View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21321_low_18 (Length: 297)
Name: NF21321_low_18
Description: NF21321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21321_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 261; Significance: 1e-145; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 18 - 290
Target Start/End: Complemental strand, 32628054 - 32627782
Alignment:
| Q |
18 |
ataaccagcatgtacaacaacacactctccaaaagcttgacaattgcagacttaggttgctcttctggatcaaacactttgttggtgatcttagatatta |
117 |
Q |
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| T |
32628054 |
ataaccagcatgtacaacaacacactctccaaaagcttgacaattgcagacttaggttgctcttctggatcaaacactttgttggtgatcttagatatta |
32627955 |
T |
|
| Q |
118 |
tcaaagttgtggaaaagctttgtcgaaaacttaatcataaatctcccgaatatatgatatttttgaacgatctaccgggaaatgacttcaacaccatatt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
32627954 |
tcaaagttgtggaaaagctttgtcgaaaacttaatcataaatctcccgaatatatgatatatttgaacgatctaccgggaaatgacttcaacaccatatt |
32627855 |
T |
|
| Q |
218 |
taagtcccttgacattttcaaagaaaaactacttgaagaaatggggactgaaatgggtccatgcttcttctca |
290 |
Q |
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|| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
32627854 |
tacgtcccttgacattttcaaagaaaaactacttgatgaaatggggactgaaatgggtccatgcttcttctca |
32627782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 26 - 249
Target Start/End: Complemental strand, 32704274 - 32704047
Alignment:
| Q |
26 |
catgtacaacaacacactctccaaaagcttgacaattgcagacttaggttgctcttctggatcaaacactttgttggtgatcttagatattatcaaagtt |
125 |
Q |
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||||||||| || |||||| ||| ||||||| |||||||||| || |||||||||| |||| ||||||||||||||| ||||| ||||| |||||| ||| |
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| T |
32704274 |
catgtacaataaaacactccccataagcttggcaattgcagatttgggttgctcttatggaccaaacactttgttggcgatctcagatactatcaaggtt |
32704175 |
T |
|
| Q |
126 |
gtggaaaagctttgtcgaaaacttaatcataaatctcccgaatatat----gatatttttgaacgatctaccgggaaatgacttcaacaccatatttaag |
221 |
Q |
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| T |
32704174 |
gtggaaaagatttgtcgagagcttaatcataaatctcctgaatatatataaggtctttttgaacgatctaccagggaacgacttcaacaatgtatttagg |
32704075 |
T |
|
| Q |
222 |
tcccttgacattttcaaagaaaaactac |
249 |
Q |
| |
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||||| |||| ||||||||||| |||| |
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| T |
32704074 |
tccctcgacacgttcaaagaaaatctac |
32704047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 58 - 231
Target Start/End: Complemental strand, 7298173 - 7298000
Alignment:
| Q |
58 |
caattgcagacttaggttgctcttctggatcaaacactttgttggtgatcttagatattatcaaagttgtggaaaagctttgtcgaaaacttaatcataa |
157 |
Q |
| |
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|||||||||| |||||||| ||||||||| ||||||||||||| ||| | | ||||||||||| |||||||| |||||||| | | || | || ||| |
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| T |
7298173 |
caattgcagatttaggttgttcttctggaccaaacactttgtttgtggtatcagatattatcatggttgtggagaagctttgccaacaattgaaccattc |
7298074 |
T |
|
| Q |
158 |
atctcccgaatatatgatatttttgaacgatctaccgggaaatgacttcaacaccatatttaagtcccttgaca |
231 |
Q |
| |
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||||||||| || | ||||||||| || ||| | | |||||||||||||||| |||||||||||| ||||||| |
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|
| T |
7298073 |
atctcccgagtacaagatattttttaatgatgtttctggaaatgacttcaacaacatatttaagtcacttgaca |
7298000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 58 - 208
Target Start/End: Complemental strand, 32709952 - 32709802
Alignment:
| Q |
58 |
caattgcagacttaggttgctcttctggatcaaacactttgttggtgatcttagatattatcaaagttgtggaaaagctttgtcgaaaacttaatcataa |
157 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||||||||||||||| | | ||| ||||||| || |||||||||||||||||| | | |||||| | |
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| T |
32709952 |
caattgcagacttgggttgctcttctgggccaaacactttgttggtggtatcagaatttatcaaggtcgtggaaaagctttgtcgagagttgaatcatga |
32709853 |
T |
|
| Q |
158 |
atctcccgaatatatgatatttttgaacgatctaccgggaaatgacttcaa |
208 |
Q |
| |
|
|||||||||||| | | | || ||||||||| | ||||| || |||||||| |
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| T |
32709852 |
atctcccgaatacaaggtcttcttgaacgatttgccgggtaacgacttcaa |
32709802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 259
Target Start/End: Complemental strand, 7293599 - 7293498
Alignment:
| Q |
158 |
atctcccgaatatatgatatttttgaacgatctaccgggaaatgacttcaacaccatatttaagtcccttgacattttcaaagaaaaactacttgaagaa |
257 |
Q |
| |
|
|||||||||||| | ||| ||||| |||||||| | || ||||||||||||| ||| |||||||| ||||| | || ||| | ||||||||||| ||| |
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| T |
7293599 |
atctcccgaatacaagatcttttttaacgatctttcagggaatgacttcaacaacatttttaagtcacttgatagctttaaacataaactacttgatgaa |
7293500 |
T |
|
| Q |
258 |
at |
259 |
Q |
| |
|
|| |
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|
| T |
7293499 |
at |
7293498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 124; Significance: 8e-64; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 50 - 289
Target Start/End: Complemental strand, 5811667 - 5811428
Alignment:
| Q |
50 |
aagcttgacaattgcagacttaggttgctcttctggatcaaacactttgttggtgatcttagatattatcaaagttgtggaaaagctttgtcgaaaactt |
149 |
Q |
| |
|
||||||| ||||||||||||| |||||||||| |||| |||||||||| |||||||||| || |||||||| ||||| ||||||||||||||| ||||| |
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| T |
5811667 |
aagcttggcaattgcagacttgggttgctcttttggaccaaacactttcttggtgatctctgaaattatcaaggttgttgaaaagctttgtcgagaactt |
5811568 |
T |
|
| Q |
150 |
aatcataaatctcccgaatatatgatatttttgaacgatctaccgggaaatgacttcaacaccatatttaagtcccttgacattttcaaagaaaaactac |
249 |
Q |
| |
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|||||||||||||||||||||| | |||||||||||||||||||||||||| |||||| | |||||| ||||||||||| |||||||||||||||| |
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| T |
5811567 |
aatcataaatctcccgaatataaagtctttttgaacgatctaccgggaaatgatttcaacgacgtatttatgtcccttgacaccttcaaagaaaaactac |
5811468 |
T |
|
| Q |
250 |
ttgaagaaatggggactgaaatgggtccatgcttcttctc |
289 |
Q |
| |
|
| | ||||||| |||||||||||||| |||| |||||| |
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| T |
5811467 |
gtaatgaaatggaaactgaaatgggtccttgctacttctc |
5811428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 35 - 261
Target Start/End: Complemental strand, 27737001 - 27736775
Alignment:
| Q |
35 |
caacacactctccaaaagcttgacaattgcagacttaggttgctcttctggatcaaacactttgttggtgatcttagatattatcaaagttgtggaaaag |
134 |
Q |
| |
|
||||||||| ||| ||||||| ||||||||||||| |||||||||| ||| |||||||| |||||||||| | ||| |||||||||| ||||||||| |
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| T |
27737001 |
caacacacttcccagaagcttggcaattgcagacttgggttgctcttttgggccaaacactatgttggtgatatcagaaattatcaaaggtgtggaaaaa |
27736902 |
T |
|
| Q |
135 |
ctttgtcgaaaacttaatcataaatctcccgaatatatgatatttttgaacgatctaccgggaaatgacttcaacaccatatttaagtcccttgacattt |
234 |
Q |
| |
|
||||||| | | | ||||||||||||| ||||||| |||||||||| ||||||||||||||||||||||||| | |||| ||||||||||||| | |
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|
| T |
27736901 |
ctttgtcaagtgcatcatcataaatctcctgaatataaagtatttttgaatgatctaccgggaaatgacttcaacaacgtattcaagtcccttgacacct |
27736802 |
T |
|
| Q |
235 |
tcaaagaaaaactacttgaagaaatgg |
261 |
Q |
| |
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||||||| ||||||| ||| ||||||| |
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| T |
27736801 |
tcaaagagaaactacgtgatgaaatgg |
27736775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 81; Significance: 4e-38; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 61 - 244
Target Start/End: Original strand, 20115800 - 20115983
Alignment:
| Q |
61 |
ttgcagacttaggttgctcttctggatcaaacactttgttggtgatcttagatattatcaaagttgtggaaaagctttgtcgaaaacttaatcataaatc |
160 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||||| ||||||||||||| ||| |||||||| |||||||||||||||||| | || | |||||| |||| |
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|
| T |
20115800 |
ttgcagacttaggttgctcttcaggaccaaacaccttgttggtgatctcagaaattatcaaggttgtggaaaagctttgtatagaattgaatcatgaatc |
20115899 |
T |
|
| Q |
161 |
tcccgaatat-atgatatttttgaacgatctaccgggaaatgacttcaacaccatatttaagtcccttgacattttcaaagaaaa |
244 |
Q |
| |
|
||| |||||| ||| | | ||||||||||||| | ||||| ||||||||| |||||||||||||||||||| ||||||||||| |
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|
| T |
20115900 |
tcctgaatatgatg-tctctttgaacgatctatccggaaacgacttcaacggcatatttaagtcccttgacaccttcaaagaaaa |
20115983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 61 - 247
Target Start/End: Complemental strand, 21943859 - 21943673
Alignment:
| Q |
61 |
ttgcagacttaggttgctcttctggatcaaacactttgttggtgatcttagatattatcaaagttgtggaaaagctttgtcgaaaacttaatcataaatc |
160 |
Q |
| |
|
|||||||||| ||||| ||||||||| ||| |||||||||||||||| || ||||| || ||||||||||||||||||| | | | |||||| |||| |
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|
| T |
21943859 |
ttgcagacttgggttgttcttctggactaaatactttgttggtgatctcggagattataaatgttgtggaaaagctttgtcaagagttgaatcatgaatc |
21943760 |
T |
|
| Q |
161 |
tcccgaatatatgatatttttgaacgatctaccgggaaatgacttcaacaccatatttaagtcccttgacattttcaaagaaaaact |
247 |
Q |
| |
|
||||||||||| | ||||||||||||||||||| ||||| || ||||||| | |||||| ||||||||| | |||||||||||||| |
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|
| T |
21943759 |
tcccgaatataaggtatttttgaacgatctacccggaaacgatttcaacaacgtatttaggtcccttgagaccttcaaagaaaaact |
21943673 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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