View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21321_low_14 (Length: 341)
Name: NF21321_low_14
Description: NF21321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21321_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 18 - 328
Target Start/End: Complemental strand, 33769704 - 33769394
Alignment:
| Q |
18 |
aatctgtcatgtgcttacttcacatacatatcatgcatgatcagatattgcgtctaataccagtaggaaaaggaaacaaccataatagaatctatttttg |
117 |
Q |
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| T |
33769704 |
aatctgtcatgtgcttacttcacatatatatcatgcatgatcagatattgcgtctaataccagtaggaaaaggaaacaaccataatagaatctatttttg |
33769605 |
T |
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| Q |
118 |
tactcattactaacttatgatgtatttacttcacatatagttctggttttacaacatgattcctgatatatgtatatatgggaataatgagattcatttg |
217 |
Q |
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| T |
33769604 |
tactccttactaacttatgatgtatttacttcacatatagttctggttttacaacatgattcctgatatatgtatatatgggaataatgagattcatttg |
33769505 |
T |
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| Q |
218 |
gttccaattctcctcttctcattcgaactatgattgtattcaaaatttcccaatcacatacaaaacaaaatcgccaggatttgcaatgacataacgctga |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
33769504 |
gttccaattctcctcttctcattcgaactatgattgtattcaaaatttcccaatcacatacaaaacaaaatcgccaggatttgcaatgacataatgctga |
33769405 |
T |
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| Q |
318 |
ttctgatagaa |
328 |
Q |
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||||||||||| |
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| T |
33769404 |
ttctgatagaa |
33769394 |
T |
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