View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21321_low_11 (Length: 373)
Name: NF21321_low_11
Description: NF21321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21321_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 18 - 354
Target Start/End: Complemental strand, 28491446 - 28491110
Alignment:
| Q |
18 |
acagagtaggttttgtggtacaccctgattccctagtagtagtaactataacaaagtgaaaaactccagctaccaagaggttaaacagtgaaaatagttt |
117 |
Q |
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| T |
28491446 |
acagagtaggttttgtggtacaccctgattccctagtaatagtaactataacaaagtgaaaaactccagctaccaagaggttaaacagtgaaaatagttt |
28491347 |
T |
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| Q |
118 |
tcatccagccgttagatttgtcaagtggtaactatatatactggtggtcaaagttgttaatttgactccccaattaaatggatcgaatagcgattgatat |
217 |
Q |
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| T |
28491346 |
tcatccggccgttagatttgtcaagtggtaactatatatactggtggtcaaagttgttaatttgactccccaattaaatggatcgaatagcgattgatat |
28491247 |
T |
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| Q |
218 |
ttcattgcatgatgacagacagacagacagcttcatggttttgctgtaacagtaaccgtaaagtgtgtccttgactgcttctaattcaagttaggttgga |
317 |
Q |
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| T |
28491246 |
ttcattgcatgatgacagacagacagacagcttcatggatttgctgtaacagtaactgtaaagtgtgtccttgactgcttctaattcaagttaggttgga |
28491147 |
T |
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| Q |
318 |
tcaatgtcccaaaacgatgcaaattcagttaggacta |
354 |
Q |
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| T |
28491146 |
tcaatgtcccaaaacgatgcaaattcagttaggacta |
28491110 |
T |
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