View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21321_high_8 (Length: 411)

Name: NF21321_high_8
Description: NF21321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21321_high_8
NF21321_high_8
[»] chr8 (8 HSPs)
chr8 (19-399)||(4130272-4130652)
chr8 (19-399)||(4120191-4120568)
chr8 (19-399)||(4150635-4151016)
chr8 (201-398)||(4142806-4143003)
chr8 (203-399)||(4159837-4160033)
chr8 (19-112)||(4159636-4159729)
chr8 (19-106)||(4142617-4142704)
chr8 (258-299)||(10401662-10401703)
[»] chr7 (17 HSPs)
chr7 (273-398)||(19939021-19939146)
chr7 (273-398)||(19970160-19970285)
chr7 (22-103)||(20062380-20062461)
chr7 (273-398)||(20284855-20284980)
chr7 (25-105)||(20303863-20303943)
chr7 (262-395)||(20289169-20289302)
chr7 (315-398)||(20062632-20062715)
chr7 (22-103)||(20294824-20294905)
chr7 (262-398)||(20168098-20168234)
chr7 (262-398)||(20279425-20279561)
chr7 (22-65)||(20279703-20279746)
chr7 (25-103)||(20243796-20243874)
chr7 (22-104)||(20289417-20289499)
chr7 (273-398)||(20005402-20005527)
chr7 (22-98)||(20167901-20167977)
chr7 (262-374)||(20243546-20243658)
chr7 (274-398)||(20294572-20294696)
[»] chr4 (3 HSPs)
chr4 (262-398)||(40823849-40823985)
chr4 (22-104)||(40823652-40823734)
chr4 (277-341)||(36366446-36366510)
[»] chr2 (1 HSPs)
chr2 (273-308)||(37713838-37713873)
[»] chr6 (2 HSPs)
chr6 (259-299)||(20233288-20233328)
chr6 (259-299)||(22127272-22127312)
[»] chr3 (1 HSPs)
chr3 (268-376)||(5488882-5488990)


Alignment Details
Target: chr8 (Bit Score: 369; Significance: 0; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 19 - 399
Target Start/End: Original strand, 4130272 - 4130652
Alignment:
Q  19 aataaaacaccaaagctatatacatctgatttctctgagaaaagtccccccattgcatattcaggcggcatataaccactacatttagagcatatatatt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4130272 aataaaacaccaaagctatatacatctgatttctctgagaaaagtccccccattgcatattcaggcggcatataaccactacatttagagcatatatatt 4130371  T
Q  119 ataacaagtacatatgtaataactaactcactaatttgtaagattaattattttaacattatattgtcaaatgatataggaatacttactaagttccaac 218  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4130372 ataataagtacatatgtaataactaactcactaatttgtaagattaattattttaacattatattgtcaaatgatataggaatacttactaagttccaac 4130471  T
Q  219 aaccctttttgtgttagcttcatcaccttctccacctttaacaattctagctaaaccaaagtctgatatttttggaatcatctcatcatcaagtaagatg 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4130472 aaccctttttgtgttagcttcatcaccttctccacctttaacaattctagctaaaccaaagtctgatatttttggaatcatctcatcatcaagtaagatg 4130571  T
Q  319 ttgcttgcttttaaatctctatgtataattttaagtctcgagtctctatgaagatacattattcctcgagctattccttca 399  Q
    |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4130572 ttgcttgcttttaaatctctgtgtataatcttaagtctcgagtctctatgaagatacattattcctcgagctattccttca 4130652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 19 - 399
Target Start/End: Original strand, 4120191 - 4120568
Alignment:
Q  19 aataaaacaccaaagctatatacatctgatttctctgagaaaagtccccccattgcatattcaggcggcatataaccactacatttagagcatatatatt 118  Q
    |||||||| |||||||||||||||||||||||||| |||||||| ||| ||||||||||||| ||||||||||||||||| |||||| ||||||||| ||    
T  4120191 aataaaaccccaaagctatatacatctgatttctcagagaaaagcccctccattgcatattctggcggcatataaccactgcatttaaagcatatatgtt 4120290  T
Q  119 ataacaagtacatatgtaataactaactcactaatttgtaagattaattattttaacattatattgtcaaatgatataggaatacttactaagttccaac 218  Q
    |||| ||   ||   ||||| | |||   | | |||||||  |||||| ||   |||| |||| |||  ||||| |||||| ||||||||||||||| ||    
T  4120291 ataataa---caggagtaatgattaaacaattcatttgtagcattaataatcccaacaatataatgttcaatgagataggattacttactaagttccgac 4120387  T
Q  219 aaccctttttgtgttagcttcatcaccttctccacctttaacaattctagctaaaccaaagtctgatatttttggaatcatctcatcatcaagtaagatg 318  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||  ||||||||||||      
T  4120388 aacccttttcgtgttagcttcatcatcttctccacctttaacaattctagctaacccaaagtctgatatctttggaatcatgtctccatcaagtaagaca 4120487  T
Q  319 ttgcttgcttttaaatctctatgtataattttaagtctcgagtctctatgaagatacattattcctcgagctattccttca 399  Q
    ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  4120488 ttgcttgcttttaaatctctatgtataatcttaagtcttgagtctctatgaagatacattatacctcgagctattccttca 4120568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 19 - 399
Target Start/End: Original strand, 4150635 - 4151016
Alignment:
Q  19 aataaaacaccaaagctatatacatctgatttctctgagaaaagtccccccattgcatattcaggcggcatataaccactacatttagagcatatat-at 117  Q
    |||| ||| ||||||||||| ||||||||||| || |||||||| ||| ||||||||||||||||||||||||||||||| |||||||| ||||| | |     
T  4150635 aatagaaccccaaagctatagacatctgatttttcagagaaaagcccctccattgcatattcaggcggcatataaccactgcatttagaacatatgttac 4150734  T
Q  118 tataac---aagtacatatgtaataactaactcactaatttgtaagattaattattttaacattatattgtcaaatgatataggaatacttactaagttc 214  Q
    ||||||   ||||| | |    | || |||  |||| |||||||| | |||||     ||||||||| | |||||||| |||| | ||||||||||||||    
T  4150735 tataaccccaagtaaaaaaaataaaattaaaccactcatttgtaacactaattcc---aacattataatatcaaatgagatagtactacttactaagttc 4150831  T
Q  215 caacaaccctttttgtgttagcttcatcaccttctccacctttaacaattctagctaaaccaaagtctgatatttttggaatcatctcatcatcaagtaa 314  Q
    ||||||||||||||||||||||||||||| ||||||||  |||||||||||| |||||||| ||||||||||||||||||||||| |||  |||||||||    
T  4150832 caacaaccctttttgtgttagcttcatcatcttctccaaatttaacaattcttgctaaaccgaagtctgatatttttggaatcatgtcactatcaagtaa 4150931  T
Q  315 gatgttgcttgcttttaaatctctatgtataattttaagtctcgagtctctatgaagatacattattcctcgagctattccttca 399  Q
    ||||||||||||||||| |||||||||||| ||  | ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  4150932 gatgttgcttgcttttagatctctatgtatgatccttagtctcgagtctctatgaagatacattatacctcgagctattccttca 4151016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 201 - 398
Target Start/End: Original strand, 4142806 - 4143003
Alignment:
Q  201 tacttactaagttccaacaaccctttttgtgttagcttcatcaccttctccacctttaacaattctagctaaaccaaagtctgatatttttggaatcatc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||  |||||||||||||||||||||||||||||||||||||||||||||     
T  4142806 tacttactaagttccaacaaccctttttgtgttagcttcatcatcttctccaaatttaacaattctagctaaaccaaagtctgatatttttggaatcatg 4142905  T
Q  301 tcatcatcaagtaagatgttgcttgcttttaaatctctatgtataattttaagtctcgagtctctatgaagatacattattcctcgagctattccttc 398  Q
    ||  |||||||||||| |||||| |||||||||||||||||||||||  | ||||| ||||||||||||||||||||||| ||||||||||| |||||    
T  4142906 tcgccatcaagtaagacgttgctggcttttaaatctctatgtataatccttagtcttgagtctctatgaagatacattatacctcgagctatcccttc 4143003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 203 - 399
Target Start/End: Original strand, 4159837 - 4160033
Alignment:
Q  203 cttactaagttccaacaaccctttttgtgttagcttcatcaccttctccacctttaacaattctagctaaaccaaagtctgatatttttggaatcatctc 302  Q
    |||||||||||||||||||||| |||||||| | ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  4159837 cttactaagttccaacaaccctatttgtgtttgtttcatcatcttctcctcctttaacaattctagctaaaccaaagtctgatatttttggaaccatctc 4159936  T
Q  303 atcatcaagtaagatgttgcttgcttttaaatctctatgtataattttaagtctcgagtctctatgaagatacattattcctcgagctattccttca 399  Q
      ||||||||||||||||||||||||||||||| | |||||||||  | || |||||||||||||||||||| | ||| ||||||||||| ||||||    
T  4159937 cccatcaagtaagatgttgcttgcttttaaatcccgatgtataatccttagcctcgagtctctatgaagataaagtatacctcgagctatgccttca 4160033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 19 - 112
Target Start/End: Original strand, 4159636 - 4159729
Alignment:
Q  19 aataaaacaccaaagctatatacatctgatttctctgagaaaagtccccccattgcatattcaggcggcatataaccactacatttagagcata 112  Q
    |||||||| ||||||||||| |||||||||||||| || ||||||||  ||||||||||||||||||||||||||||||| |||||||||||||    
T  4159636 aataaaactccaaagctataaacatctgatttctcagaaaaaagtccttccattgcatattcaggcggcatataaccactgcatttagagcata 4159729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 19 - 106
Target Start/End: Original strand, 4142617 - 4142704
Alignment:
Q  19 aataaaacaccaaagctatatacatctgatttctctgagaaaagtccccccattgcatattcaggcggcatataaccactacatttag 106  Q
    |||||||| || || ||||| ||||||||||||||||||||||| ||| |||||||||||||||| |||||||||||||| |||||||    
T  4142617 aataaaactccgaaactatagacatctgatttctctgagaaaagcccctccattgcatattcaggtggcatataaccactgcatttag 4142704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 299
Target Start/End: Original strand, 10401662 - 10401703
Alignment:
Q  258 aacaattctagctaaaccaaagtctgatatttttggaatcat 299  Q
    |||||||||||| | |||||| ||||||||||||||||||||    
T  10401662 aacaattctagcaagaccaaaatctgatatttttggaatcat 10401703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 273 - 398
Target Start/End: Complemental strand, 19939146 - 19939021
Alignment:
Q  273 accaaagtctgatatttttggaatcatctcatcatcaagtaagatgttgcttgcttttaaatctctatgtataattttaagtctcgagtctctatgaaga 372  Q
    |||||||||||||||||||||| | | ||||| ||| || ||||| || ||||  || |||||||||||||||||||| ||||| || ||||| || |||    
T  19939146 accaaagtctgatatttttggattaagctcattatctagcaagatattacttggcttcaaatctctatgtataatttttagtctggaatctctgtgcaga 19939047  T
Q  373 tacattattcctcgagctattccttc 398  Q
    ||||  | ||||||||||||||||||    
T  19939046 tacaacaatcctcgagctattccttc 19939021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 273 - 398
Target Start/End: Complemental strand, 19970285 - 19970160
Alignment:
Q  273 accaaagtctgatatttttggaatcatctcatcatcaagtaagatgttgcttgcttttaaatctctatgtataattttaagtctcgagtctctatgaaga 372  Q
    |||||||||||||||||||||| | | ||||| ||| || ||||| || ||||  || |||||||||||||||||||| ||||| || ||||| || |||    
T  19970285 accaaagtctgatatttttggattaagctcattatctagcaagatattacttggcttcaaatctctatgtataatttttagtctggaatctctgtgcaga 19970186  T
Q  373 tacattattcctcgagctattccttc 398  Q
    ||||  | ||||||||||||||||||    
T  19970185 tacaacaatcctcgagctattccttc 19970160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 22 - 103
Target Start/End: Original strand, 20062380 - 20062461
Alignment:
Q  22 aaaacaccaaagctatatacatctgatttctctgagaaaagtccccccattgcatattcaggcggcatataaccactacatt 103  Q
    ||||||||||||||| | ||||||||||||||||| ||||||||   |||||| |||||||| | |||||||||||| ||||    
T  20062380 aaaacaccaaagctaaaaacatctgatttctctgaaaaaagtccttgcattgcgtattcaggagacatataaccactgcatt 20062461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 273 - 398
Target Start/End: Complemental strand, 20284980 - 20284855
Alignment:
Q  273 accaaagtctgatatttttggaatcatctcatcatcaagtaagatgttgcttgcttttaaatctctatgtataattttaagtctcgagtctctatgaaga 372  Q
    |||||||||||||||||||||| ||| ||| ||||| |  ||||  || ||||| || ||||||||||| |||||| | ||||| || ||||| ||||||    
T  20284980 accaaagtctgatatttttggattcagctcctcatctaacaagacattacttgccttcaaatctctatgaataattcttagtctagaatctctgtgaaga 20284881  T
Q  373 tacattattcctcgagctattccttc 398  Q
    || |  | ||||||||||||||||||    
T  20284880 tatagcaatcctcgagctattccttc 20284855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 25 - 105
Target Start/End: Complemental strand, 20303943 - 20303863
Alignment:
Q  25 acaccaaagctatatacatctgatttctctgagaaaagtccccccattgcatattcaggcggcatataaccactacattta 105  Q
    |||||||||||| | ||||||||||||||||| |||||||| | |||||| |||||||| | |||||| ||||| ||||||    
T  20303943 acaccaaagctaaaaacatctgatttctctgaaaaaagtcctcgcattgcgtattcaggagacatatagccactgcattta 20303863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 262 - 395
Target Start/End: Complemental strand, 20289302 - 20289169
Alignment:
Q  262 attctagctaaaccaaagtctgatatttttggaatcatctcatcatcaagtaagatgttgcttgcttttaaatctctatgtataattttaagtctcgagt 361  Q
    |||||||| | |||||||||||||||||| ||| ||| ||| || || |  |||||||| ||||  ||||||||||| ||||||||| | | | | || |    
T  20289302 attctagccataccaaagtctgatattttgggattcaactcctcgtctaacaagatgttacttgtctttaaatctctgtgtataattctcaatttggaat 20289203  T
Q  362 ctctatgaagatacattattcctcgagctattcc 395  Q
    ||||||||||||| |  | |||||||||||||||    
T  20289202 ctctatgaagataaagcaatcctcgagctattcc 20289169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 315 - 398
Target Start/End: Original strand, 20062632 - 20062715
Alignment:
Q  315 gatgttgcttgcttttaaatctctatgtataattttaagtctcgagtctctatgaagatacattattcctcgagctattccttc 398  Q
    |||||| ||||| || |||||||| ||||||||| | ||||  || ||||| |||||||||| || ||||||||||||||||||    
T  20062632 gatgttacttgccttcaaatctctgtgtataattctgagtcgggaatctctgtgaagatacaataatcctcgagctattccttc 20062715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 22 - 103
Target Start/End: Complemental strand, 20294905 - 20294824
Alignment:
Q  22 aaaacaccaaagctatatacatctgatttctctgagaaaagtccccccattgcatattcaggcggcatataaccactacatt 103  Q
    ||||||||||||||| | ||||||||||||||||| || | |||   ||||||||||||||| | |||||| ||||| ||||    
T  20294905 aaaacaccaaagctaaaaacatctgatttctctgaaaataatccttgcattgcatattcaggagacatatagccactgcatt 20294824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 262 - 398
Target Start/End: Original strand, 20168098 - 20168234
Alignment:
Q  262 attctagctaaaccaaagtctgatatttttggaatcatctcatcatcaagtaagatgttgcttgcttttaaatctctatgtataattttaagtctcgagt 361  Q
    |||||||| | |||||| ||||||||||||||| ||| ||| ||||| |  ||||  || ||||| || ||||||||||| |||||| | ||||| || |    
T  20168098 attctagccataccaaattctgatatttttggattcaactcctcatctaacaagacattacttgccttcaaatctctatgaataattcttagtctggaat 20168197  T
Q  362 ctctatgaagatacattattcctcgagctattccttc 398  Q
    |||| || ||||| |  | ||| ||||||||||||||    
T  20168198 ctctgtggagatatagcaatccacgagctattccttc 20168234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 262 - 398
Target Start/End: Complemental strand, 20279561 - 20279425
Alignment:
Q  262 attctagctaaaccaaagtctgatatttttggaatcatctcatcatcaagtaagatgttgcttgcttttaaatctctatgtataattttaagtctcgagt 361  Q
    |||||||| | |||||||||||||||||||||| ||| ||| ||||| |  | ||  || ||||| || |||||||| || |||||| | ||||| || |    
T  20279561 attctagccataccaaagtctgatatttttggattcagctcctcatctaacaggacattacttgccttcaaatctctgtgaataattcttagtctggaat 20279462  T
Q  362 ctctatgaagatacattattcctcgagctattccttc 398  Q
    |||| |||||||| |  | ||| ||||||||||||||    
T  20279461 ctctgtgaagatatagcaatccgcgagctattccttc 20279425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 22 - 65
Target Start/End: Complemental strand, 20279746 - 20279703
Alignment:
Q  22 aaaacaccaaagctatatacatctgatttctctgagaaaagtcc 65  Q
    ||||||||||||||| | ||||||||||||||||| ||||||||    
T  20279746 aaaacaccaaagctaaaaacatctgatttctctgaaaaaagtcc 20279703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 103
Target Start/End: Complemental strand, 20243874 - 20243796
Alignment:
Q  25 acaccaaagctatatacatctgatttctctgagaaaagtccccccattgcatattcaggcggcatataaccactacatt 103  Q
    |||||||||||| | ||||||||||||||||| || | |||   ||||||||||||||| | ||| || ||||||||||    
T  20243874 acaccaaagctaaaaacatctgatttctctgaaaataatccttgcattgcatattcaggagacatgtagccactacatt 20243796  T

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Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 104
Target Start/End: Complemental strand, 20289499 - 20289417
Alignment:
Q  22 aaaacaccaaagctatatacatctgatttctctgagaaaagtccccccattgcatattcaggcggcatataaccactacattt 104  Q
    ||||||||||||||| | ||||||||||||||||| || |||||   |||||| ||||| || |  ||||||||||| |||||    
T  20289499 aaaacaccaaagctaaagacatctgatttctctgaaaacagtccttgcattgcgtattcgggagatatataaccactgcattt 20289417  T

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Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 398
Target Start/End: Original strand, 20005402 - 20005527
Alignment:
Q  273 accaaagtctgatatttttggaatcatctcatcatcaagtaagatgttgcttgcttttaaatctctatgtataattttaagtctcgagtctctatgaaga 372  Q
    ||||||||| |||||||||||| |||  |  || || || ||||| || |||||||| | |||||||||||| ||||| || || || |||||||| |||    
T  20005402 accaaagtcagatatttttggattcaggttctcgtctagcaagatattacttgctttcatatctctatgtatgatttttagcctggaatctctatgcaga 20005501  T
Q  373 tacattattcctcgagctattccttc 398  Q
    || |  | ||| ||||||||||||||    
T  20005502 taaagcaatccacgagctattccttc 20005527  T

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Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 98
Target Start/End: Original strand, 20167901 - 20167977
Alignment:
Q  22 aaaacaccaaagctatatacatctgatttctctgagaaaagtccccccattgcatattcaggcggcatataaccact 98  Q
    ||||||||||||||| | ||||||||||||||||| || |||||   ||||||||| || || | |||||| |||||    
T  20167901 aaaacaccaaagctaaacacatctgatttctctgaaaatagtccttgcattgcatactcgggagacatatagccact 20167977  T

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Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 374
Target Start/End: Complemental strand, 20243658 - 20243546
Alignment:
Q  262 attctagctaaaccaaagtctgatatttttggaatcatctcatcatcaagtaagatgttgcttgcttttaaatctctatgtataattttaagtctcgagt 361  Q
    |||||||| | |||||||||||||||||||||| ||| ||| ||||| |  | ||  || ||||| || ||||||||||| |||||| | || || || |    
T  20243658 attctagccagaccaaagtctgatatttttggattcaactcctcatctaacaggacattacttgccttcaaatctctatgaataattcttagcctagaat 20243559  T
Q  362 ctctatgaagata 374  Q
    |||| ||||||||    
T  20243558 ctctgtgaagata 20243546  T

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Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 274 - 398
Target Start/End: Complemental strand, 20294696 - 20294572
Alignment:
Q  274 ccaaagtctgatatttttggaatcatctcatcatcaagtaagatgttgcttgcttttaaatctctatgtataattttaagtctcgagtctctatgaagat 373  Q
    |||||||| |||||||||||| ||| ||| ||||| |  | ||  || ||||| || ||||||||||| |||||| | || || || ||||  |||||||    
T  20294696 ccaaagtccgatatttttggattcagctcctcatctaacaggacattacttgccttcaaatctctatgaataattcttagcctagaatctcggtgaagat 20294597  T
Q  374 acattattcctcgagctattccttc 398  Q
    |||  | ||||||||||||||||||    
T  20294596 acagcaatcctcgagctattccttc 20294572  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 262 - 398
Target Start/End: Original strand, 40823849 - 40823985
Alignment:
Q  262 attctagctaaaccaaagtctgatatttttggaatcatctcatcatcaagtaagatgttgcttgcttttaaatctctatgtataattttaagtctcgagt 361  Q
    |||||||| | |||||||||||||||||||||| ||| ||| || || |  |||||||| ||||  |||| |||||| ||||||||| | | | | ||      
T  40823849 attctagccataccaaagtctgatatttttggattcaactcctcgtctaacaagatgttacttgtctttagatctctgtgtataattctcaatttggaag 40823948  T
Q  362 ctctatgaagatacattattcctcgagctattccttc 398  Q
    ||||||||||||| |  | ||||||||||||||||||    
T  40823949 ctctatgaagataaagcaatcctcgagctattccttc 40823985  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 104
Target Start/End: Original strand, 40823652 - 40823734
Alignment:
Q  22 aaaacaccaaagctatatacatctgatttctctgagaaaagtccccccattgcatattcaggcggcatataaccactacattt 104  Q
    ||||||||||||||| | ||||||||||||||||| || |||||   ||| ||||||||||| | ||||||||| || |||||    
T  40823652 aaaacaccaaagctaaagacatctgatttctctgaaaacagtccttgcatcgcatattcaggggacatataaccgctgcattt 40823734  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 277 - 341
Target Start/End: Complemental strand, 36366510 - 36366446
Alignment:
Q  277 aagtctgatatttttggaatcatctcatcatcaagtaagatgttgcttgcttttaaatctctatg 341  Q
    ||||||||||| |||||| |||||||  |||||||||  ||||||||||| || | |||||||||    
T  36366510 aagtctgatatctttggattcatctctccatcaagtagaatgttgcttgccttaagatctctatg 36366446  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 273 - 308
Target Start/End: Original strand, 37713838 - 37713873
Alignment:
Q  273 accaaagtctgatatttttggaatcatctcatcatc 308  Q
    ||||||||||||||| ||||||||||||||||||||    
T  37713838 accaaagtctgatatctttggaatcatctcatcatc 37713873  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 259 - 299
Target Start/End: Complemental strand, 20233328 - 20233288
Alignment:
Q  259 acaattctagctaaaccaaagtctgatatttttggaatcat 299  Q
    ||||||||||| | |||||| ||||||||||||||||||||    
T  20233328 acaattctagcaagaccaaaatctgatatttttggaatcat 20233288  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 259 - 299
Target Start/End: Complemental strand, 22127312 - 22127272
Alignment:
Q  259 acaattctagctaaaccaaagtctgatatttttggaatcat 299  Q
    ||||||||||| | |||||| ||||||||||||||||||||    
T  22127312 acaattctagcaagaccaaaatctgatatttttggaatcat 22127272  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 268 - 376
Target Start/End: Original strand, 5488882 - 5488990
Alignment:
Q  268 gctaaaccaaagtctgatatttttggaatcatctcatcatcaagtaagatgttgcttgcttttaaatctctatgtataattttaagtctcgagtctctat 367  Q
    |||||||||||||||| ||| ||||| ||||| ||| ||||||| |  || ||||||| ||| | |||||||||||| ||| | ||| | || |||  ||    
T  5488882 gctaaaccaaagtctgctatctttgggatcatatcaacatcaagaagaatattgcttgttttcatatctctatgtatgattcttagtgtagaatcttgat 5488981  T
Q  368 gaagataca 376  Q
    |||||||||    
T  5488982 gaagataca 5488990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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