View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21321_low_17 (Length: 332)

Name: NF21321_low_17
Description: NF21321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21321_low_17
NF21321_low_17
[»] scaffold0006 (4 HSPs)
scaffold0006 (1-322)||(130931-131249)
scaffold0006 (51-96)||(194825-194870)
scaffold0006 (51-99)||(125322-125370)
scaffold0006 (219-248)||(125448-125477)
[»] chr1 (3 HSPs)
chr1 (1-322)||(13602274-13602592)
chr1 (278-321)||(23833625-23833668)
chr1 (67-101)||(13487572-13487606)
[»] chr7 (2 HSPs)
chr7 (285-321)||(4800005-4800041)
chr7 (272-309)||(4800047-4800084)
[»] chr6 (2 HSPs)
chr6 (35-99)||(21770132-21770196)
chr6 (219-248)||(21770274-21770303)
[»] scaffold0291 (1 HSPs)
scaffold0291 (219-258)||(17805-17845)


Alignment Details
Target: scaffold0006 (Bit Score: 284; Significance: 1e-159; HSPs: 4)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 130931 - 131249
Alignment:
Q  1 cttcagaaaaacaataaattgactacttccatgttcttttgtactttctcacattgtgcagaaccttctaatgataacttcctgctaaaagtgacaataa 100  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  130931 cttcagaaaaacaataaattgactagttccatgttcttttgtactttttcacattgtgcagaacctgctaatgataacttcctgctaaaagcgacaataa 131030  T
Q  101 gaactcaacaacaggacaaatatagggaatgtttgtgattcctttttgcacaagcattttcatgccattaaacaatattgatgatcggtttctcagtttt 200  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||    
T  131031 gaactgaacaacaggacaaatatagggaatgtttgtgattcctttttgcacaagcattttcatgccattaaac---attgatgatcggtttctcagtttt 131127  T
Q  201 tctcccaatcttatctaaatgattatacaacctatggactctcacaaactatgagcacatataggttattagctgactaggtgcccttgctcaacacaac 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  131128 tctcccaatcttatctaaatgattatacaacctatggactctcacaaactatgagcacatataggttattagctgactaggtgcccttgctcaacacaac 131227  T
Q  301 cttcaagtattcgctctctgtg 322  Q
    |||||||||||| |||||||||    
T  131228 cttcaagtattcactctctgtg 131249  T

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Target: scaffold0006; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 51 - 96
Target Start/End: Original strand, 194825 - 194870
Alignment:
Q  51 acattgtgcagaaccttctaatgataacttcctgctaaaagtgaca 96  Q
    ||||||| |||||||| |||||||||||||||||||||||||||||    
T  194825 acattgtacagaacctgctaatgataacttcctgctaaaagtgaca 194870  T

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Target: scaffold0006; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 51 - 99
Target Start/End: Original strand, 125322 - 125370
Alignment:
Q  51 acattgtgcagaaccttctaatgataacttcctgctaaaagtgacaata 99  Q
    ||||||| || ||||| ||||||||||||||||||||||||||||||||    
T  125322 acattgtacaaaacctactaatgataacttcctgctaaaagtgacaata 125370  T

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Target: scaffold0006; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 248
Target Start/End: Original strand, 125448 - 125477
Alignment:
Q  219 atgattatacaacctatggactctcacaaa 248  Q
    ||||||||||||||||||||||||||||||    
T  125448 atgattatacaacctatggactctcacaaa 125477  T

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Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 13602274 - 13602592
Alignment:
Q  1 cttcagaaaaacaataaattgactacttccatgttcttttgtactttctcacattgtgcagaaccttctaatgataacttcctgctaaaagtgacaataa 100  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  13602274 cttcagaaaaacaataaattgactagttccatgttcttttgtactttttcacattgtgcagaacctgctaatgataacttcctgctaaaagcgacaataa 13602373  T
Q  101 gaactcaacaacaggacaaatatagggaatgtttgtgattcctttttgcacaagcattttcatgccattaaacaatattgatgatcggtttctcagtttt 200  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||    
T  13602374 gaactgaacaacaggacaaatatagggaatgtttgtgattcctttttgcacaagcattttcatgccattaaac---attgatgatcggtttctcagtttt 13602470  T
Q  201 tctcccaatcttatctaaatgattatacaacctatggactctcacaaactatgagcacatataggttattagctgactaggtgcccttgctcaacacaac 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13602471 tctcccaatcttatctaaatgattatacaacctatggactctcacaaactatgagcacatataggttattagctgactaggtgcccttgctcaacacaac 13602570  T
Q  301 cttcaagtattcgctctctgtg 322  Q
    |||||||||||| |||||||||    
T  13602571 cttcaagtattcactctctgtg 13602592  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 278 - 321
Target Start/End: Complemental strand, 23833668 - 23833625
Alignment:
Q  278 taggtgcccttgctcaacacaaccttcaagtattcgctctctgt 321  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||    
T  23833668 taggttcccttgctcaacacaaccttcaagtattcactctctgt 23833625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 101
Target Start/End: Original strand, 13487572 - 13487606
Alignment:
Q  67 tctaatgataacttcctgctaaaagtgacaataag 101  Q
    |||||||||||||||||| ||||||||||||||||    
T  13487572 tctaatgataacttcctgttaaaagtgacaataag 13487606  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 285 - 321
Target Start/End: Complemental strand, 4800041 - 4800005
Alignment:
Q  285 ccttgctcaacacaaccttcaagtattcgctctctgt 321  Q
    |||||||||||||||||||||||||||| ||||||||    
T  4800041 ccttgctcaacacaaccttcaagtattcactctctgt 4800005  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 309
Target Start/End: Complemental strand, 4800084 - 4800047
Alignment:
Q  272 gctgactaggtgcccttgctcaacacaaccttcaagta 309  Q
    ||||| ||||| ||||||||||||||||||||||||||    
T  4800084 gctgattaggttcccttgctcaacacaaccttcaagta 4800047  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 99
Target Start/End: Original strand, 21770132 - 21770196
Alignment:
Q  35 tcttttgtactttctcacattgtgcagaaccttctaatgataacttcctgctaaaagtgacaata 99  Q
    |||||||||| || | ||||||| |||||||| ||||||||||||||||| ||| ||||| ||||    
T  21770132 tcttttgtacgtttttacattgtacagaacctgctaatgataacttcctggtaatagtgagaata 21770196  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 248
Target Start/End: Original strand, 21770274 - 21770303
Alignment:
Q  219 atgattatacaacctatggactctcacaaa 248  Q
    ||||||||||||||||||||||||||||||    
T  21770274 atgattatacaacctatggactctcacaaa 21770303  T

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Target: scaffold0291 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 258
Target Start/End: Complemental strand, 17845 - 17805
Alignment:
Q  219 atgattatacaacctatggactctc-acaaactatgagcac 258  Q
    |||||||||||||||||||||| || |||||||||||||||    
T  17845 atgattatacaacctatggactgtcaacaaactatgagcac 17805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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