattaa 17786496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 86; Significance: 3e-41; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 51 - 192
Target Start/End: Complemental strand, 25632807 - 25632666
Alignment:
Q  51 aacttggttacaatgtgttttagccaaacaagccttgattaaaacactaatcaactatactaacttgaattaaaaccaacatcctcccttaattctggtt 150  Q
    ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||  |||    
T  25632807 aacttggttactatgtgttttaaccaaacaagccttgattaaaacactaatcaactatactaacttgaattaaaactaacatccttccttaattcaagtt 25632708  T
Q  151 tccattttcaccataccagtcaagctgcttagcttgatgaac 192  Q
    | || | ||||||||||| ||| ||| || || |||||||||    
T  25632707 ttcactctcaccataccaatcaggcttctcagtttgatgaac 25632666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 16117710 - 16117589
Alignment:
Q  1 tatgctcaaatctagcaaaaacagtaacaaactaataaccaactataaccaacttggttacaatgtgttttagccaaacaagccttgattaaaacactaa 100  Q
    |||||| ||||| ||||||| | |||||||| |  |||| ||||| | | |||||| |||| ||||| |||| |||||||||  ||||||||| ||||||    
T  16117710 tatgctaaaatcaagcaaaacc-gtaacaaagttttaacaaactaaatctaacttgattactatgtgatttaaccaaacaagttttgattaaatcactaa 16117612  T
Q  101 tcaactatactaacttgaattaa 123  Q
    ||||||| |||| ||||||||||    
T  16117611 tcaactacactatcttgaattaa 16117589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 191
Target Start/End: Original strand, 26454402 - 26454474
Alignment:
Q  119 attaaaaccaacatcctcccttaattctggtttccattttcaccataccagtcaagctgcttagcttgatgaa 191  Q
    |||||||| ||| ||||||||||||||  ||||||| ||  ||||||||| ||| ||| ||||||||||||||    
T  26454402 attaaaactaacttcctcccttaattcaagtttccacttcaaccataccaatcatgctccttagcttgatgaa 26454474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 123 - 196
Target Start/End: Original strand, 26336956 - 26337029
Alignment:
Q  123 aaaccaacatcctcccttaattctggtttccattttcaccataccagtcaagctgcttagcttgatgaacctgt 196  Q
    |||| ||||||||||||||||||  ||||||| || |  ||| ||| ||||||| || ||||||||||||||||    
T  26336956 aaactaacatcctcccttaattcaagtttccacttccttcattccaatcaagcttctgagcttgatgaacctgt 26337029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 74 - 192
Target Start/End: Complemental strand, 22580985 - 22580866
Alignment:
Q  74 ccaaacaagccttgattaaaacactaatcaactatactaacttgaattaa--aaccaacatcctcccttaattctggtttccattttcaccataccagtc 171  Q
    |||||||| ||||||||||  |||||||||  ||| ||||||||||||||  ||| ||||||||||||||||||  ||||||| ||||||||||| | |     
T  22580985 ccaaacaa-ccttgattaagtcactaatcacttattctaacttgaattaacaaactaacatcctcccttaattcaagtttccactttcaccatactaatt 22580887  T
Q  172 aagctgcttagcttgatgaac 192  Q
    | ||| |||||||||||||||    
T  22580886 atgcttcttagcttgatgaac 22580866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 77 - 123
Target Start/End: Complemental strand, 28447881 - 28447835
Alignment:
Q  77 aacaagccttgattaaaacactaatcaactatactaacttgaattaa 123  Q
    |||||| |||||||||| |||||||||||||||||||||||||||||    
T  28447881 aacaagacttgattaaatcactaatcaactatactaacttgaattaa 28447835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 123 - 196
Target Start/End: Original strand, 35950587 - 35950660
Alignment:
Q  123 aaaccaacatcctcccttaattctggtttccattttcaccataccagtcaagctgcttagcttgatgaacctgt 196  Q
    |||| ||||||||||||||||||  ||||||| || |  ||| ||| ||||||| || ||||||||||||||||    
T  35950587 aaactaacatcctcccttaattcaagtttccacttccttcattccaatcaagcttctaagcttgatgaacctgt 35950660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 112 - 176
Target Start/End: Complemental strand, 1299087 - 1299022
Alignment:
Q  112 aacttgaatta-aaaccaacatcctcccttaattctggtttccattttcaccataccagtcaagct 176  Q
    ||||||||||| |||| ||||||||||||||||||  ||||||| ||  ||||||||| |||||||    
T  1299087 aacttgaattagaaactaacatcctcccttaattcaagtttccaattctaccataccaatcaagct 1299022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University