View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21321_low_12 (Length: 359)
Name: NF21321_low_12
Description: NF21321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21321_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 5 - 341
Target Start/End: Original strand, 21848263 - 21848594
Alignment:
| Q |
5 |
gagtgagaagaatgtgtcaagccttaaggaacgaatgattaggtggaggatgacgggtctacgacnnnnnnnnnnnnntttctaagtgaaagaacgagaa |
104 |
Q |
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| T |
21848263 |
gagtgacaagaatgtgtcaagccttaaggaacgaatgattaggtggaggttgacaggtctacgacaaaaaatggaaaatttctaagtgaaagaacgagaa |
21848362 |
T |
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| Q |
105 |
acaagatgaaatatgtttgcccgttaatttgtacaaaaattatttagtggtatggaagttgattgatgaagtcaaaaatttaagatgctaagacatgaag |
204 |
Q |
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| T |
21848363 |
acaagatgaaatatgtttgcccgtgaatttgtacaaaaattatttagtggtatggaagttgattgatgaagtgaaaaatttaagatgctaagacatgaag |
21848462 |
T |
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| Q |
205 |
taagctttaggattaatgtctggaaggatttataagatggatgttgttgaagtatgactttaaaggtgaaacaatgtattgtattggtaggcattgtgta |
304 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |||||||| |
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| T |
21848463 |
taaactttaggattaatgtctggaaggatttataagatggatgttgttgaagtatgactttaaaggtgaaacaa-----tgtattagtaaatattgtgta |
21848557 |
T |
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| Q |
305 |
tgacatgagttgtgacattttgggccaatgtcacaag |
341 |
Q |
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| T |
21848558 |
tgacatgagttgtgacattttgggccaatgtcacaag |
21848594 |
T |
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