View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21321_low_16 (Length: 338)
Name: NF21321_low_16
Description: NF21321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21321_low_16 |
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| [»] chr1 (4 HSPs) |
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| [»] scaffold0312 (2 HSPs) |
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| [»] scaffold1626 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 309; Significance: 1e-174; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 18 - 338
Target Start/End: Complemental strand, 440239 - 439919
Alignment:
| Q |
18 |
gaagtgatggaggtctttattttaagatgaattaggtttagactaactcgaatattgtttgctatgttatataacagatgatgataatagactctaaatt |
117 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
440239 |
gaagtgatggaggtctttattttaagatgaataaggtttagactaactcgaatattgtttgctatgttatataacagatgatgataatagactctaaatt |
440140 |
T |
|
| Q |
118 |
accttatccaagtggaactgctactggtgttcttattaatggattccatactcctaaaggaaatgtcatggccaagtatgattatgaaacaaattatgtt |
217 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
440139 |
accttatccaagtggaactgctacaggtgttcttattaatggattccatactcctaaaggaaatgtcatggccaagtatgattatgaaacaaattatgtt |
440040 |
T |
|
| Q |
218 |
tgtgctatttgtattctatatttgttatttcaagatgaaaacatataaaactattttggcatctttcacaggaagcaggttaagggtttcacgcaattct |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
440039 |
tgtgctatttgtattctatatttgttatttcaagatgaaaacatataaaactaatttggcatctttcacaggaagcaggttaagggtttcacgcaattct |
439940 |
T |
|
| Q |
318 |
tctcattcagtttgctttggt |
338 |
Q |
| |
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||||||||||||||||||||| |
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| T |
439939 |
tctcattcagtttgctttggt |
439919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 38 - 338
Target Start/End: Complemental strand, 409881 - 409583
Alignment:
| Q |
38 |
tttaagatgaattaggtttagactaactcgaatattgtttgctatgttatataacagatgatgataatagactctaaattaccttatccaagtggaactg |
137 |
Q |
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||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
409881 |
tttaagatgaattgggtttagactaactggaatattgtttgctatgttatttaacagatgatgataatagactctaaattaccttatccaagtggaactg |
409782 |
T |
|
| Q |
138 |
ctactggtgttcttattaatggattccatactcctaaaggaaatgtcatggccaagtatgattatgaaacaaattatgtttgtgctatttgtattctata |
237 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || |||||| | || || |
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| T |
409781 |
ctacaggtgttcttattaatggattccatactcctaaaggaaatgtcatggccaagtatgattatgaaaccaattatgtttatgttatttgaa--ctcta |
409684 |
T |
|
| Q |
238 |
tttgttatttcaagatgaaaacatataaaactattttggcatctttcacaggaagcaggttaagggtttcacgcaattcttctcattcagtttgctttgg |
337 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
409683 |
tttgttatttcaagatgaaaacatataaaactaatttggcatctttcacaggaagcaggttaagggtttcatgcaattcttctcattcagtttgctttgg |
409584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 17 - 338
Target Start/End: Complemental strand, 402654 - 402336
Alignment:
| Q |
17 |
agaagtgatggaggtctttattttaagatgaattaggtttagactaactcgaatattgtttgctatgttatataacagatgatgataatagactctaaat |
116 |
Q |
| |
|
|||||||||| | || ||||||| |||||||||| ||||| ||||| || ||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
402654 |
agaagtgatgaaagtttttattt-aagatgaattgactttagggtaacttgagtattgtttgctatgttaaataacagatgatgataatagactctaaat |
402556 |
T |
|
| Q |
117 |
taccttatccaagtggaactgctactggtgttcttattaatggattccatactcctaaaggaaatgtcatggccaagtatgattatgaaacaaattatgt |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
402555 |
taccttatccaagtggaactgctactggtgttcttattaatggattccatactcctaaaggaaatgtcatggccaagtatgattatgaaaccaattatgt |
402456 |
T |
|
| Q |
217 |
ttgtgctatttgtattctatatttgttatttcaagatgaaaacatataaaactattttggcatctttcacaggaagcaggttaagggtttcacgcaattc |
316 |
Q |
| |
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|| || |||||| | || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
402455 |
ttatgttatttgaa--ctctatttgttatttcaagatgaaaacatataaaactaatttggcatctttcacaggaagcaggttaagggtttcacgcggttc |
402358 |
T |
|
| Q |
317 |
ttctcattcagtttgctttggt |
338 |
Q |
| |
|
||||| ||||||||||| |||| |
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| T |
402357 |
ttctcgttcagtttgctctggt |
402336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 72 - 338
Target Start/End: Complemental strand, 427649 - 427385
Alignment:
| Q |
72 |
ttgtttgctatgttatataacagatgatgataatagactctaaattaccttatccaagtggaactgctactggtgttcttattaatggattccatactcc |
171 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
427649 |
ttgtttgctatgttatacaacagatgatgataatagactctaaattaccttatccaagtggaactgctacaggtgttcttattaatggattccatactcc |
427550 |
T |
|
| Q |
172 |
taaaggaaatgtcatggccaagtatgattatgaaacaaattatgtttgtgctatttgtattctatatttgttatttcaagatgaaaacatataaaactat |
271 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| || ||||||| || |||||||| || ||||||||||||||||||||||||||||||||||| |
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| T |
427549 |
taaaggaaatgtcatggccaagtatggttatgaaaccaactatgtttatgttatttgta--ctctatttgttatttcaagatgaaaacatataaaactaa |
427452 |
T |
|
| Q |
272 |
tttggcatctttcacaggaagcaggttaagggtttcacgcaattcttctcattcagtttgctttggt |
338 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
427451 |
attggtatctttcacaggaagcaggttaagggtttcacgcggttcttctcattcagtttgctttggt |
427385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0312 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: scaffold0312
Description:
Target: scaffold0312; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 72 - 338
Target Start/End: Original strand, 2901 - 3165
Alignment:
| Q |
72 |
ttgtttgctatgttatataacagatgatgataatagactctaaattaccttatccaagtggaactgctactggtgttcttattaatggattccatactcc |
171 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
2901 |
ttgtttgctatgttatacaacagatgatgataatagactctaaattaccttatccaagtggaactgctacaggtgttcttattaatggattccatactcc |
3000 |
T |
|
| Q |
172 |
taaaggaaatgtcatggccaagtatgattatgaaacaaattatgtttgtgctatttgtattctatatttgttatttcaagatgaaaacatataaaactat |
271 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| || ||||||| || |||||||| || ||||||||||||||||||||||||||||||||||| |
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|
| T |
3001 |
taaaggaaatgtcatggccaagtatggttatgaaaccaactatgtttatgttatttgta--ctctatttgttatttcaagatgaaaacatataaaactaa |
3098 |
T |
|
| Q |
272 |
tttggcatctttcacaggaagcaggttaagggtttcacgcaattcttctcattcagtttgctttggt |
338 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
3099 |
attggtatctttcacaggaagcaggttaagggtttcacgcggttcttctcattcagtttgctttggt |
3165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0312; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 38 - 141
Target Start/End: Original strand, 20689 - 20792
Alignment:
| Q |
38 |
tttaagatgaattaggtttagactaactcgaatattgtttgctatgttatataacagatgatgataatagactctaaattaccttatccaagtggaactg |
137 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20689 |
tttaagatgaattgggtttagactaactggaatattgtttgctatgttatttaacagatgatgataatagactctaaattaccttatccaagtggaactg |
20788 |
T |
|
| Q |
138 |
ctac |
141 |
Q |
| |
|
|||| |
|
|
| T |
20789 |
ctac |
20792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1626 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: scaffold1626
Description:
Target: scaffold1626; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 143 - 338
Target Start/End: Original strand, 1 - 194
Alignment:
| Q |
143 |
ggtgttcttattaatggattccatactcctaaaggaaatgtcatggccaagtatgattatgaaacaaattatgtttgtgctatttgtattctatatttgt |
242 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || |||||| | ||||| |||| |
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|
| T |
1 |
ggtgttcttattaatggattccatactcctaaaggaaatgtcatggccaagtatgattatgaaaccaattatgtttatgttatttgaactctat--ttgt |
98 |
T |
|
| Q |
243 |
tatttcaagatgaaaacatataaaactattttggcatctttcacaggaagcaggttaagggtttcacgcaattcttctcattcagtttgctttggt |
338 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
99 |
tatttcaagatgaaaacatataaaactaatttggcatctttcacaggaagcaggttaagggtttcaagcaattcttctcattcagtttgctttggt |
194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 89 - 197
Target Start/End: Original strand, 42039845 - 42039953
Alignment:
| Q |
89 |
taacagatgatgataatagactctaaattaccttatccaagtggaactgctactggtgttcttattaatggattccatactcctaaaggaaatgtcatgg |
188 |
Q |
| |
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|||||||| ||||| ||||||| |||||| |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |||| |||| |
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| T |
42039845 |
taacagataatgattatagactacaaattaacttatccaagtggaactgctactgctgttctcattaatggattccatactcctaaaggagatgtgatgg |
42039944 |
T |
|
| Q |
189 |
ccaagtatg |
197 |
Q |
| |
|
||||||||| |
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|
| T |
42039945 |
ccaagtatg |
42039953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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