View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21321_high_6 (Length: 520)
Name: NF21321_high_6
Description: NF21321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21321_high_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 489; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 16 - 512
Target Start/End: Original strand, 9790254 - 9790750
Alignment:
| Q |
16 |
aaaccaccctttggaacaaaaatttgaagtctcctaaatctactagactactagagtaaataatctatattggacacattcttactgaaattgttttgta |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
9790254 |
aaaccaccctttggaacaaaaatttgaagtctcctaaatctactagactactagagtaaataatctatattggacacattcttattgaaattgttttgta |
9790353 |
T |
|
| Q |
116 |
gactcaaactaagtagcagtgatttccaaatacattggtcaggaaggatacccttctctaccatttccaaaaagacctgcaaagctttctgaatgtcccc |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9790354 |
gactcaaactaagtagcagtgatttccaaatacattggtcaggaaggatacccttctctaccatttccaaaaagacctgcaaagctttctgaatgtcccc |
9790453 |
T |
|
| Q |
216 |
cttcctacataacacatcaatcaaagggctgtaagtttctgtatttggtacacaacctcttgcagtaatatcttccataaactttaaggcactttcaatt |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9790454 |
cttcctacataacacatcaatcaaagggctgtaagtttctgtatttggtacacaacctcttgcagtaatatcttccataaactttaaggcactttcaatt |
9790553 |
T |
|
| Q |
316 |
tttccttgttcacaaaactcagtgatgatagcattgaatgtggatgcaatgggaaaacagttattacttatcatttcattgataagctcaacggcctctc |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9790554 |
tttccttgttcacaaaactcagtgatgatagcattgaatgtggatgcaatgggaaaacagttattacttatcatttcattgataagctcaacggcctctc |
9790653 |
T |
|
| Q |
416 |
ggatactaccgtgttgcgaaaagccatgaacaagagagttataaacaagaatacttggaataccaccttcatcaatcatcttatcatatatattctt |
512 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9790654 |
ggatactaccgtgttgcgaaaagccatgaacaagagagttataaactagaatacttggaataccaccttcatcaatcatcttatcatatatattctt |
9790750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 16 - 158
Target Start/End: Original strand, 9787450 - 9787590
Alignment:
| Q |
16 |
aaaccaccctttggaacaaaaatttgaagtctcctaaatctactagactactagagtaaataatctatattggacacattcttactgaaattgttttgta |
115 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
9787450 |
aaaccaccctttggaacaaa--tttgaagtctccctaatccactagactactagattaaataatctatattggacacattcttcctgaaattgttttgta |
9787547 |
T |
|
| Q |
116 |
gactcaaactaagtagcagtgatttccaaatacattggtcagg |
158 |
Q |
| |
|
||| |||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
9787548 |
gacccaaactaagtagcagtgatttccaaataaattggccagg |
9787590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University