View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21321_low_2 (Length: 647)

Name: NF21321_low_2
Description: NF21321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21321_low_2
NF21321_low_2
[»] chr5 (27 HSPs)
chr5 (198-490)||(4925098-4925384)
chr5 (385-562)||(39060156-39060333)
chr5 (383-551)||(34769528-34769696)
chr5 (182-381)||(35205743-35205943)
chr5 (203-381)||(35211228-35211407)
chr5 (428-551)||(9959321-9959444)
chr5 (397-525)||(23089298-23089426)
chr5 (440-551)||(37902400-37902512)
chr5 (427-549)||(10523804-10523926)
chr5 (489-549)||(4924779-4924839)
chr5 (448-549)||(35211935-35212036)
chr5 (398-530)||(14593856-14593988)
chr5 (429-549)||(34383704-34383826)
chr5 (460-549)||(35205123-35205212)
chr5 (460-548)||(14947657-14947745)
chr5 (427-526)||(14913456-14913555)
chr5 (429-538)||(23090679-23090788)
chr5 (387-455)||(35205244-35205312)
chr5 (387-455)||(35211839-35211907)
chr5 (429-490)||(16280927-16280988)
chr5 (383-447)||(14947804-14947868)
chr5 (482-549)||(38698221-38698288)
chr5 (383-477)||(29812023-29812117)
chr5 (407-448)||(16328083-16328124)
chr5 (489-534)||(35205071-35205116)
chr5 (489-534)||(35212043-35212088)
chr5 (430-490)||(39030023-39030083)
[»] chr2 (25 HSPs)
chr2 (321-549)||(39375605-39375833)
chr2 (383-551)||(32914418-32914586)
chr2 (383-548)||(6858965-6859130)
chr2 (385-549)||(33386646-33386805)
chr2 (407-549)||(14657495-14657636)
chr2 (182-269)||(39375513-39375600)
chr2 (383-549)||(9104543-9104709)
chr2 (427-527)||(18565743-18565843)
chr2 (429-552)||(37069906-37070030)
chr2 (397-492)||(8322145-8322240)
chr2 (460-549)||(7395461-7395550)
chr2 (430-551)||(3739492-3739613)
chr2 (409-525)||(3739849-3739965)
chr2 (397-549)||(40095764-40095916)
chr2 (398-524)||(5147101-5147226)
chr2 (435-525)||(4897252-4897342)
chr2 (435-525)||(4944646-4944736)
chr2 (11-76)||(34414297-34414362)
chr2 (475-551)||(37258125-37258201)
chr2 (398-542)||(38609893-38610036)
chr2 (436-549)||(43490502-43490616)
chr2 (459-549)||(29794378-29794468)
chr2 (391-492)||(29984913-29985014)
chr2 (398-450)||(7394958-7395010)
chr2 (397-479)||(3384722-3384804)
[»] chr1 (24 HSPs)
chr1 (182-452)||(7386351-7386610)
chr1 (384-551)||(23570967-23571134)
chr1 (355-492)||(19322751-19322888)
chr1 (383-549)||(37457596-37457762)
chr1 (387-549)||(7900128-7900290)
chr1 (387-549)||(19993339-19993501)
chr1 (383-549)||(43496370-43496536)
chr1 (381-549)||(46823590-46823757)
chr1 (383-551)||(1035715-1035883)
chr1 (397-551)||(50428451-50428605)
chr1 (381-551)||(7167954-7168124)
chr1 (383-525)||(51613251-51613392)
chr1 (401-552)||(47394339-47394492)
chr1 (202-381)||(19991215-19991395)
chr1 (407-552)||(16679879-16680024)
chr1 (429-541)||(10574368-10574480)
chr1 (380-491)||(26707081-26707191)
chr1 (201-285)||(19322649-19322733)
chr1 (383-497)||(27641543-27641657)
chr1 (16-99)||(29081597-29081680)
chr1 (399-549)||(29058575-29058727)
chr1 (489-549)||(7386291-7386351)
chr1 (435-551)||(30717402-30717518)
chr1 (487-551)||(26723252-26723317)
[»] chr4 (25 HSPs)
chr4 (383-551)||(52326968-52327136)
chr4 (382-549)||(779867-780034)
chr4 (387-549)||(23559987-23560149)
chr4 (385-549)||(5415149-5415313)
chr4 (381-549)||(2681065-2681232)
chr4 (387-549)||(48262962-48263128)
chr4 (397-549)||(55875815-55875967)
chr4 (387-549)||(9268304-9268465)
chr4 (383-542)||(7907367-7907523)
chr4 (383-551)||(41377341-41377509)
chr4 (204-335)||(23563558-23563689)
chr4 (397-551)||(55875967-55876121)
chr4 (394-551)||(46381987-46382144)
chr4 (203-307)||(48265287-48265391)
chr4 (427-542)||(2714202-2714317)
chr4 (402-549)||(38567945-38568092)
chr4 (385-551)||(17476171-17476337)
chr4 (437-549)||(30875381-30875493)
chr4 (384-455)||(4974580-4974651)
chr4 (435-549)||(19485791-19485908)
chr4 (409-549)||(30052355-30052496)
chr4 (460-538)||(43264438-43264516)
chr4 (430-551)||(43354935-43355055)
chr4 (409-510)||(34388812-34388913)
chr4 (383-455)||(17712591-17712662)
[»] scaffold0015 (1 HSPs)
scaffold0015 (385-551)||(56549-56715)
[»] chr3 (25 HSPs)
chr3 (400-549)||(15877730-15877879)
chr3 (387-551)||(53464264-53464428)
chr3 (387-549)||(52313856-52314018)
chr3 (387-526)||(35424128-35424267)
chr3 (383-541)||(35496088-35496246)
chr3 (397-531)||(49644337-49644471)
chr3 (387-536)||(1995562-1995711)
chr3 (397-542)||(36177187-36177332)
chr3 (175-381)||(53464858-53465066)
chr3 (182-381)||(52314448-52314649)
chr3 (385-492)||(11467230-11467337)
chr3 (381-523)||(40793171-40793312)
chr3 (461-549)||(7352575-7352663)
chr3 (397-520)||(28939675-28939798)
chr3 (398-551)||(29096078-29096232)
chr3 (392-520)||(35846158-35846284)
chr3 (413-525)||(45266862-45266975)
chr3 (398-541)||(41031109-41031252)
chr3 (407-519)||(49786945-49787057)
chr3 (383-474)||(7352079-7352170)
chr3 (409-497)||(14898445-14898533)
chr3 (487-549)||(11466752-11466814)
chr3 (426-490)||(42486094-42486158)
chr3 (407-544)||(4489830-4489967)
chr3 (407-492)||(28999388-28999473)
[»] chr7 (23 HSPs)
chr7 (383-549)||(48252847-48253013)
chr7 (407-549)||(44396371-44396513)
chr7 (383-551)||(49080736-49080903)
chr7 (401-548)||(36725768-36725915)
chr7 (383-542)||(32485437-32485587)
chr7 (398-539)||(49081212-49081352)
chr7 (399-518)||(43692526-43692645)
chr7 (427-520)||(8404748-8404841)
chr7 (383-520)||(43598785-43598922)
chr7 (411-503)||(8099641-8099733)
chr7 (401-492)||(38994818-38994909)
chr7 (398-549)||(38346378-38346530)
chr7 (381-497)||(40160299-40160415)
chr7 (406-549)||(29681381-29681524)
chr7 (416-490)||(23869931-23870005)
chr7 (430-519)||(22790435-22790524)
chr7 (424-491)||(12879285-12879352)
chr7 (477-552)||(23772818-23772892)
chr7 (398-497)||(36118058-36118156)
chr7 (460-551)||(46700889-46700980)
chr7 (460-538)||(41159349-41159427)
chr7 (409-497)||(35034334-35034421)
chr7 (399-455)||(41159463-41159519)
[»] chr8 (17 HSPs)
chr8 (387-548)||(40278928-40279089)
chr8 (383-549)||(18226959-18227125)
chr8 (381-542)||(9682318-9682478)
chr8 (381-549)||(1156230-1156398)
chr8 (385-547)||(11425461-11425622)
chr8 (381-549)||(17312810-17312977)
chr8 (383-549)||(35158845-35159011)
chr8 (549-623)||(41488457-41488531)
chr8 (409-549)||(37479177-37479317)
chr8 (11-182)||(41488529-41488703)
chr8 (180-381)||(40278490-40278684)
chr8 (414-520)||(27594257-27594363)
chr8 (399-549)||(45251430-45251579)
chr8 (397-488)||(5191320-5191411)
chr8 (460-537)||(16577394-16577471)
chr8 (427-492)||(40713778-40713843)
chr8 (435-489)||(34954327-34954380)
[»] chr6 (11 HSPs)
chr6 (395-547)||(2844107-2844258)
chr6 (397-549)||(10682482-10682633)
chr6 (449-526)||(30775346-30775423)
chr6 (384-551)||(19789200-19789367)
chr6 (384-523)||(19763539-19763677)
chr6 (438-520)||(13685396-13685478)
chr6 (383-447)||(30775611-30775675)
chr6 (394-497)||(34427048-34427151)
chr6 (407-475)||(6313994-6314059)
chr6 (16-97)||(20408361-20408442)
chr6 (397-497)||(30349201-30349301)
[»] scaffold0110 (2 HSPs)
scaffold0110 (398-549)||(13773-13925)
scaffold0110 (398-549)||(21510-21662)
[»] scaffold0867 (1 HSPs)
scaffold0867 (468-549)||(3546-3627)


Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-112; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 198 - 490
Target Start/End: Complemental strand, 4925384 - 4925098
Alignment:
Q  198 ctgtccatatgggtagtatcacactaaccaatgctcttgtgtcataatatcatggataattggctttggaatagagtagtgaaactatacatggtagcaa 297  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||    
T  4925384 ctgtccatatgggtggtatcacactaaccaatgctcttgtgtcataatatcatggataattggctttggaattgagtagttaaactatacatggtaacaa 4925285  T
Q  298 tgcattactacgttccttttcatgtaattgtcagattttatagatattttgtaatactttgagttttatttcttttaattaataatatattgtaagataa 397  Q
    |||||||||||||||||      |||||||| |||||||||| |||||||  |||||||||||| ||||||||||||||||||| |||||||||||||||    
T  4925284 tgcattactacgttcct------gtaattgttagattttatacatattttagaatactttgagtattatttcttttaattaatagtatattgtaagataa 4925191  T
Q  398 gtgggacctattttagagttttggaggaatggtatggatatttaaaaaatgtagttgaatgatttaaataattgaaaagtgtgaagtaatata 490  Q
    ||| ||||||||||||||||||||| || || |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||    
T  4925190 gtgagacctattttagagttttggaagagtgatatggatatttaaaaaatgtagttgagtggtttaaataattgaaaagtgtgaagtaatata 4925098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 385 - 562
Target Start/End: Complemental strand, 39060333 - 39060156
Alignment:
Q  385 tattgtaagataagtgggacctattttagagttttggaggaatggtatggatatttaaaaaatgtagttgaatgatttaaataattgaaaagtgtgaagt 484  Q
    |||||||||||||||||||||||||||| |||||| ||||| || |||||||||||| ||||| ||||||| || |||||||||| ||||||||||||||    
T  39060333 tattgtaagataagtgggacctattttaaagttttagaggagtgatatggatatttagaaaatatagttgagtggtttaaataatcgaaaagtgtgaagt 39060234  T
Q  485 aatataatgtattatgtgggacccatttataccacccatatgggtggcatggatgtggttgctcttatctcaaattca 562  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||  ||| |||||| |||||||| ||||||||||    
T  39060233 aatataatgtattatgtgggacccatttataccacccatataggtgatatgtatgtgggtgctcttaactcaaattca 39060156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 383 - 551
Target Start/End: Original strand, 34769528 - 34769696
Alignment:
Q  383 tatattgtaagataagtgggacctattttagagttttggaggaatggtatggatatttaaaaaatgtagttgaatgatttaaataattgaaaagtgtgaa 482  Q
    |||||||| |||| ||||||||| ||||||||||||   | |  |||||||||||||||||||||||||||||||| ||||||||||||  ||||||||     
T  34769528 tatattgtgagattagtgggacccattttagagtttataatgggtggtatggatatttaaaaaatgtagttgaatggtttaaataattgggaagtgtgag 34769627  T
Q  483 gtaatataatgtattatgtgggacccatttataccacccatatgggtggcatggatgtggttgctctta 551  Q
    |||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||||| ||||||||    
T  34769628 gtaatataatgtattatgtgggacccgtttataccacccaaatggatggcatggatgtggatgctctta 34769696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 182 - 381
Target Start/End: Complemental strand, 35205943 - 35205743
Alignment:
Q  182 agagcatacatattgcctgtccatatgggtagtatcacactaaccaatgctcttgtgtcataatatcatggataattggctttggaatagagtagtgaaa 281  Q
    ||||||| || || |||||  ||||||||| |||||||| || |||||||| ||||||||||| |||||| ||||||||| ||| ||| |||| || |||    
T  35205943 agagcatgcacatcgcctgcacatatgggtggtatcacattacccaatgcttttgtgtcataagatcatgaataattggcattgaaattgagtggttaaa 35205844  T
Q  282 ctatacatggtagcaatgcattactacgttccttttcatgtaattgtcagattttatagatattttgtaatac-tttgagttttatttcttttaattaat 380  Q
    |||| ||||| || ||||||||||| | ||||||||| || ||||||| |||||| |  | |||||||| ||| |||||||||| |||||||||||||||    
T  35205843 ctatccatggaagtaatgcattactgccttccttttcctgcaattgtctgattttgtgcacattttgtattacttttgagttttttttcttttaattaat 35205744  T
Q  381 a 381  Q
    |    
T  35205743 a 35205743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 203 - 381
Target Start/End: Original strand, 35211228 - 35211407
Alignment:
Q  203 catatgggtagtatcacactaaccaatgctcttgtgtcataatatcatggataattggctttggaatagagtagtgaaactatacatggtagcaatgcat 302  Q
    ||||||||| |||||||| || |||||||| ||||||||||| |||||| ||||||||| ||| ||| |||| || ||||||| |||||||| |||||||    
T  35211228 catatgggtggtatcacattacccaatgcttttgtgtcataagatcatgaataattggcattgaaattgagtggttaaactatccatggtagtaatgcat 35211327  T
Q  303 tactacgttccttttcatgtaattgtcagattttatagatattttgtaatac-tttgagttttatttcttttaattaata 381  Q
    |||| | ||||||||| |  ||||||| |||||| |  | |||||||| ||| |||||||||| ||||||||||||||||    
T  35211328 tactgccttccttttcctacaattgtctgattttgtgcacattttgtattacttttgagttttttttcttttaattaata 35211407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 428 - 551
Target Start/End: Original strand, 9959321 - 9959444
Alignment:
Q  428 ggtatggatatttaaaaaatgtagttgaatgatttaaataattgaaaagtgtgaagtaatataatgtattatgtgggacccatttataccacccatat-g 526  Q
    |||||||||||||| ||||||||||||| |  |||||||||||| ||||||||||||| ||||| |||||| || ||||||||||||||||||||| | |    
T  9959321 ggtatggatatttagaaaatgtagttgagtagtttaaataattggaaagtgtgaagtagtataaagtattacgt-ggacccatttataccacccatgtag 9959419  T
Q  527 ggtggcatggatgtggttgctctta 551  Q
     ||| ||||||||||| ||||||||    
T  9959420 agtgacatggatgtgggtgctctta 9959444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 397 - 525
Target Start/End: Original strand, 23089298 - 23089426
Alignment:
Q  397 agtgggacctattttagagttttggaggaatggtatggatatttaaaaaatgtagttgaatgatttaaataattgaaaagtgtgaagtaatataatgtat 496  Q
    ||||||||  |||||| |||||| || || ||||||| ||||||||||||||| | ||| ||||||||||||||| ||| |||||| ||||||||| |||    
T  23089298 agtgggactcattttaaagttttagatgagtggtatgaatatttaaaaaatgtggatgagtgatttaaataattggaaaatgtgaaataatataatatat 23089397  T
Q  497 tatgtgggacccatttataccacccatat 525  Q
    ||| ||||| |||||||||||| ||||||    
T  23089398 tatatgggatccatttataccatccatat 23089426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 440 - 551
Target Start/End: Original strand, 37902400 - 37902512
Alignment:
Q  440 taaaaaatgtagttgaatgatttaaa-taattgaaaagtgtgaagtaatataatgtattatgtgggacccatttataccacccatatgggtggcatggat 538  Q
    |||||||||||||||| |  |||||| || |||| |||||| |||||||||||| ||| ||||||| | ||||||||||||| |||||||||||||||||    
T  37902400 taaaaaatgtagttgagtagtttaaaatatttgagaagtgtaaagtaatataatatataatgtgggtctcatttataccaccaatatgggtggcatggat 37902499  T
Q  539 gtggttgctctta 551  Q
    |||||||||||||    
T  37902500 gtggttgctctta 37902512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 427 - 549
Target Start/End: Complemental strand, 10523926 - 10523804
Alignment:
Q  427 tggtatggatatttaaaaaatgtagttgaatgatttaaataattgaaaagtgtgaagtaatataatgtattatgtgggacccatttataccacccatatg 526  Q
    ||||||| ||||||| ||||||||  ||| || ||||||||||| |||||||| || ||||||||||||||  |||||  |||||||||||||| |||||    
T  10523926 tggtatgaatatttagaaaatgtaagtgagtggtttaaataattaaaaagtgtaaaataatataatgtattgagtggggtccatttataccaccaatatg 10523827  T
Q  527 ggtggcatggatgtggttgctct 549  Q
    |||| ||||||||||| ||||||    
T  10523826 ggtgacatggatgtgggtgctct 10523804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 489 - 549
Target Start/End: Complemental strand, 4924839 - 4924779
Alignment:
Q  489 taatgtattatgtgggacccatttataccacccatatgggtggcatggatgtggttgctct 549  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  4924839 taatgtattatgtgggactcatttataccacccatatgggtggcatggatgtggttgctct 4924779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 448 - 549
Target Start/End: Original strand, 35211935 - 35212036
Alignment:
Q  448 gtagttgaatgatttaaataattgaaaagtgtgaagtaatataatgtattatgtgggacccatttataccacccatatgggtggcatggatgtggttgct 547  Q
    |||||||| || ||||||||| ||  |||||| |||||||||||| || |||||||||||||||||||||||| || ||||||||||| |||||| ||||    
T  35211935 gtagttgagtggtttaaataactgggaagtgtaaagtaatataatataatatgtgggacccatttataccacctatttgggtggcatgaatgtggatgct 35212034  T
Q  548 ct 549  Q
    ||    
T  35212035 ct 35212036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 398 - 530
Target Start/End: Complemental strand, 14593988 - 14593856
Alignment:
Q  398 gtgggacctattttagagttttggaggaatggtatggatatttaaaaaatgtagttgaatgatttaaataattgaaaagtgtgaagtaatataatgtatt 497  Q
    ||||||||||||||| |||| || | || ||||||| ||||||| |||||||| ||||||| ||||||||||||| |  |||||||||||||||| ||||    
T  14593988 gtgggacctattttacagttatgaaagagtggtatgaatatttataaaatgtaattgaatggtttaaataattgagatttgtgaagtaatataatatatt 14593889  T
Q  498 atgtgggacccatttataccacccatatgggtg 530  Q
      ||||   ||||||||||||  ||||||||||    
T  14593888 gagtggagtccatttataccattcatatgggtg 14593856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 429 - 549
Target Start/End: Original strand, 34383704 - 34383826
Alignment:
Q  429 gtatggatatttaaaaaatgtagttgaatgatttaaataattgaaaagtgtgaagtaatata--atgtattatgtgggacccatttataccacccatatg 526  Q
    |||| |||||||| |||||||||||   || ||||||||||||| |||||| ||||||||||  || ||||||||||  || |||||||||| |||| ||    
T  34383704 gtatagatatttagaaaatgtagttttgtggtttaaataattgagaagtgtaaagtaatataatatatattatgtggatcctatttataccatccatttg 34383803  T
Q  527 ggtggcatggatgtggttgctct 549  Q
    | |||||||||||||||||||||    
T  34383804 gatggcatggatgtggttgctct 34383826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 460 - 549
Target Start/End: Complemental strand, 35205212 - 35205123
Alignment:
Q  460 tttaaataattgaaaagtgtgaagtaatataatgtattatgtgggacccatttataccacccatatgggtggcatggatgtggttgctct 549  Q
    ||||||||| ||  |||||| |||||||||||| || |||||||||||||||||||||||| || |||||||||||||| ||| ||||||    
T  35205212 tttaaataactgggaagtgtaaagtaatataatataatatgtgggacccatttataccacctatttgggtggcatggatttgggtgctct 35205123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 460 - 548
Target Start/End: Complemental strand, 14947745 - 14947657
Alignment:
Q  460 tttaaataattgaaaagtgtgaagtaatataatgtattatgtgggacccatttataccacccatatgggtggcatggatgtggttgctc 548  Q
    |||||||||||||||||| | |||||||||||  |||||||||||| |||||||||||| | |||||| || ||||||||||| |||||    
T  14947745 tttaaataattgaaaagtataaagtaatataaaatattatgtgggatccatttataccatctatatggatgacatggatgtgggtgctc 14947657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 427 - 526
Target Start/End: Complemental strand, 14913555 - 14913456
Alignment:
Q  427 tggtatggatatttaaaaaatgtagttgaatgatttaaataattgaaaagtgtgaagtaatataatgtattatgtgggacccatttataccacccatatg 526  Q
    ||||||| ||||||| ||||| ||||| | |  |||||||||||||||||||| || ||||||||||||||  ||  |||||||||||||||||||||||    
T  14913555 tggtatgaatatttagaaaatatagtttagtagtttaaataattgaaaagtgtaaaataatataatgtatttagtatgacccatttataccacccatatg 14913456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 429 - 538
Target Start/End: Original strand, 23090679 - 23090788
Alignment:
Q  429 gtatggatatttaaaaaatgtagttgaatgatttaaataattgaaaagtgtgaagtaatataatgtattatgtgggacccatttataccacccatatggg 528  Q
    ||||| |||||||||||| |||   || || |||||||||||| ||||||| || ||||||| |||||||||||||||| |||| ||||||  ||||||     
T  23090679 gtatgaatatttaaaaaaggtaagagagtggtttaaataattggaaagtgtaaaataatatattgtattatgtgggaccaatttttaccactaatatgga 23090778  T
Q  529 tggcatggat 538  Q
    ||| ||||||    
T  23090779 tggtatggat 23090788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 387 - 455
Target Start/End: Complemental strand, 35205312 - 35205244
Alignment:
Q  387 ttgtaagataagtgggacctattttagagttttggaggaatggtatggatatttaaaaaatgtagttga 455  Q
    ||||||||||||||||| | ||||||||||||| | ||| ||||||||||||||| |||||||| ||||    
T  35205312 ttgtaagataagtgggagccattttagagttttaggggagtggtatggatatttagaaaatgtaattga 35205244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 387 - 455
Target Start/End: Original strand, 35211839 - 35211907
Alignment:
Q  387 ttgtaagataagtgggacctattttagagttttggaggaatggtatggatatttaaaaaatgtagttga 455  Q
    ||||||||||||||||| | ||||||||||||| | ||| ||||||||||||||| |||||||| ||||    
T  35211839 ttgtaagataagtgggagccattttagagttttaggggagtggtatggatatttagaaaatgtaattga 35211907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 429 - 490
Target Start/End: Complemental strand, 16280988 - 16280927
Alignment:
Q  429 gtatggatatttaaaaaatgtagttgaatgatttaaataattgaaaagtgtgaagtaatata 490  Q
    ||||| ||||||| ||||| ||||||  |||||| |||||||||||||||||||||||||||    
T  16280988 gtatgaatatttagaaaatatagttgtgtgatttgaataattgaaaagtgtgaagtaatata 16280927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 383 - 447
Target Start/End: Complemental strand, 14947868 - 14947804
Alignment:
Q  383 tatattgtaagataagtgggacctattttagagttttggaggaatggtatggatatttaaaaaat 447  Q
    ||||||||||||| |||| | ||||||||| ||||||||| || ||||||| |||||||||||||    
T  14947868 tatattgtaagattagtgagtcctattttaaagttttggaagagtggtatgaatatttaaaaaat 14947804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 482 - 549
Target Start/End: Original strand, 38698221 - 38698288
Alignment:
Q  482 agtaatataatgtattatgtgggacccatttataccacccatatgggtggcatggatgtggttgctct 549  Q
    ||||||||||||||||  |||||| ||||||||||||| |||||| || | |||||||||| ||||||    
T  38698221 agtaatataatgtattcagtgggatccatttataccactcatatgagtagtatggatgtggatgctct 38698288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 383 - 477
Target Start/End: Complemental strand, 29812117 - 29812023
Alignment:
Q  383 tatattgtaagataagtgggacctattttagagttttggaggaatggtatggatatttaaaaaatgtagttgaatgatttaaataattgaaaagt 477  Q
    |||||||| |||| ||||| || | |||||||||||| || ||||| |||| ||||||||||||  || ||||||  ||||||||||||| ||||    
T  29812117 tatattgtgagattagtggaacatgttttagagttttagatgaatgatatgaatatttaaaaaaattaattgaattgtttaaataattgagaagt 29812023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 407 - 448
Target Start/End: Complemental strand, 16328124 - 16328083
Alignment:
Q  407 attttagagttttggaggaatggtatggatatttaaaaaatg 448  Q
    ||||| ||||||||||| | ||||||||||||||||||||||    
T  16328124 atttttgagttttggagaagtggtatggatatttaaaaaatg 16328083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 489 - 534
Target Start/End: Original strand, 35205071 - 35205116
Alignment:
Q  489 taatgtattatgtgggacccatttataccacccatatgggtggcat 534  Q
    |||| ||||||||||| ||||||||||||||| |||||| ||||||    
T  35205071 taatatattatgtgggtcccatttataccaccaatatggatggcat 35205116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 489 - 534
Target Start/End: Complemental strand, 35212088 - 35212043
Alignment:
Q  489 taatgtattatgtgggacccatttataccacccatatgggtggcat 534  Q
    |||| ||||||||||| ||||||||||||||| |||||| ||||||    
T  35212088 taatatattatgtgggtcccatttataccaccaatatggatggcat 35212043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 430 - 490
Target Start/End: Original strand, 39030023 - 39030083
Alignment:
Q  430 tatggatatttaaaaaatgtagttgaatgatttaaataattgaaaagtgtgaagtaatata 490  Q
    |||| ||||||||| |||||| || ||| |||||||||||| ||||||||||  |||||||    
T  39030023 tatgaatatttaaataatgtaattcaatcatttaaataattaaaaagtgtgatataatata 39030083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 157; Significance: 4e-83; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 321 - 549
Target Start/End: Original strand, 39375605 - 39375833
Alignment:
Q  321 gtaattgtcagattttatagatattttgtaatactttgagttttatttcttttaattaataatatattgtaagataagtgggacctattttagagttttg 420  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||    
T  39375605 gtaattgtcagattttatagatattttgtaatactttaagttttatttcttttaattaataatatattgtaagataagtgggacctgttttaaaattttg 39375704  T
Q  421 gaggaatggtatggatatttaaaaaatgtagttgaatgatttaaataattgaaaagtgtgaagtaatataatgtattatgtgggacccatttataccacc 520  Q
    ||||||||||||||||||||||||||| ||||||| || |||||||||||| ||| | |||||||||||||| |||||| || ||| |||||||| || |    
T  39375705 gaggaatggtatggatatttaaaaaatatagttgagtggtttaaataattggaaaatatgaagtaatataatatattatatgagactcatttatatcatc 39375804  T
Q  521 catatgggtggcatggatgtggttgctct 549  Q
    ||||||| ||||||| |||||||||||||    
T  39375805 catatggatggcatgtatgtggttgctct 39375833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 383 - 551
Target Start/End: Original strand, 32914418 - 32914586
Alignment:
Q  383 tatattgtaagataagtgggacctattttagagttttggaggaatggtatggatattta-aaaaatgtagttgaatgatttaaataattgaaaagtgtga 481  Q
    ||||||||||||| ||||||||||||||||||||||| ||| | ||||||||||||||| |||||||||||||| || ||||||||||||||||||||||    
T  32914418 tatattgtaagattagtgggacctattttagagtttttgag-agtggtatggatatttagaaaaatgtagttgagtggtttaaataattgaaaagtgtga 32914516  T
Q  482 agtaatataatgtattatgtgggacccatttataccacccatatgggtggcatggatgtggttgctctta 551  Q
    ||||||||||  |||||| |||||||||||||||| || ||||||| || ||||||||||| ||||||||    
T  32914517 agtaatataaaatattatatgggacccatttatactactcatatggatgacatggatgtgggtgctctta 32914586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 383 - 548
Target Start/End: Complemental strand, 6859130 - 6858965
Alignment:
Q  383 tatattgtaagataagtgggacctattttagagttttggaggaatggtatggatatttaaaaaatgtagttgaatgatttaaataattgaaaagtgtgaa 482  Q
    |||||||||||||||||| ||||||||||| |||||| ||  | ||| ||||||||||| ||||| ||||| | || ||||||||||||  |||||||||    
T  6859130 tatattgtaagataagtgagacctattttaaagtttttgaaaagtggcatggatatttagaaaatatagtttagtggtttaaataattgggaagtgtgaa 6859031  T
Q  483 gtaatataatgtattatgtgggacccatttataccacccatatgggtggcatggatgtggttgctc 548  Q
    |||||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||| |||||    
T  6859030 gtaatatattgtattacgtgggacccatttataccacccatatgggtggtatggatgtggatgctc 6858965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 385 - 549
Target Start/End: Complemental strand, 33386805 - 33386646
Alignment:
Q  385 tattgtaagataagtgggacctattttagagttttggaggaatggtatggatatttaaaaaatgtagttgaatgatttaaataattgaaaagtgtgaagt 484  Q
    ||||||||||||||||||||| ||||||||||||| ||||| ||||||| ||||||| |||||| | |||| || ||||||||||||  || ||| ||||    
T  33386805 tattgtaagataagtgggacccattttagagttttagaggagtggtatgaatatttagaaaatgcaattgagtggtttaaataattgggaattgtaaagt 33386706  T
Q  485 aatataatgtattatgtgggacccatttataccacccatatgggtggcatggatgtggttgctct 549  Q
    ||||     ||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||    
T  33386705 aata-----tattatgtgggtcccatttataccactcatttgggtggcatggatgtggttgctct 33386646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 407 - 549
Target Start/End: Original strand, 14657495 - 14657636
Alignment:
Q  407 attttagagttttggaggaatggtatggatatttaaaaaatgtagttgaatgatttaaataattgaaaagtgtgaagtaatataatgtattatgtgggac 506  Q
    ||||||||||||||||| | || |||| ||||||| ||||||||||||| || |||||||||||| |||||||||| ||||||||||||||||||| ||     
T  14657495 attttagagttttggagcagtgatatgaatatttagaaaatgtagttgagtggtttaaataattggaaagtgtgaaataatataatgtattatgtgtga- 14657593  T
Q  507 ccatttataccacccatatgggtggcatggatgtggttgctct 549  Q
    ||||||||||||||||||| | || ||| ||||||| ||||||    
T  14657594 ccatttataccacccatatagatgccatagatgtggatgctct 14657636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 182 - 269
Target Start/End: Original strand, 39375513 - 39375600
Alignment:
Q  182 agagcatacatattgcctgtccatatgggtagtatcacactaaccaatgctcttgtgtcataatatcatggataattggctttggaat 269  Q
    |||||||||| ||||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  39375513 agagcatacacattgcctgtccatatgggtggtatcatactaaccaatactcttgtgtcataatatcatggataattggctttggaat 39375600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 383 - 549
Target Start/End: Complemental strand, 9104709 - 9104543
Alignment:
Q  383 tatattgtaagataagtgggacctattttagagttttggaggaatggtatggatatttaaaaaatgtagttgaatgatttaaataattgaaaagtgtgaa 482  Q
    ||||||||||||| | ||| ||| |||||| | |||| || || |||||| |||||||||||||||||||||| || ||||||||||||| || ||||||    
T  9104709 tatattgtaagattaatggaacccattttaaaattttagaagagtggtatagatatttaaaaaatgtagttgagtggtttaaataattgagaattgtgaa 9104610  T
Q  483 gtaatataatgtattatgtgggacccatttataccacccatatgggtggcatggatgtggttgctct 549  Q
     ||||||||  |||||  || ||||||||||||||||||||||| |||  |||||||| | ||||||    
T  9104609 ataatataaaatattagatgagacccatttataccacccatatgagtgagatggatgtaggtgctct 9104543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 427 - 527
Target Start/End: Original strand, 18565743 - 18565843
Alignment:
Q  427 tggtatggatatttaaaaaatgtagttgaatgatttaaataattgaaaagtgtgaagtaatataatgtattatgtgggacccatttataccacccatatg 526  Q
    ||||||||||||||||||||||||||||| | |||||||||||||| ||||   ||||||||||||||||||| || |||||||||||||||| ||||||    
T  18565743 tggtatggatatttaaaaaatgtagttgagtcatttaaataattgagaagtcgaaagtaatataatgtattatatgagacccatttataccactcatatg 18565842  T
Q  527 g 527  Q
    |    
T  18565843 g 18565843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 429 - 552
Target Start/End: Original strand, 37069906 - 37070030
Alignment:
Q  429 gtatggatatttaaaaaa-tgtagttgaatgatttaaataattgaaaagtgtgaagtaatataatgtattatgtgggacccatttataccacccatatgg 527  Q
    |||||||||||||||||| ||||   || || ||||||||||||  |||||| || ||||||| | ||||||||||||||||||||||||||||| ||||    
T  37069906 gtatggatatttaaaaaaatgtaagagagtggtttaaataattgggaagtgtaaaataatatattatattatgtgggacccatttataccacccaaatgg 37070005  T
Q  528 gtggcatggatgtggttgctcttat 552  Q
    ||||||||||||||| |||||||||    
T  37070006 gtggcatggatgtggatgctcttat 37070030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 397 - 492
Target Start/End: Original strand, 8322145 - 8322240
Alignment:
Q  397 agtgggacctattttagagttttggaggaatggtatggatatttaaaaaatgtagttgaatgatttaaataattgaaaagtgtgaagtaatataat 492  Q
    |||||||| ||||||||||||||||| || ||||||| |||||| ||||||||| |||| || |||||||||||||||||||||||||||||||||    
T  8322145 agtgggacttattttagagttttggatgagtggtatgaatatttgaaaaatgtaattgagtggtttaaataattgaaaagtgtgaagtaatataat 8322240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 460 - 549
Target Start/End: Original strand, 7395461 - 7395550
Alignment:
Q  460 tttaaataattgaaaagtgtgaagtaatataatgtattatgtgggacccatttataccacccatatgggtggcatggatgtggttgctct 549  Q
    ||||||||||||||||||||||||||||||||  ||||| ||||||||||||||||| ||||||||| ||||||||||| ||| ||||||    
T  7395461 tttaaataattgaaaagtgtgaagtaatataaaatattaggtgggacccatttatactacccatatgagtggcatggatatgggtgctct 7395550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 430 - 551
Target Start/End: Original strand, 3739492 - 3739613
Alignment:
Q  430 tatggatatttaaaaaatgtagttgaatgatttaaataattgaaaagtgtgaagtaatataatgtattatgtgggacccatttataccacccatatgggt 529  Q
    |||||||||||| ||||||||||| | || ||||||||||   |||||||||  ||||||||||||||   ||||| |||||||||||| ||||||||||    
T  3739492 tatggatatttagaaaatgtagttaagtggtttaaataataagaaagtgtgagataatataatgtattcaatgggatccatttataccatccatatgggt 3739591  T
Q  530 ggcatggatgtggttgctctta 551  Q
    || |||||||||| ||||||||    
T  3739592 ggtatggatgtggatgctctta 3739613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 409 - 525
Target Start/End: Original strand, 3739849 - 3739965
Alignment:
Q  409 tttagagttttggaggaatggtatggatatttaaaaaatgtagttgaatgatttaaataattgaaaagtgtgaagtaatataatgtattatgtgggaccc 508  Q
    |||| |||||| || |||||||||  ||||||| || |||||| ||||||||||||||||||||||| | | || ||||||||||||||||||| ||||     
T  3739849 tttaaagttttagatgaatggtataaatatttagaatatgtagatgaatgatttaaataattgaaaaatataaaataatataatgtattatgtgagacct 3739948  T
Q  509 atttataccacccatat 525  Q
    |||||||||| ||||||    
T  3739949 atttataccatccatat 3739965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 397 - 549
Target Start/End: Original strand, 40095764 - 40095916
Alignment:
Q  397 agtgggacctattttagagttttggaggaatggtatggatatttaaaaaatgtagttgaatgatttaaataattgaaaagtgtgaagtaatataatgtat 496  Q
    ||||||||| ||| |||| ||||||  || ||||||| ||||||||||||||||||||| |  ||||||||||||| |||||| |||||||||||| |||    
T  40095764 agtgggaccaattctagaattttgggtgagtggtatgaatatttaaaaaatgtagttgagtagtttaaataattgagaagtgtaaagtaatataatatat 40095863  T
Q  497 tatgtgggacccatttataccacccatatgggtggcatggatgtggttgctct 549  Q
    ||  ||||  |||||||||||||| | |||  || ||| ||||||| ||||||    
T  40095864 tagatggggtccatttataccaccaaaatgaatgacatagatgtggatgctct 40095916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 398 - 524
Target Start/End: Complemental strand, 5147226 - 5147101
Alignment:
Q  398 gtgggacctattttagagttttggaggaatggtatggatatttaaaaaatgtagttgaatgatttaaataattgaaaagtgtgaagtaatataatgtatt 497  Q
    ||||||||  ||||| |||||||||| | | ||||| ||||||| ||||||||||||||||||||||||||| |  ||||||||  ||||||||| ||||    
T  5147226 gtgggacccgttttaaagttttggag-agtagtatgaatatttagaaaatgtagttgaatgatttaaataatagggaagtgtgagataatataatatatt 5147128  T
Q  498 atgtgggacccatttataccacccata 524  Q
      |||| ||||||| ||||||||||||    
T  5147127 cagtggaacccattcataccacccata 5147101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 435 - 525
Target Start/End: Original strand, 4897252 - 4897342
Alignment:
Q  435 atatttaaaaaatgtagttgaatgatttaaataattgaaaagtgtgaagtaatataatgtattatgtgggacccatttataccacccatat 525  Q
    ||||||| ||||||||||||| |  |||||||||||||||| ||||||||||| |||| |||||| || || |||||||||||||| ||||    
T  4897252 atatttagaaaatgtagttgagtagtttaaataattgaaaaatgtgaagtaatgtaatatattatatgtgatccatttataccacctatat 4897342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 435 - 525
Target Start/End: Original strand, 4944646 - 4944736
Alignment:
Q  435 atatttaaaaaatgtagttgaatgatttaaataattgaaaagtgtgaagtaatataatgtattatgtgggacccatttataccacccatat 525  Q
    ||||||| ||||||||||||| |  |||||||||||||||| ||||||||||| |||| |||||| || || |||||||||||||| ||||    
T  4944646 atatttagaaaatgtagttgagtagtttaaataattgaaaaatgtgaagtaatgtaatatattatatgtgatccatttataccacctatat 4944736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 11 - 76
Target Start/End: Complemental strand, 34414362 - 34414297
Alignment:
Q  11 cacagatattaccatttaatatgtttcaatttgtacttaatgaatgtatttatctaaacgcaaatt 76  Q
    ||||||||||| |||||||||| |||||||||| ||||| ||||||||||||||||| ||||||||    
T  34414362 cacagatattagcatttaatatttttcaatttgaacttattgaatgtatttatctaagcgcaaatt 34414297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 475 - 551
Target Start/End: Complemental strand, 37258201 - 37258125
Alignment:
Q  475 agtgtgaagtaatataatgtattatgtgggacccatttataccacccatatgggtggcatggatgtggttgctctta 551  Q
    |||||||| ||||||||| |||||| || ||||||||||||||| ||||||| ||| ||||||||||| ||||||||    
T  37258201 agtgtgaaataatataatatattatatgagacccatttataccatccatatgagtgacatggatgtggatgctctta 37258125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 398 - 542
Target Start/End: Original strand, 38609893 - 38610036
Alignment:
Q  398 gtgggacctattttagagttttggaggaatggtatggatatttaaaaaatgtagttgaatgatttaaataattgaaaagtgtgaagtaatataatgtatt 497  Q
    |||||||| |||||| |||||||||| | | ||||||||||||| ||||| || |||| || ||||||||||   ||||||| || ||||||||| ||||    
T  38609893 gtgggacccattttaaagttttggag-agtagtatggatatttagaaaatataattgagtggtttaaataataagaaagtgtaaaataatataatatatt 38609991  T
Q  498 atgtgggacccatttataccacccatatgggtggcatggatgtgg 542  Q
      ||| || |||||||||||| | |||| ||||| ||||||||||    
T  38609992 cagtgagatccatttataccatcaatataggtggtatggatgtgg 38610036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 436 - 549
Target Start/End: Original strand, 43490502 - 43490616
Alignment:
Q  436 tatttaaaaaatgtagttgaatgatttaaataattgaaaagtgtgaagtaata-taatgtattatgtgggacccatttataccacccatatgggtggcat 534  Q
    ||||||||||||||| ||||||||||||||||||| |||| |||||| ||||| | || |||||||||||   ||||||||||| | || || |||| ||    
T  43490502 tatttaaaaaatgtatttgaatgatttaaataattaaaaaatgtgaaataatatttatatattatgtggggttcatttataccatcaatgtgcgtggtat 43490601  T
Q  535 ggatgtggttgctct 549  Q
    | |||||| ||||||    
T  43490602 gaatgtggatgctct 43490616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 459 - 549
Target Start/End: Original strand, 29794378 - 29794468
Alignment:
Q  459 atttaaataattgaaaagtgtgaagtaatataatgtattatgtgggacccatttataccacccatatgggtggcatggatgtggttgctct 549  Q
    ||||||||||| |||||||||||| ||||||||| ||||| ||||   |||||||||||||| | ||| |||| |||||| ||| ||||||    
T  29794378 atttaaataatcgaaaagtgtgaaataatataatatattaggtggagtccatttataccaccaaaatgtgtggtatggatatggatgctct 29794468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 391 - 492
Target Start/End: Complemental strand, 29985014 - 29984913
Alignment:
Q  391 aagataagtgggacctattttagagttttggaggaatggtatggatatttaaaaaatgtagttgaatgatttaaataattgaaaagtgtgaagtaatata 490  Q
    ||||| |||||||| |||||||||||| |||| || || |||||||||  ||||||| ||||||| |  ||||||||||| | |||| | || |||||||    
T  29985014 aagattagtgggacatattttagagttatggatgagtgatatggatatacaaaaaatttagttgagttgtttaaataattaagaagtataaaataatata 29984915  T
Q  491 at 492  Q
    ||    
T  29984914 at 29984913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 398 - 450
Target Start/End: Original strand, 7394958 - 7395010
Alignment:
Q  398 gtgggacctattttagagttttggaggaatggtatggatatttaaaaaatgta 450  Q
    |||||||| |||||||||||||||| || | |||||||||||| |||||||||    
T  7394958 gtgggacccattttagagttttggatgagttgtatggatatttgaaaaatgta 7395010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 397 - 479
Target Start/End: Complemental strand, 3384804 - 3384722
Alignment:
Q  397 agtgggacctattttagagttttggaggaatggtatggatatttaaaaaatgtagttgaatgatttaaataattgaaaagtgt 479  Q
    ||||||||| |||||| | |||| || || || |||| ||||||| |||||||||||||||  |||||||||||  |||||||    
T  3384804 agtgggacccattttaaattttttgatgagtgatatgaatatttataaaatgtagttgaattgtttaaataattagaaagtgt 3384722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 157; Significance: 4e-83; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 182 - 452
Target Start/End: Complemental strand, 7386610 - 7386351
Alignment:
Q  182 agagcatacatattgcctgtccatatgggtagtatcacactaaccaatgctcttgtgtcataatatcatggataattggctttggaatagagtagtgaaa 281  Q
    |||||||||| || |||  ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||    
T  7386610 agagcatacacatcgcccatccatatgggtggtatcacactaaccaatgctcttgtgtcataatatcatggataattggctttggaattgagtagttaaa 7386511  T
Q  282 ctatacatggtagcaatgcattactacgttccttttcatgtaattgtcagattttatagatattttgtaatactttgagttttatttcttttaattaata 381  Q
     |||||||||||||||||||||||||||||||||||| |||||||||||||           ||||||||||||||||||||||||||||||||||||||    
T  7386510 ttatacatggtagcaatgcattactacgttccttttcctgtaattgtcaga-----------ttttgtaatactttgagttttatttcttttaattaata 7386422  T
Q  382 atatattgtaagataagtgggacctattttagagttttggaggaatggtatggatatttaaaaaatgtagt 452  Q
     |||||||||||||||||| ||||||||||| | ||||  |||| || ||||||||| || ||||||||||    
T  7386421 gtatattgtaagataagtgagacctattttaaaattttaaaggagtgatatggatatatagaaaatgtagt 7386351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 384 - 551
Target Start/End: Original strand, 23570967 - 23571134
Alignment:
Q  384 atattgtaagataagtgggacctattttagagttttggaggaatggtatggatatttaaaaaatgtagttgaatgatttaaataattgaaaagtgtgaag 483  Q
    |||||||||||||||||||||  ||||||||||||||||||| ||||||||||||||||||||| ||||||| |  |||||||||| ||||| |||||||    
T  23570967 atattgtaagataagtgggactcattttagagttttggaggagtggtatggatatttaaaaaatatagttgagttgtttaaataatggaaaaatgtgaag 23571066  T
Q  484 taatataatgtattatgtgggacccatttataccacccatatgggtggcatggatgtggttgctctta 551  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||    
T  23571067 taatataatgtattatgtgggacccatttataccacccatatgggtggtatggatgcgggtgctctta 23571134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 355 - 492
Target Start/End: Original strand, 19322751 - 19322888
Alignment:
Q  355 tttgagttttatttcttttaattaataatatattgtaagataagtgggacctattttagagttttggaggaatggtatggatatttaaaaaatgtagttg 454  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  19322751 tttgagttttatttcttttaattaatagtatattgtaagataagtgggatctattttagagttttggagaagtggtatggatatttaaaaaatgtagttg 19322850  T
Q  455 aatgatttaaataattgaaaagtgtgaagtaatataat 492  Q
    |||| ||||||||||||| |||| || |||||||||||    
T  19322851 aatggtttaaataattgagaagtatgtagtaatataat 19322888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 383 - 549
Target Start/End: Complemental strand, 37457762 - 37457596
Alignment:
Q  383 tatattgtaagataagtgggacctattttagagttttggaggaatggtatggatatttaaaaaatgtagttgaatgatttaaataattgaaaagtgtgaa 482  Q
    |||||||||||||||||||||||||||||| ||||||||| || ||||||| ||||||| ||||| ||||||| || ||| ||||||||| |||||||||    
T  37457762 tatattgtaagataagtgggacctattttaaagttttggaagagtggtatgtatatttagaaaatatagttgagtggttttaataattgagaagtgtgaa 37457663  T
Q  483 gtaatataatgtattatgtgggacccatttataccacccatatgggtggcatggatgtggttgctct 549  Q
     ||||||| ||||||| ||||||||||||||||||||| ||||||||||  ||||||||| ||||||    
T  37457662 ataatatattgtattacgtgggacccatttataccacctatatgggtggtgtggatgtggatgctct 37457596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 387 - 549
Target Start/End: Complemental strand, 7900290 - 7900128
Alignment:
Q  387 ttgtaagataagtgggacctattttagagttttggaggaatggtatggatatttaaaaaatgtagttgaatgatttaaataattgaaaagtgtgaagtaa 486  Q
    ||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||| ||||||||||||| || ||||||||||||  |||| | ||||||    
T  7900290 ttgtaagataagtgggacccattttagagttttagaggagtggtatggatatttagaaaatgtagttgagtggtttaaataattgggaagtataaagtaa 7900191  T
Q  487 tataatgtattatgtgggacccatttataccacccatatgggtggcatggatgtggttgctct 549  Q
    |||||| ||||||||||| ||||||||||| | |||| | |||||||||||||||| ||||||    
T  7900190 tataatatattatgtgggtcccatttatacgatccatttaggtggcatggatgtgggtgctct 7900128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 387 - 549
Target Start/End: Original strand, 19993339 - 19993501
Alignment:
Q  387 ttgtaagataagtgggacctattttagagttttggaggaatggtatggatatttaaaaaatgtagttgaatgatttaaataattgaaaagtgtgaagtaa 486  Q
    |||||||||||||| |||||||||||||||||| ||||| ||||||||||||||| ||||| ||||||| || ||||||||||| |||||||| ||||||    
T  19993339 ttgtaagataagtgtgacctattttagagttttagaggagtggtatggatatttagaaaatatagttgagtggtttaaataattaaaaagtgtaaagtaa 19993438  T
Q  487 tataatgtattatgtgggacccatttataccacccatatgggtggcatggatgtggttgctct 549  Q
    |||||| ||||||||||  ||||| |||||||||||| || || |||||||||||| ||||||    
T  19993439 tataatatattatgtggatcccatctataccacccatttgagttgcatggatgtggatgctct 19993501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 383 - 549
Target Start/End: Complemental strand, 43496536 - 43496370
Alignment:
Q  383 tatattgtaagataagtgggacctattttagagttttggaggaatggtatggatatttaaaaaatgtagttgaatgatttaaataattgaaaagtgtgaa 482  Q
    |||| ||| |||| ||||||||| ||||||||||||   | |  |||||||||||||||||||||||||||||||  ||||||||||||| ||||||||     
T  43496536 tataatgtgagattagtgggacccattttagagtttataatgggtggtatggatatttaaaaaatgtagttgaatagtttaaataattgagaagtgtgag 43496437  T
Q  483 gtaatataatgtattatgtgggacccatttataccacccatatgggtggcatggatgtggttgctct 549  Q
    |||||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||| ||||||    
T  43496436 gtaatataatgtattatgtgggacccgtttataccatccaaatgggtggcatggatgtggatgctct 43496370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 381 - 549
Target Start/End: Original strand, 46823590 - 46823757
Alignment:
Q  381 aatatattgtaagataagtgggacctattttagagttttggaggaatggtatggatatttaaaaaatgtagttgaatgatttaaataattgaaaagtgtg 480  Q
    ||||||||||||||| ||||||||| ||| || ||||||| | ||||||||||||| |||| ||||||||||||| || |||||||||||||||||||||    
T  46823590 aatatattgtaagattagtgggacccattata-agttttgtaagaatggtatggatgtttagaaaatgtagttgagtggtttaaataattgaaaagtgtg 46823688  T
Q  481 aagtaatataatgtattatgtgggacccatttataccacccatat-gggtggcatggatgtggttgctct 549  Q
    ||||||||||| ||||||  ||||||||||||||||||||||| | | ||||||||||||||| ||||||    
T  46823689 aagtaatataaagtatta-ctgggacccatttataccacccatgtagagtggcatggatgtgggtgctct 46823757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 383 - 551
Target Start/End: Complemental strand, 1035883 - 1035715
Alignment:
Q  383 tatattgtaagataagtgggacctattttagagttttggaggaatggtatggatatttaaaaaatgtagttgaatgatttaaataattgaaaagtgtgaa 482  Q
    |||||||||||||||||| ||| ||||||| ||||||||| || ||||||| ||||||| ||||| ||||| | || ||||||||||||| |||||||||    
T  1035883 tatattgtaagataagtgagacatattttaaagttttggaagagtggtatgtatatttagaaaatatagtttagtggtttaaataattgagaagtgtgaa 1035784  T
Q  483 gtaatataatgtattatgtgggacccatttataccacccatatgggtggcatggatgtggttgctctta 551  Q
     ||||||| |||||||  |||||||||| ||||||||||||||| |||| |||||||||| ||||||||    
T  1035783 ataatatattgtattacatgggacccatatataccacccatatgagtggtatggatgtggatgctctta 1035715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 397 - 551
Target Start/End: Original strand, 50428451 - 50428605
Alignment:
Q  397 agtgggacctattttagagttttggaggaatggtatggatatttaaaaaatgtagttgaatgatttaaataattgaaaagtgtgaagtaatataatgtat 496  Q
    ||||||||| | ||||||||||||||||| ||||||||||||||| ||||| ||||||| |||||||||||||||| ||||||||||||||||||| |||    
T  50428451 agtgggacccactttagagttttggaggagtggtatggatatttagaaaatatagttgagtgatttaaataattgagaagtgtgaagtaatataatttat 50428550  T
Q  497 tatgtgggacccatttataccacccatatgggtggcatggatgtggttgctctta 551  Q
    |  ||| || ||||||||||||||||||||  || ||||||| ||| ||||||||    
T  50428551 tgcgtgagatccatttataccacccatatgaatgacatggatatggatgctctta 50428605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 381 - 551
Target Start/End: Original strand, 7167954 - 7168124
Alignment:
Q  381 aatatattgtaagataagtgggacctattttagagttttggaggaatggtatggatattta-aaaaatgtagttgaatgatttaaataattgaaaagtgt 479  Q
    ||||||||||||||| |||| |||||||||||||||||||||| | | || |||||||||| |||||||||||||  || |||||||||||| ||| |||    
T  7167954 aatatattgtaagattagtgagacctattttagagttttggag-agtcgtgtggatatttagaaaaatgtagttgggtggtttaaataattggaaaatgt 7168052  T
Q  480 gaagtaatataatgtattatgtgggacccatttataccacccatatgggtggcatggatgtggttgctctta 551  Q
     |||||||||||  ||||||||| ||||||||||||| || |||||||||| ||||||||||  ||||||||    
T  7168053 aaagtaatataaaatattatgtgagacccatttatactactcatatgggtgacatggatgtgagtgctctta 7168124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 383 - 525
Target Start/End: Complemental strand, 51613392 - 51613251
Alignment:
Q  383 tatattgtaagataagtgggacctattttagagttttggaggaatggtatggatatttaaaaaatgtagttgaatgatttaaataattgaaaagtgtgaa 482  Q
    ||||||||||||| ||||||||| |||||| ||||||||| || |||||||  |||||| ||||||||||||| || |||||||||||| ||||||||||    
T  51613392 tatattgtaagattagtgggacccatttta-agttttggaagagtggtatgagtatttagaaaatgtagttgagtggtttaaataattggaaagtgtgaa 51613294  T
Q  483 gtaatataatgtattatgtgggacccatttataccacccatat 525  Q
    |||||||||  |||||||||||| ||||||||||||| |||||    
T  51613293 gtaatataaattattatgtgggatccatttataccactcatat 51613251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 401 - 552
Target Start/End: Complemental strand, 47394492 - 47394339
Alignment:
Q  401 ggacctattttagagttttggaggaatggtatggatatttaaaaaatgtagttgaatgatttaaataattgaaaagtgtgaagtaatataatgtattatg 500  Q
    ||||| |||||||| |||| || || ||||||| |||||||||||||||||  || |  ||||||||||||  |||||||||||||||||||||||||||    
T  47394492 ggacccattttagacttttagaagagtggtatgaatatttaaaaaatgtagacgagtagtttaaataattgggaagtgtgaagtaatataatgtattatg 47394393  T
Q  501 tgggacccatttataccacccatatgg--gtggcatggatgtggttgctcttat 552  Q
    ||| |||||||||||| || || ||||  |||| |||||||||| |||||||||    
T  47394392 tggaacccatttatactactcaaatgggtgtggtatggatgtggatgctcttat 47394339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 202 - 381
Target Start/End: Original strand, 19991215 - 19991395
Alignment:
Q  202 ccatatgggtagtatcacactaaccaatgctcttgtgtcataatatcatggataattggctttggaatagagtagtgaaactatacatggtagcaatgca 301  Q
    |||||||||| ||||||||||  |||||||| ||||||||||| |||||||||||||||| ||| ||| ||||||| ||||||| |||||||  |||| |    
T  19991215 ccatatgggtggtatcacactgcccaatgcttttgtgtcataagatcatggataattggcattgaaattgagtagttaaactatccatggtaataatgga 19991314  T
Q  302 ttactacgttccttttcatgtaattgtcagattttatagatattttgtaatac-tttgag-ttttatttcttttaattaata 381  Q
    ||||||| ||||||||| || ||||||  |||||| |  | |||||||| ||| |||||| |||| ||||||||||||||||    
T  19991315 ttactaccttccttttcctgcaattgt-tgattttgtgcacattttgtattacttttgagtttttttttcttttaattaata 19991395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 407 - 552
Target Start/End: Complemental strand, 16680024 - 16679879
Alignment:
Q  407 attttagagttttggaggaatggtatggatatttaaaaaatgtagttgaatgatttaaataattgaaaagtgtgaagtaatataatgtattatgtgggac 506  Q
    |||||||||||||| | || ||||||| |||||| ||||||||| ||||||| || |||||||||| ||||||||||||||||||| ||    ||| |      
T  16680024 attttagagttttgaatgagtggtatgtatatttgaaaaatgtaattgaatggttaaaataattgagaagtgtgaagtaatataatatacagggtgaggt 16679925  T
Q  507 ccatttataccacccatatgggtggcatggatgtggttgctcttat 552  Q
    ||||| |||||||||||||| ||||||| ||||||| |||||||||    
T  16679924 ccattgataccacccatatgagtggcattgatgtggatgctcttat 16679879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 429 - 541
Target Start/End: Original strand, 10574368 - 10574480
Alignment:
Q  429 gtatggatatttaaaaaatgtagttgaatgatttaaataattgaaaagtgtgaagtaatataatgtattatgtgggacccatttataccacccatatggg 528  Q
    ||||| ||||||||||||| || |||| |||||||||||||||| || |||||||||||||| | |||||||||| || ||||||||||||  ||||  |    
T  10574368 gtatgaatatttaaaaaatataattgagtgatttaaataattgagaaatgtgaagtaatatattatattatgtggaactcatttataccacttatattag 10574467  T
Q  529 tggcatggatgtg 541  Q
    |||||||||||||    
T  10574468 tggcatggatgtg 10574480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 380 - 491
Target Start/End: Original strand, 26707081 - 26707191
Alignment:
Q  380 taatatattgtaagataagtgggacctattttagagttttggaggaatggtatggatatttaaaaaatgtagttgaatgatttaaataattgaaaagtgt 479  Q
    ||||||||||||| || ||||||||  ||| || ||||||| | || ||||||| ||||||| |||||||||||||||| ||||||||||||||||||||    
T  26707081 taatatattgtaaaattagtgggactcattgta-agttttgtaagagtggtatgaatatttagaaaatgtagttgaatggtttaaataattgaaaagtgt 26707179  T
Q  480 gaagtaatataa 491  Q
    ||| ||||||||    
T  26707180 gaactaatataa 26707191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 201 - 285
Target Start/End: Original strand, 19322649 - 19322733
Alignment:
Q  201 tccatatgggtagtatcacactaaccaatgctcttgtgtcataatatcatggataattggctttggaatagagtagtgaaactat 285  Q
    ||||||||||| |||| ||| ||||||| | |||||||||||||||||||| |||||||||||| |||| ||||||| |||||||    
T  19322649 tccatatgggtggtattacaataaccaacgttcttgtgtcataatatcatgaataattggctttagaattgagtagttaaactat 19322733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 383 - 497
Target Start/End: Complemental strand, 27641657 - 27641543
Alignment:
Q  383 tatattgtaagataagtgggacctattttagagttttggaggaatggtatggatatttaaaaaatgtagttgaatgatttaaataattgaaaagtgtgaa 482  Q
    |||||||| | ||||||  |||| |||||| |||||| || || ||||||||||||||  ||||| ||||||  || ||||||||| ||| |||| ||||    
T  27641657 tatattgtgaaataagtaagacccattttaaagttttagatgagtggtatggatatttggaaaatttagttgggtggtttaaataactgagaagtatgaa 27641558  T
Q  483 gtaatataatgtatt 497  Q
     ||||||||||||||    
T  27641557 ctaatataatgtatt 27641543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 29081597 - 29081680
Alignment:
Q  16 atattaccatttaatatgtttcaatttgtacttaatgaatgtatttatctaaacgcaaattttaaagaaattaacctgttcccg 99  Q
    |||||| ||||||||||||||||||||  ||||| |||| |||||| ||||| |||||||| | ||||| ||| | ||||||||    
T  29081597 atattagcatttaatatgtttcaatttagacttattgaacgtatttgtctaagcgcaaattctgaagaagttagcttgttcccg 29081680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 399 - 549
Target Start/End: Original strand, 29058575 - 29058727
Alignment:
Q  399 tgggacctattttagagttttggaggaatggtatggatatttaaaaaatgtagttgaatgatttaaataattgaaaagtgtgaagtaatata--atgtat 496  Q
    ||||||| |||||| | |||| || || ||||||| ||||||||| |||||  |||| ||||||||||||||| |||   | ||||||||||  || |||    
T  29058575 tgggacccattttaaaattttagaagagtggtatgaatatttaaagaatgtgattgagtgatttaaataattgtaaaaaataaagtaatatattatatat 29058674  T
Q  497 tatgtgggacccatttataccacccatatgggtggcatggatgtggttgctct 549  Q
    |||||  || || ||||||||| ||| ||   |||||||||||||| ||||||    
T  29058675 tatgtaagatccgtttataccatccaaataaatggcatggatgtggatgctct 29058727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 489 - 549
Target Start/End: Complemental strand, 7386351 - 7386291
Alignment:
Q  489 taatgtattatgtgggacccatttataccacccatatgggtggcatggatgtggttgctct 549  Q
    |||| |||||||||||| |||||||||||||||||||   || |||| |||||||||||||    
T  7386351 taatatattatgtgggatccatttataccacccatataaatgacatgaatgtggttgctct 7386291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 435 - 551
Target Start/End: Complemental strand, 30717518 - 30717402
Alignment:
Q  435 atatttaaaaaatgtagttgaatgatttaaataattgaaaagtgtgaagtaatataatgtattatgtgggacccatttataccacccatatgggtggcat 534  Q
    ||||||||||||||||  ||| | |||||||||||| |||||  | || ||||||||||||||   | ||  |||||||| ||| |||||| | ||| ||    
T  30717518 atatttaaaaaatgtaagtgagtaatttaaataattaaaaagcataaaataatataatgtattgaatagggtccatttattccatccatatagatggtat 30717419  T
Q  535 ggatgtggttgctctta 551  Q
    |||||||| ||||||||    
T  30717418 ggatgtgggtgctctta 30717402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 487 - 551
Target Start/End: Original strand, 26723252 - 26723317
Alignment:
Q  487 tataatgtattatgtgggacccatttataccacccatat-gggtggcatggatgtggttgctctta 551  Q
    ||||| |||||| ||||| || ||||||||||||||| | | ||||||||||||||| ||||||||    
T  26723252 tataaagtattacgtggggcctatttataccacccatgtagagtggcatggatgtgggtgctctta 26723317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 122; Significance: 3e-62; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 383 - 551
Target Start/End: Original strand, 52326968 - 52327136
Alignment:
Q  383 tatattgtaagataagtgggacctattttagagttttggaggaatggtatggatattta-aaaaatgtagttgaatgatttaaataattgaaaagtgtga 481  Q
    ||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  52326968 tatattgtaagattagtgggacctattttagagttttggag-agtggtatggatatttagaaaaatgtagttgagtgatttaaataattgaaaagtgtga 52327066  T
Q  482 agtaatataatgtattatgtgggacccatttataccacccatatgggtggcatggatgtggttgctctta 551  Q
    ||||||||||  ||||||||||||||||||||||| || |||||||||||||||||||||| ||||||||    
T  52327067 agtaatataaaatattatgtgggacccatttatactactcatatgggtggcatggatgtggctgctctta 52327136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 382 - 549
Target Start/End: Complemental strand, 780034 - 779867
Alignment:
Q  382 atatattgtaagataagtgggacctattttagagttttggaggaatggtatggatatttaaaaaatgtagttgaatgatttaaataattgaaaagtgtga 481  Q
    |||||||||||||||||||||||| |||||||| |||||||||| ||||||||||||||| ||||| ||||||| || |||||||||| ||||| |||||    
T  780034 atatattgtaagataagtgggacccattttagaattttggaggagtggtatggatatttagaaaatatagttgagtggtttaaataatggaaaaatgtga 779935  T
Q  482 agtaatataatgtattatgtgggacccatttataccacccatatgggtggcatggatgtggttgctct 549  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| ||||||    
T  779934 agtaatataatgtattatgtgagacccatttataccacccatatgggtggtatggatgtgggtgctct 779867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 387 - 549
Target Start/End: Complemental strand, 23560149 - 23559987
Alignment:
Q  387 ttgtaagataagtgggacctattttagagttttggaggaatggtatggatatttaaaaaatgtagttgaatgatttaaataattgaaaagtgtgaagtaa 486  Q
    ||||||||||||||||||| ||||||||||||| ||||| ||| ||||||||||| ||||||||||||| || |||||||||||| ||||||| ||||||    
T  23560149 ttgtaagataagtgggacccattttagagttttagaggagtggcatggatatttagaaaatgtagttgagtggtttaaataattggaaagtgtaaagtaa 23560050  T
Q  487 tataatgtattatgtgggacccatttataccacccatatgggtggcatggatgtggttgctct 549  Q
    | |||| ||||||||||| |||||||||||||||||| |||||||||||||||||| ||||||    
T  23560049 tgtaatatattatgtgggtcccatttataccacccatttgggtggcatggatgtgggtgctct 23559987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 385 - 549
Target Start/End: Complemental strand, 5415313 - 5415149
Alignment:
Q  385 tattgtaagataagtgggacctattttagagttttggaggaatggtatggatatttaaaaaatgtagttgaatgatttaaataattgaaaagtgtgaagt 484  Q
    ||||||||||||| |  |||| ||||||||||||| ||||| ||||||| ||||||| ||||||||||||| ||| |||||||||||  |||||| ||||    
T  5415313 tattgtaagataaataagacccattttagagttttagaggagtggtatgaatatttagaaaatgtagttgagtgagttaaataattgggaagtgtaaagt 5415214  T
Q  485 aatataatgtattatgtgggacccatttataccacccatatgggtggcatggatgtggttgctct 549  Q
    |||||||| ||||||||||  ||||||||||||| |||| |||||||||||||||||||||||||    
T  5415213 aatataatatattatgtggatcccatttataccatccatttgggtggcatggatgtggttgctct 5415149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 381 - 549
Target Start/End: Original strand, 2681065 - 2681232
Alignment:
Q  381 aatatattgtaagataagtgggacctattttagagttttggaggaatggtatggatatttaaaaaatgtagttgaatgatttaaataattgaaaagtgtg 480  Q
    ||||||||||||||| ||||||||| ||| || ||||||| | ||||||||||||| |||| || |||||||||| || |||||||||||||||||||||    
T  2681065 aatatattgtaagattagtgggacccattata-agttttgtaagaatggtatggatgtttagaagatgtagttgagtggtttaaataattgaaaagtgtg 2681163  T
Q  481 aagtaatataatgtattatgtgggacccatttataccacccatat-gggtggcatggatgtggttgctct 549  Q
    ||||||||||| ||||||  ||||||||||||||||||||||| | | ||||||||||||||| ||||||    
T  2681164 aagtaatataaagtatta-ctgggacccatttataccacccatgtagagtggcatggatgtgggtgctct 2681232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 387 - 549
Target Start/End: Complemental strand, 48263128 - 48262962
Alignment:
Q  387 ttgtaagataagtgggacctattttagagttttggaggaatggtatggatatttaaaaaatgtagtt-gaatgatttaaataattgaaaagtgtgaagta 485  Q
    |||||||||||||| |||| ||||||||||||| ||||| ||||||| ||||||| |||||||||||  ||||||||||||||||||||||||| |||||    
T  48263128 ttgtaagataagtgagacccattttagagttttagaggagtggtatgaatatttagaaaatgtagttaaaatgatttaaataattgaaaagtgtaaagta 48263029  T
Q  486 a---tataatgtattatgtgggacccatttataccacccatatgggtggcatggatgtggttgctct 549  Q
    |   |||||| ||||||||| | | ||||||||||| |||| |||||||||||||||||| ||||||    
T  48263028 atagtataatatattatgtgagtctcatttataccatccatttgggtggcatggatgtggatgctct 48262962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 397 - 549
Target Start/End: Original strand, 55875815 - 55875967
Alignment:
Q  397 agtgggacctattttagagttttggaggaatggtatggatatttaaaaaatgtagttgaatgatttaaataattgaaaagtgtgaagtaatataatgtat 496  Q
    ||||||||| ||||||||||||| || || ||||||| ||||||||||||||||||||| || ||||| ||||||| |  |||||||||||||||| |||    
T  55875815 agtgggacccattttagagttttagatgagtggtatgaatatttaaaaaatgtagttgagtggtttaagtaattgagagatgtgaagtaatataatttat 55875914  T
Q  497 tatgtgggacccatttataccacccatatgggtggcatggatgtggttgctct 549  Q
    |||||||||||||||||||| || || |||||||| |||||||||| ||||||    
T  55875915 tatgtgggacccatttatactacacacatgggtggtatggatgtggatgctct 55875967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 387 - 549
Target Start/End: Complemental strand, 9268465 - 9268304
Alignment:
Q  387 ttgtaagataagtgggacctattttagagttttggaggaatggtatggatatttaaaaaatgtagttgaatgatttaaataattgaaaagtgtgaagtaa 486  Q
    ||||||||| ||||||||| ||| || ||||||| | ||||||||||||| |||| ||||||||||||| || |||||||||||||||||||||||||||    
T  9268465 ttgtaagattagtgggacccattata-agttttgtaagaatggtatggatgtttagaaaatgtagttgagtggtttaaataattgaaaagtgtgaagtaa 9268367  T
Q  487 tataatgtattatgtgggacccatttataccacccatat-gggtggcatggatgtggttgctct 549  Q
    ||||| ||||||  ||||||||||||||||||||||| | | ||||||||||||||| ||||||    
T  9268366 tataaagtatta-ctgggacccatttataccacccatgtagagtggcatggatgtgggtgctct 9268304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 383 - 542
Target Start/End: Original strand, 7907367 - 7907523
Alignment:
Q  383 tatattgtaagataagtgggacctattttagagttttggaggaatggtatggatatttaaaaaatgtagttgaatgatttaaataattgaaaagtgtgaa 482  Q
    ||||||||||||| |||| || | |||||| ||||||||| || || |||||||||||| ||||||||||||| || |||||||||||| ||||||||||    
T  7907367 tatattgtaagattagtgagatccatttta-agttttggaagagtgatatggatatttagaaaatgtagttgagtggtttaaataattggaaagtgtgaa 7907465  T
Q  483 gtaatataatgtattatgtgggacccatttataccacccat-atgggtggcatggatgtgg 542  Q
    |   ||||| ||||||||||||||||||||||||||||||| | | |||||||||||||||    
T  7907466 g---tataaagtattatgtgggacccatttataccacccataaagagtggcatggatgtgg 7907523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 383 - 551
Target Start/End: Original strand, 41377341 - 41377509
Alignment:
Q  383 tatattgtaagataagtgggacctattttagagttttggaggaatggtatggatatttaaaaaatgtagttgaatgatttaaataattgaaaagtgtgaa 482  Q
    ||||||||||||| ||||||||| |||| ||||||||  | || | ||||| ||||||||||||||||||||| |  || |||||||||| ||||| |||    
T  41377341 tatattgtaagattagtgggacccatttaagagttttaaaagagtagtatgaatatttaaaaaatgtagttgagtagttaaaataattgagaagtgggaa 41377440  T
Q  483 gtaatataatgtattatgtgggacccatttataccacccatatgggtggcatggatgtggttgctctta 551  Q
    |||||||||| ||||||||  ||||||||||||| | |||||| |||| |||||| |||| ||||||||    
T  41377441 gtaatataatatattatgtaagacccatttatactatccatataggtgacatggaagtggatgctctta 41377509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 204 - 335
Target Start/End: Complemental strand, 23563689 - 23563558
Alignment:
Q  204 atatgggtagtatcacactaaccaatgctcttgtgtcataatatcatggataattggctttggaatagagtagtgaaactatacatggtagcaatgcatt 303  Q
    |||||||| ||||||||||  |||||||| ||||||||||| |||||||||||||| | ||| ||| ||||||| ||||||| |||||| | ||||||||    
T  23563689 atatgggtggtatcacactgcccaatgcttttgtgtcataagatcatggataattgacattgaaattgagtagttaaactatccatggtggtaatgcatt 23563590  T
Q  304 actacgttccttttcatgtaattgtcagattt 335  Q
    ||||| ||||||||| || |||||||||||||    
T  23563589 actaccttccttttcctgcaattgtcagattt 23563558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 397 - 551
Target Start/End: Complemental strand, 55876121 - 55875967
Alignment:
Q  397 agtgggacctattttagagttttggaggaatggtatggatatttaaaaaatgtagttgaatgatttaaataattgaaaagtgtgaagtaatataatgtat 496  Q
    ||||||||| ||| |||||||||||  ||  |||||||||||||| ||| |||||||||||  ||||||||||||| ||||||||||||||||||| |||    
T  55876121 agtgggaccaattgtagagttttgggtgaggggtatggatatttagaaagtgtagttgaatagtttaaataattgagaagtgtgaagtaatataatatat 55876022  T
Q  497 tatgtgggacccatttataccacccatatgggtggcatggatgtggttgctctta 551  Q
    || || ||  |||||||||||||| | || ||| | |||||||||| ||||||||    
T  55876021 taagtagggtccatttataccaccaaaataggtagtatggatgtggatgctctta 55875967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 394 - 551
Target Start/End: Original strand, 46381987 - 46382144
Alignment:
Q  394 ataagtgggacctattttagagttttggaggaatggtatggatatttaaaaaatgtagttgaatgatttaaataattgaaaagtgtgaagtaatataatg 493  Q
    |||||||||||| |||||| |||||| ||  | ||||||| |||||| |||||| |||| || || ||||||||||||| ||||||||| |||||||||     
T  46381987 ataagtgggacccattttaaagttttagataagtggtatgaatatttgaaaaatatagtggagtggtttaaataattgagaagtgtgaactaatataata 46382086  T
Q  494 tattatgtgggacccatttataccacccatatgggtggcatggatgtggttgctctta 551  Q
    ||||| || ||  |||||||||||||| |  |||||||||||||||||| ||||||||    
T  46382087 tattaagtagggtccatttataccaccaaattgggtggcatggatgtggatgctctta 46382144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 203 - 307
Target Start/End: Complemental strand, 48265391 - 48265287
Alignment:
Q  203 catatgggtagtatcacactaaccaatgctcttgtgtcataatatcatggataattggctttggaatagagtagtgaaactatacatggtagcaatgcat 302  Q
    ||||||||| ||||||||||  |||||||| ||||||||||| |||||||||||||||| ||| ||| ||||||| ||||||| |||||||| |||||||    
T  48265391 catatgggtggtatcacactgtccaatgcttttgtgtcataagatcatggataattggcattgaaattgagtagttaaactatccatggtagtaatgcat 48265292  T
Q  303 tacta 307  Q
    |||||    
T  48265291 tacta 48265287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 427 - 542
Target Start/End: Complemental strand, 2714317 - 2714202
Alignment:
Q  427 tggtatggatatttaaaaaatgtagttgaatgatttaaataattgaaaagtgtgaagtaatataatgtattatgtgggacccatttataccacccatatg 526  Q
    |||||| |||||||||||||| ||||| ||||||||||||||||| ||||| |||| |||||||| |||||| ||| || |||||||||| |||||| |     
T  2714317 tggtatcgatatttaaaaaatatagttaaatgatttaaataattggaaagtatgaaataatataaagtattacgtgagatccatttatacaacccatgta 2714218  T
Q  527 ggtggcatggatgtgg 542  Q
     |||||||||||||||    
T  2714217 agtggcatggatgtgg 2714202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 402 - 549
Target Start/End: Original strand, 38567945 - 38568092
Alignment:
Q  402 gacctattttagagttttggaggaatggtatggatatttaaaaaatgtagttgaatgatttaaataattgaaaagtgtgaagtaatataatgtattatgt 501  Q
    |||| |||||| |||||| ||  | ||||||| ||||||||||||||||||||| || ||||||||||||||||||  ||||||||||||| ||||  ||    
T  38567945 gacccattttaaagttttagaatagtggtatgaatatttaaaaaatgtagttgagtggtttaaataattgaaaagtaagaagtaatataatatattgagt 38568044  T
Q  502 gggacccatttataccacccatatgggtggcatggatgtggttgctct 549  Q
    | |  ||||| |||||||| || |  ||||||||||||||| ||||||    
T  38568045 gaggtccattcataccaccaatgtaagtggcatggatgtggatgctct 38568092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 385 - 551
Target Start/End: Original strand, 17476171 - 17476337
Alignment:
Q  385 tattgtaagataagtgggacctattttagagttttggaggaatggtatggatatttaaaaaatgtagttgaatgatttaaataattgaaaagtgtgaagt 484  Q
    |||||||| || ||||||| | |||||| | ||||||| || ||||||||||||||| ||||||||||||| |  | |||||||||| ||| |||||||     
T  17476171 tattgtaaaattagtgggatccattttaaaattttggatgagtggtatggatatttagaaaatgtagttgagttgtctaaataattggaaaatgtgaaga 17476270  T
Q  485 aatataatgtattatgtgggacccatttataccacccatatgggtggcatggatgtggttgctctta 551  Q
    |||||||| ||| | |||||  |||||||||||||| |  || |||| |||||||||| | ||||||    
T  17476271 aatataatatatcaagtggggtccatttataccaccaaattgagtggtatggatgtgggtactctta 17476337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 437 - 549
Target Start/End: Original strand, 30875381 - 30875493
Alignment:
Q  437 atttaaaaaatgtagttgaatgatttaaataattgaaaagtgtgaagtaatataatgtattatgtgggacccatttataccacccatatgggtggcatgg 536  Q
    ||||| ||||| ||||| | |||||||||||||||  |||| | || ||||||||||||||  ||||||| |||||||||||| |||||||  |||||||    
T  30875381 atttagaaaatatagtttagtgatttaaataattgggaagtttaaaataatataatgtattcagtgggactcatttataccacacatatggaaggcatgg 30875480  T
Q  537 atgtggttgctct 549  Q
    |||||| ||||||    
T  30875481 atgtgggtgctct 30875493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 384 - 455
Target Start/End: Original strand, 4974580 - 4974651
Alignment:
Q  384 atattgtaagataagtgggacctattttagagttttggaggaatggtatggatatttaaaaaatgtagttga 455  Q
    ||||||||||||||||| |||||||||||||||||| ||||| ||||||| ||||||| ||||| |||||||    
T  4974580 atattgtaagataagtgagacctattttagagtttttgaggagtggtatgaatatttagaaaatatagttga 4974651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 435 - 549
Target Start/End: Original strand, 19485791 - 19485908
Alignment:
Q  435 atatttaaaaaatgtagttgaatgatttaaataattgaaaagtgtgaagtaatataatgtatta---tgtgggacccatttataccacccatatgggtgg 531  Q
    ||||||| ||||||||  |||||| ||||||||||| |||||||| || |||||||||||||||    ||||   ||||||||||||||||||||| ||     
T  19485791 atatttagaaaatgtaagtgaatggtttaaataattaaaaagtgtaaaataatataatgtattaagtagtggagtccatttataccacccatatggatga 19485890  T
Q  532 catggatgtggttgctct 549  Q
    ||||||||||| ||||||    
T  19485891 catggatgtgggtgctct 19485908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 409 - 549
Target Start/End: Original strand, 30052355 - 30052496
Alignment:
Q  409 tttagagttttggaggaatggtatggatatttaaaaaatgtagttgaatgatttaaataattgaaaagtgtgaagtaata-taatgtattatgtgggacc 507  Q
    ||||||||||| || || | ||||||||||||||||||||||||||| || ||||||||||| |||| | |||||||||| | |  |||| ||||||  |    
T  30052355 tttagagttttagatgagtagtatggatatttaaaaaatgtagttgattggtttaaataattaaaaaatatgaagtaatatttaaatattgtgtggggtc 30052454  T
Q  508 catttataccacccatatgggtggcatggatgtggttgctct 549  Q
     |||||||| | | || ||||||| |||||||||| ||||||    
T  30052455 tatttatactatcaatgtgggtggtatggatgtggatgctct 30052496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 460 - 538
Target Start/End: Complemental strand, 43264516 - 43264438
Alignment:
Q  460 tttaaataattgaaaagtgtgaagtaatataatgtattatgtgggacccatttataccacccatatgggtggcatggat 538  Q
    ||||||||||||| ||||||||||||||||||| ||||| ||| |  ||||||||||||| |||||  ||| |||||||    
T  43264516 tttaaataattgagaagtgtgaagtaatataatatattaggtgaggtccatttataccactcatattagtgtcatggat 43264438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 430 - 551
Target Start/End: Complemental strand, 43355055 - 43354935
Alignment:
Q  430 tatggatatttaaaaaatgtagttgaatgatttaaataattgaaaagtgtgaagtaatataatgtattatgtgggacccatttataccacccatatgggt 529  Q
    |||| |||||||||||||||| |||| || |||||||||||| || |||| |||||||||||| ||||  ||||   | |||||||||| | |||||  |    
T  43355055 tatgaatatttaaaaaatgtaattgagtggtttaaataattg-aaggtgtaaagtaatataatatattgagtggagtctatttataccatcaatatgaat 43354957  T
Q  530 ggcatggatgtggttgctctta 551  Q
    | ||||||||||| ||||||||    
T  43354956 gtcatggatgtggatgctctta 43354935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 409 - 510
Target Start/End: Complemental strand, 34388913 - 34388812
Alignment:
Q  409 tttagagttttggaggaatggtatggatatttaaaaaatgtagttgaatgatttaaataattgaaaagtgtgaagtaatataatgtattatgtgggaccc 508  Q
    |||||| ||| ||| || || |||| ||||||| ||||||| ||| | || |||||||||||||||| ||| || ||||||||||||||  ||| |||||    
T  34388913 tttagaatttgggatgagtgatatgaatatttagaaaatgtggtttagtggtttaaataattgaaaaatgtaaaataatataatgtattcagtgagaccc 34388814  T
Q  509 at 510  Q
    ||    
T  34388813 at 34388812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 383 - 455
Target Start/End: Original strand, 17712591 - 17712662
Alignment:
Q  383 tatattgtaagataagtgggacctattttagagttttggaggaatggtatggatatttaaaaaatgtagttga 455  Q
    ||||| ||||||| ||||||| | |||||| |||||||||  | |||||||||||||||||||| ||| ||||    
T  17712591 tatatggtaagattagtgggatccatttta-agttttggaaaagtggtatggatatttaaaaaacgtaattga 17712662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 111; Significance: 1e-55; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 385 - 551
Target Start/End: Original strand, 56549 - 56715
Alignment:
Q  385 tattgtaagataagtgggacctattttagagttttggaggaatggtatggatatttaaaaaatgtagttgaatgatttaaataattgaaaagtgtgaagt 484  Q
    ||||||||||||||||||||| || |||||||||| ||||| ||||||||||||||| ||||||||||||| || ||||||||||||| |||||| ||||    
T  56549 tattgtaagataagtgggacccatattagagttttagaggagtggtatggatatttagaaaatgtagttgagtggtttaaataattgagaagtgtaaagt 56648  T
Q  485 aatataatgtattatgtgggacccatttataccacccatatgggtggcatggatgtggttgctctta 551  Q
    |||||||| ||||||||||| ||||||||||||| |||| ||| |||||||||||||||||||||||    
T  56649 aatataatatattatgtgggtcccatttataccatccatttggatggcatggatgtggttgctctta 56715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 106; Significance: 1e-52; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 400 - 549
Target Start/End: Complemental strand, 15877879 - 15877730
Alignment:
Q  400 gggacctattttagagttttggaggaatggtatggatatttaaaaaatgtagttgaatgatttaaataattgaaaagtgtgaagtaatataatgtattat 499  Q
    |||||| ||||||||||||||||||| ||||||||||||||| ||||| ||||||| || |||||||||| ||||| |||||||||||||||||||||||    
T  15877879 gggacccattttagagttttggaggagtggtatggatatttagaaaatatagttgagtggtttaaataatggaaaaatgtgaagtaatataatgtattat 15877780  T
Q  500 gtgggacccatttataccacccatatgggtggcatggatgtggttgctct 549  Q
    |||||||||||||||||||||||||||||||| ||||||| || ||||||    
T  15877779 gtgggacccatttataccacccatatgggtggtatggatgggggtgctct 15877730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 387 - 551
Target Start/End: Complemental strand, 53464428 - 53464264
Alignment:
Q  387 ttgtaagataagtgggacctattttagagttttggaggaatggtatggatatttaaaaaatgtagttgaatgatttaaataattgaaaagtgtgaagtaa 486  Q
    ||||||||||||||||||| ||||||||||||| | ||| ||||||||||||||| ||||||||||||| || ||||||||| |  ||||||| ||||||    
T  53464428 ttgtaagataagtgggacccattttagagttttaggggagtggtatggatatttagaaaatgtagttgagtggtttaaataactagaaagtgtaaagtaa 53464329  T
Q  487 tataatgtattatgtgggacccatttataccacccatatgggtggcatggatgtggttgctctta 551  Q
    ||||||||| |||||||| |||||||||||||||||| |||||||||||||||||| ||||||||    
T  53464328 tataatgtaatatgtgggtcccatttataccacccatttgggtggcatggatgtgggtgctctta 53464264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 387 - 549
Target Start/End: Complemental strand, 52314018 - 52313856
Alignment:
Q  387 ttgtaagataagtgggacctattttagagttttggaggaatggtatggatatttaaaaaatgtagttgaatgatttaaataattgaaaagtgtgaagtaa 486  Q
    ||||||||||||||||||| ||||||||||||| | ||| ||||||||||||||| ||||||||||||| || ||||||||| |  ||||||| ||||||    
T  52314018 ttgtaagataagtgggacccattttagagttttaggggagtggtatggatatttagaaaatgtagttgagtggtttaaataactagaaagtgtaaagtaa 52313919  T
Q  487 tataatgtattatgtgggacccatttataccacccatatgggtggcatggatgtggttgctct 549  Q
    ||||||||| |||||||| |||||||||||||||||| |||||||||||||||||| ||||||    
T  52313918 tataatgtaatatgtgggtcccatttataccacccatttgggtggcatggatgtgggtgctct 52313856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 387 - 526
Target Start/End: Complemental strand, 35424267 - 35424128
Alignment:
Q  387 ttgtaagataagtgggacctattttagagttttggaggaatggtatggatatttaaaaaatgtagttgaatgatttaaataattgaaaagtgtgaagtaa 486  Q
    |||||||||||||| |||| ||||||||||||| || |  ||||||||||||||| ||||||||||||| || |||||||||||||||| ||||||||||    
T  35424267 ttgtaagataagtgagacccattttagagttttagaagggtggtatggatatttagaaaatgtagttgagtggtttaaataattgaaaaatgtgaagtaa 35424168  T
Q  487 tataatgtattatgtgggacccatttataccacccatatg 526  Q
    |||||||||||||||| |||||||||||||||| ||||||    
T  35424167 tataatgtattatgtgagacccatttataccactcatatg 35424128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 383 - 541
Target Start/End: Complemental strand, 35496246 - 35496088
Alignment:
Q  383 tatattgtaagataagtgggacctattttagagttttggaggaatggtatggatatttaaaaaatgtagttgaatgatttaaataattgaaaagtgtgaa 482  Q
    ||||||| ||||  |||||||| ||||||||||| || || || | ||||||| ||| |||||||||||||||||||||||||||||||| |||||||||    
T  35496246 tatattgcaagactagtgggacttattttagagtattagaagagtagtatggaaattaaaaaaatgtagttgaatgatttaaataattgagaagtgtgaa 35496147  T
Q  483 gtaatataatgtattatgtgggacccatttataccacccatatgggtggcatggatgtg 541  Q
    |||||||||| |||||||| ||||||||||||||||| ||||| ||||||| |||||||    
T  35496146 gtaatataatatattatgtaggacccatttataccactcatataggtggcaaggatgtg 35496088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 397 - 531
Target Start/End: Original strand, 49644337 - 49644471
Alignment:
Q  397 agtgggacctattttagagttttggaggaatggtatggatatttaaaaaatgtagttgaatgatttaaataattgaaaagtgtgaagtaatataatgtat 496  Q
    ||||||||| |||||||||||||||| || ||| |||||||||| |||||||||||||| || ||||||||||||| ||||||||||||||||||| |||    
T  49644337 agtgggacccattttagagttttggatgagtggcatggatatttgaaaaatgtagttgagtggtttaaataattgagaagtgtgaagtaatataatatat 49644436  T
Q  497 tatgtgggacccatttataccacccatatgggtgg 531  Q
    || |||||  ||||||| |||||||||||||||||    
T  49644437 taagtggggtccatttaaaccacccatatgggtgg 49644471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 387 - 536
Target Start/End: Complemental strand, 1995711 - 1995562
Alignment:
Q  387 ttgtaagataagtgggacctattttagagttttggaggaatggtatggatatttaaaaaatgtagttgaatgatttaaataattgaaaagtgtgaagtaa 486  Q
    ||||||||||| || |||   ||||||||||||  |||| ||||||||||||||| ||||||||||| | || ||||||||||||  |||||||||||||    
T  1995711 ttgtaagataaatgagactcgttttagagttttaaaggagtggtatggatatttagaaaatgtagttaagtggtttaaataattgggaagtgtgaagtaa 1995612  T
Q  487 tataatgtattatgtgggacccatttataccacccatatgggtggcatgg 536  Q
    |||||||||||||||||||||||||||||||| || |||||||| |||||    
T  1995611 tataatgtattatgtgggacccatttataccatccgtatgggtgacatgg 1995562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 397 - 542
Target Start/End: Original strand, 36177187 - 36177332
Alignment:
Q  397 agtgggacctattttagagttttggaggaatggtatggatatttaaaaaatgtagttgaatgatttaaataattgaaaagtgtgaagtaatataatgtat 496  Q
    ||||||| | |||||||||||||  | || ||||||| ||||||||||||||||| ||| || || ||||||||| |||||||||||||||||||| |||    
T  36177187 agtgggatccattttagagttttaaatgagtggtatgaatatttaaaaaatgtagatgagtggttcaaataattggaaagtgtgaagtaatataatctat 36177286  T
Q  497 tatgtgggacccatttataccacccatatgggtggcatggatgtgg 542  Q
    |||||||||||||||||||||| |||||| ||||||||| ||||||    
T  36177287 tatgtgggacccatttataccatccatataggtggcatgaatgtgg 36177332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 175 - 381
Target Start/End: Complemental strand, 53465066 - 53464858
Alignment:
Q  175 gctatttagagcatacatattgcctgtccatatgggtagtatcacactaaccaatgctcttgtgtcataatatcatggataattggctttggaatagagt 274  Q
    |||| ||||||||| || || |||||  ||||||||| |||||||| |  |||||||| ||||||||||| |||||| ||||||||| ||| ||| ||||    
T  53465066 gctacttagagcatgcacatcgcctgcacatatgggtggtatcacattgcccaatgcttttgtgtcataagatcatgaataattggcattgaaattgagt 53464967  T
Q  275 agtgaaactatacatggtagcaatgcattactacgttccttttcatgtaattgtcagattttatagatattttgtaatac-tttgag-ttttatttcttt 372  Q
    ||| ||||||| |||||||| ||||||||||||| ||||||||| || ||||||| |||||| |  | |||||||| ||| |||||| |||| |||||||    
T  53464966 agttaaactatccatggtagtaatgcattactaccttccttttcctgcaattgtctgattttgtgcacattttgtattacttttgagtttttttttcttt 53464867  T
Q  373 taattaata 381  Q
    |||||||||    
T  53464866 taattaata 53464858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 182 - 381
Target Start/End: Complemental strand, 52314649 - 52314448
Alignment:
Q  182 agagcatacatattgcctgtccatatgggtagtatcacactaaccaatgctcttgtgtcataatatcatggataattggctttggaatagagtagtgaaa 281  Q
    ||||||| || || |||||  ||||||||| |||||||| |  |||||||| ||||||||||| |||||| ||||||||| ||| ||| ||||||| |||    
T  52314649 agagcatgcacatcgcctgcacatatgggtggtatcacattgcccaatgcttttgtgtcataagatcatgaataattggcattgaaattgagtagttaaa 52314550  T
Q  282 ctatacatggtagcaatgcattactacgttccttttcatgtaattgtcagattttatagatattttgtaatac-tttgag-ttttatttcttttaattaa 379  Q
    |||| |||||||| ||||||||||||| ||||||||| || ||||||| |||||| |  | |||||||| ||| |||||| |||| ||||||||||||||    
T  52314549 ctatccatggtagtaatgcattactaccttccttttcctgcaattgtctgattttgtgcacattttgtattacttttgagtttttttttcttttaattaa 52314450  T
Q  380 ta 381  Q
    ||    
T  52314449 ta 52314448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 385 - 492
Target Start/End: Complemental strand, 11467337 - 11467230
Alignment:
Q  385 tattgtaagataagtgggacctattttagagttttggaggaatggtatggatatttaaaaaatgtagttgaatgatttaaataattgaaaagtgtgaagt 484  Q
    |||||||||||||||| |||| |||||||| |||| ||||| || |||||||||||| ||||||||||||| || ||||||||||||| |||||||||||    
T  11467337 tattgtaagataagtgagacccattttagaattttagaggagtgatatggatatttagaaaatgtagttgattggtttaaataattgagaagtgtgaagt 11467238  T
Q  485 aatataat 492  Q
    ||||||||    
T  11467237 aatataat 11467230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 381 - 523
Target Start/End: Complemental strand, 40793312 - 40793171
Alignment:
Q  381 aatatattgtaagataagtgggacctattttagagttttggaggaatggtatggatatttaaaaaatgtagttgaatgatttaaataattgaaaagtgtg 480  Q
    |||||||| |||||| ||||||| | ||| || ||||||| | || || |||| ||||||| ||||||||||||| || ||||||||||||||||||| |    
T  40793312 aatatattataagattagtgggatccattgta-agttttgtaagagtgatatgaatatttataaaatgtagttgagtggtttaaataattgaaaagtgag 40793214  T
Q  481 aagtaatataatgtattatgtgggacccatttataccacccat 523  Q
    ||||||||||| |||||| |||| | |||||||||||||||||    
T  40793213 aagtaatataaagtattacgtggaatccatttataccacccat 40793171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 461 - 549
Target Start/End: Original strand, 7352575 - 7352663
Alignment:
Q  461 ttaaataattgaaaagtgtgaagtaatataatgtattatgtgggacccatttataccacccatatgggtggcatggatgtggttgctct 549  Q
    |||||||||||  |||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||| ||||||    
T  7352575 ttaaataattgggaagtgtgaggtaatataatgtattatgtgggacccgtttataccacccaaatgggtgacatggatgtggatgctct 7352663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 397 - 520
Target Start/End: Complemental strand, 28939798 - 28939675
Alignment:
Q  397 agtgggacctattttagagttttggaggaatggtatggatatttaaaaaatgtagttgaatgatttaaataattgaaaagtgtgaagtaatataatgtat 496  Q
    ||||||||| ||| |||||||||||| || || |||| ||||||| ||||||||||||| |  ||||||||||||| ||||||||||||||||||| |||    
T  28939798 agtgggaccaattgtagagttttggatgagtgatatgaatatttagaaaatgtagttgagtagtttaaataattgagaagtgtgaagtaatataatatat 28939699  T
Q  497 tatgtgggacccatttataccacc 520  Q
    || |||||  | ||||||||||||    
T  28939698 taggtggggtctatttataccacc 28939675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 398 - 551
Target Start/End: Complemental strand, 29096232 - 29096078
Alignment:
Q  398 gtgggacctattttagagttttggaggaatggtatggatatttaaaaaatgtagttgaatgatttaaataattgaaaagtgtgaagtaata-taatgtat 496  Q
    |||||||||| |||||||||||  | || ||||||| ||||||||| ||||||||||| || |||||||||||||||| |||||||||||| | || |||    
T  29096232 gtgggacctaatttagagttttaaatgagtggtatgaatatttaaataatgtagttgagtggtttaaataattgaaaaatgtgaagtaatagttatatat 29096133  T
Q  497 tatgtgggacccatttataccacccatatgggtggcatggatgtggttgctctta 551  Q
    | ||||||  |||||||||||| | || ||||||   ||||||||| ||||||||    
T  29096132 tgtgtggggtccatttataccatcaatgtgggtgatgtggatgtggatgctctta 29096078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 392 - 520
Target Start/End: Complemental strand, 35846284 - 35846158
Alignment:
Q  392 agataagtgggacctattttagagttttggaggaatggtatggatatttaaaaaatgtagttgaatgatttaaataattgaaaagtgtgaagtaatataa 491  Q
    |||| ||||||||| ||| || ||||||| | || ||||| ||||||||| |||||||||||||||| |||||||||||||||||||| || ||||||||    
T  35846284 agattagtgggacccattgta-agttttgtaagagtggta-ggatatttagaaaatgtagttgaatggtttaaataattgaaaagtgtaaaataatataa 35846187  T
Q  492 tgtattatgtgggacccatttataccacc 520  Q
     |||||| ||| ||||||||||| |||||    
T  35846186 agtattacgtgagacccatttattccacc 35846158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 413 - 525
Target Start/End: Original strand, 45266862 - 45266975
Alignment:
Q  413 gagttttggaggaatggtatggatatttaaaaaatg-tagttgaatgatttaaataattgaaaagtgtgaagtaatataatgtattatgtgggacccatt 511  Q
    |||||||||| |  ||||||| ||||||| |||||| ||||| | || ||||||| ||||| ||||||||| ||||||||||||||  ||| ||||||||    
T  45266862 gagttttggatgggtggtatgaatatttagaaaatgctagtttagtggtttaaatgattgagaagtgtgaaataatataatgtattcggtgtgacccatt 45266961  T
Q  512 tataccacccatat 525  Q
    |||||||| |||||    
T  45266962 tataccacacatat 45266975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 398 - 541
Target Start/End: Complemental strand, 41031252 - 41031109
Alignment:
Q  398 gtgggacctattttagagttttggaggaatggtatggatatttaaaaaatgtagttgaatgatttaaataattgaaaagtgtgaagtaatataatgtatt 497  Q
    |||||||| | ||||||||||||||    ||||||| ||||||| ||||| ||||| |||  ||| |||||||  ||||| | || ||||||||||||||    
T  41031252 gtgggacccaatttagagttttggattggtggtatgaatatttagaaaatctagtttaatagtttcaataattagaaagtataaaataatataatgtatt 41031153  T
Q  498 atgtgggacccatttataccacccatatgggtggcatggatgtg 541  Q
      || |||| |||||||| ||||||||||  |||||||||||||    
T  41031152 cagtaggactcatttatagcacccatatgaatggcatggatgtg 41031109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 407 - 519
Target Start/End: Complemental strand, 49787057 - 49786945
Alignment:
Q  407 attttagagttttggaggaatggtatggatatttaaaaaatgtagttgaatgatttaaataattgaaaagtgtgaagtaatataatgtattatgtgggac 506  Q
    |||||| |||||| || || ||||||| ||||||| ||||| ||||||| || ||||||||||||| | ||  ||| ||||||||| |||||| || | |    
T  49787057 attttaaagttttagatgagtggtatgaatatttataaaatatagttgagtggtttaaataattgagatgtaagaaataatataatatattatatgagtc 49786958  T
Q  507 ccatttataccac 519  Q
    |||||||||||||    
T  49786957 ccatttataccac 49786945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 383 - 474
Target Start/End: Original strand, 7352079 - 7352170
Alignment:
Q  383 tatattgtaagataagtgggacctattttagagttttggaggaatggtatggatatttaaaaaatgtagttgaatgatttaaataattgaaa 474  Q
    |||| ||| |||| ||||||||| ||||||||||||   | |  ||||||| |||||||||||||||||||||||| |||||||||| ||||    
T  7352079 tatactgtgagattagtgggacccattttagagtttataatgggtggtatgaatatttaaaaaatgtagttgaatggtttaaataatggaaa 7352170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 409 - 497
Target Start/End: Original strand, 14898445 - 14898533
Alignment:
Q  409 tttagagttttggaggaatggtatggatatttaaaaaatgtagttgaatgatttaaataattgaaaagtgtgaagtaatataatgtatt 497  Q
    |||||||||||| |  | ||||||| ||||||| ||||||||||| | || |||||| ||||||||| ||| || ||||||||||||||    
T  14898445 tttagagttttgaataagtggtatgaatatttagaaaatgtagtttagtggtttaaacaattgaaaaatgtaaaataatataatgtatt 14898533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 487 - 549
Target Start/End: Complemental strand, 11466814 - 11466752
Alignment:
Q  487 tataatgtattatgtgggacccatttataccacccatatgggtggcatggatgtggttgctct 549  Q
    |||||| ||||||||||| |  ||||||||||||||| | |||||||||||||| ||||||||    
T  11466814 tataatatattatgtgggtcatatttataccacccatttaggtggcatggatgtagttgctct 11466752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 426 - 490
Target Start/End: Complemental strand, 42486158 - 42486094
Alignment:
Q  426 atggtatggatatttaaaaaatgtagttgaatgatttaaataattgaaaagtgtgaagtaatata 490  Q
    |||||||| | |||| |||||||||||||||  |||||||||||||| | |||| ||||||||||    
T  42486158 atggtatgaacattttaaaaatgtagttgaaatatttaaataattgagatgtgtaaagtaatata 42486094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 407 - 544
Target Start/End: Original strand, 4489830 - 4489967
Alignment:
Q  407 attttagagttttggaggaatggtatggatatttaaaaaatgtagttgaatgatttaaataattgaaaagtgtgaagtaatataatgtattatgtgggac 506  Q
    |||||||||||||  | || ||||||  ||||||| ||||| || |||| || | |||||||||| ||  | | || ||||||||| |||||| || | |    
T  4489830 attttagagttttaaatgagtggtataaatatttataaaatataattgagtggtataaataattggaatatataaaataatataatatattatatgtgtc 4489929  T
Q  507 ccatttataccacccatatgggtggcatggatgtggtt 544  Q
    |||||||||| | ||||||  ||| |||||||||||||    
T  4489930 ccatttatactatccatataagtgacatggatgtggtt 4489967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 407 - 492
Target Start/End: Complemental strand, 28999473 - 28999388
Alignment:
Q  407 attttagagttttggaggaatggtatggatatttaaaaaatgtagttgaatgatttaaataattgaaaagtgtgaagtaatataat 492  Q
    |||||||||||||||| | ||||| || ||||| | ||||||| ||| |||  ||||||||||||| || | |||| |||||||||    
T  28999473 attttagagttttggatggatggtgtgaatattcataaaatgtggttcaattttttaaataattgagaaatatgaaataatataat 28999388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 100; Significance: 4e-49; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 383 - 549
Target Start/End: Original strand, 48252847 - 48253013
Alignment:
Q  383 tatattgtaagataagtgggacctattttagagttttggaggaatggtatggatattta-aaaaatgtagttgaatgatttaaataattgaaaagtgtga 481  Q
    ||||||| ||||| ||||| ||||||||||||||||||||| | ||||||||||||||| |||||||||||||| || |||||||||||| |||||||||    
T  48252847 tatattggaagattagtggtacctattttagagttttggag-agtggtatggatatttagaaaaatgtagttgagtggtttaaataattggaaagtgtga 48252945  T
Q  482 agtaatataatgtattatgtgggacccatttataccacccatatgggtggcatggatgtggttgctct 549  Q
    ||||||||||  |||||| |||||||||||||||| || |||||||||||||||||||||| ||||||    
T  48252946 agtaatataaaatattatatgggacccatttatactactcatatgggtggcatggatgtgggtgctct 48253013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 407 - 549
Target Start/End: Original strand, 44396371 - 44396513
Alignment:
Q  407 attttagagttttggaggaatggtatggatatttaaaaaatgtagttgaatgatttaaataattgaaaagtgtgaagtaatataatgtattatgtgggac 506  Q
    ||||||||||||| ||||| ||||||| ||||||| ||||||||||||| ||  |||||||||||  |||||| |||||||||||| ||||||||||  |    
T  44396371 attttagagttttagaggagtggtatgaatatttagaaaatgtagttgagtgggttaaataattgggaagtgtaaagtaatataatatattatgtggatc 44396470  T
Q  507 ccatttataccacccatatgggtggcatggatgtggttgctct 549  Q
    |||||||||||| |||| |||||||||||||||||||||||||    
T  44396471 ccatttataccatccatttgggtggcatggatgtggttgctct 44396513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 383 - 551
Target Start/End: Complemental strand, 49080903 - 49080736
Alignment:
Q  383 tatattgtaagataagtgggacctattttagagttttggaggaatggtatggatatttaaaaaatgtagttgaatgatttaaataattgaaaagtgtgaa 482  Q
    ||||||||||||| | ||||||| |||||||||| || || || | |||| |||||||||||||||||||  | || |||||||||||||||||||||||    
T  49080903 tatattgtaagattaatgggacccattttagagtattagaagattagtattgatatttaaaaaatgtagta-agtggtttaaataattgaaaagtgtgaa 49080805  T
Q  483 gtaatataatgtattatgtgggacccatttataccacccatatgggtggcatggatgtggttgctctta 551  Q
    |||||||||| ||||||||  ||||||||||||| || ||||||| || ||||||||||| ||||||||    
T  49080804 gtaatataatatattatgtaagacccatttatacaactcatatggatgacatggatgtgggtgctctta 49080736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 401 - 548
Target Start/End: Original strand, 36725768 - 36725915
Alignment:
Q  401 ggacctattttagagttttggaggaatggtatggatatttaaaaaatgtagttgaatgatttaaataattgaaaagtgtgaagtaatataatgtattatg 500  Q
    ||||| ||||||||||||| || |||||||||| ||||||| ||| ||||||||| || ||||||||||||| |||||| || |||||||| | |||| |    
T  36725768 ggacccattttagagtttttgatgaatggtatgaatatttagaaattgtagttgagtggtttaaataattgagaagtgtaaaataatataaagaattaag 36725867  T
Q  501 tgggacccatttataccacccatatgggtggcatggatgtggttgctc 548  Q
    ||||| ||||||||||||||||| || |||| |||||||||| |||||    
T  36725868 tgggatccatttataccacccatgtgagtggtatggatgtggatgctc 36725915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 383 - 542
Target Start/End: Complemental strand, 32485587 - 32485437
Alignment:
Q  383 tatattgtaagataagtgggacctattttagagttttggaggaatggtatggatatttaaaaaatgtagttgaatgatttaaataattgaaaagtgtgaa 482  Q
    |||| |||| ||||||||||||| ||||||||||||||||||| ||||||||||||||| | ||          || ||||||||||| | ||| |||||    
T  32485587 tatagtgtacgataagtgggacccattttagagttttggaggagtggtatggatatttagataag---------tggtttaaataattaagaagcgtgaa 32485497  T
Q  483 gtaatataatgtattatgtgggacccatttataccacccatatgggtggcatggatgtgg 542  Q
    ||||||||||||||||||||||||||||| |||||||| ||||| |||| ||||||||||    
T  32485496 gtaatataatgtattatgtgggacccattgataccaccgatatgagtggtatggatgtgg 32485437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 398 - 539
Target Start/End: Original strand, 49081212 - 49081352
Alignment:
Q  398 gtgggacctattttagagttttggaggaatggtatggatatttaaaaaatgtagttgaatgatttaaataattgaaaagtgtgaagtaatataatgtatt 497  Q
    ||||||||||||| | |||||| || || ||||||  ||||||| ||||||||| ||||||||||||||||||||||| | | || ||||||||||||||    
T  49081212 gtgggacctatttaa-agttttagatgagtggtataaatatttagaaaatgtagatgaatgatttaaataattgaaaaatataaaataatataatgtatt 49081310  T
Q  498 atgtgggacccatttataccacccatatgggtggcatggatg 539  Q
    || || ||||||||||||||| | |||||||||| |||||||    
T  49081311 atatgagacccatttataccatctatatgggtggtatggatg 49081352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 399 - 518
Target Start/End: Original strand, 43692526 - 43692645
Alignment:
Q  399 tgggacctattttagagttttggaggaatggtatggatatttaaaaaatgtagttgaatgatttaaataattgaaaagtgtgaagtaatataatgtatta 498  Q
    ||||||| |||||| |||||| || || ||||||  ||||||||||||| ||| ||| || ||||||||||||| ||||||||| |||||||||||||||    
T  43692526 tgggacccattttaaagttttagaagagtggtataaatatttaaaaaatttagatgagtggtttaaataattgagaagtgtgaaataatataatgtatta 43692625  T
Q  499 tgtgggacccatttatacca 518  Q
    ||||||||| ||||||||||    
T  43692626 tgtgggacctatttatacca 43692645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 427 - 520
Target Start/End: Complemental strand, 8404841 - 8404748
Alignment:
Q  427 tggtatggatatttaaaaaatgtagttgaatgatttaaataattgaaaagtgtgaagtaatataatgtattatgtgggacccatttataccacc 520  Q
    |||| ||||||||||||||||||| |||| || |||||||||||| |||||||||| |||||||| |||||| ||||||||||||||| |||||    
T  8404841 tggtgtggatatttaaaaaatgtaattgagtggtttaaataattggaaagtgtgaaataatataaagtattacgtgggacccatttattccacc 8404748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 383 - 520
Target Start/End: Original strand, 43598785 - 43598922
Alignment:
Q  383 tatattgtaagataagtgggacctattttagagttttggaggaatggtatggatatttaaaaaatgtagttgaatgatttaaataattgaaaagtgtgaa 482  Q
    |||||||| | ||||||| |||  |||||| |||||| || || ||||||| |||||| |||||| ||||||| || ||||||||||||| |||||||||    
T  43598785 tatattgtgaaataagtgagactcattttaaagttttagatgagtggtatgaatatttgaaaaatatagttgagtggtttaaataattgagaagtgtgaa 43598884  T
Q  483 gtaatataatgtattatgtgggacccatttataccacc 520  Q
     ||||||||| ||||| || ||  ||||||||||||||    
T  43598885 ctaatataatatattaagtagggtccatttataccacc 43598922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 411 - 503
Target Start/End: Complemental strand, 8099733 - 8099641
Alignment:
Q  411 tagagttttggaggaatggtatggatatttaaaaaatgtagttgaatgatttaaataattgaaaagtgtgaagtaatataatgtattatgtgg 503  Q
    |||||||||||| || | ||||  ||||||||||||||||||||||| |||||||  ||| ||||||||||||||||||||| ||||| ||||    
T  8099733 tagagttttggatgagttgtataaatatttaaaaaatgtagttgaattatttaaaatattcaaaagtgtgaagtaatataatatattaagtgg 8099641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 401 - 492
Target Start/End: Complemental strand, 38994909 - 38994818
Alignment:
Q  401 ggacctattttagagttttggaggaatggtatggatatttaaaaaatgtagttgaatgatttaaataattgaaaagtgtgaagtaatataat 492  Q
    ||||| |||||| | ||||||| || | |||||||||||| ||||||||| |||||| ||||||| |||||| |||| ||||||||||||||    
T  38994909 ggacccattttaaaattttggatgagttgtatggatatttcaaaaatgtaattgaattatttaaaaaattgacaagtatgaagtaatataat 38994818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 398 - 549
Target Start/End: Complemental strand, 38346530 - 38346378
Alignment:
Q  398 gtgggacctattttagagttttggaggaatggtatggatatttaaaaaatgtagttgaatgatttaaataattgaaaagtgtgaagtaata-taatgtat 496  Q
    |||||||| | |||| |||||| || || | ||||  ||||||||||||||||||||| || ||||||||||| |||| | |||||||||| | || |||    
T  38346530 gtgggacccaatttaaagttttagatgagttgtataaatatttaaaaaatgtagttgagtggtttaaataattaaaaaatatgaagtaatatttatatat 38346431  T
Q  497 tatgtgggacccatttataccacccatatgggtggcatggatgtggttgctct 549  Q
    ||| ||||  |||||||||||| | || ||| ||  |||||||||| ||||||    
T  38346430 tatatggggtccatttataccatcaatgtggatgatatggatgtggatgctct 38346378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 381 - 497
Target Start/End: Original strand, 40160299 - 40160415
Alignment:
Q  381 aatatattgtaagataagtgggacctattttagagttttggaggaatggtatggatatttaaaaaatgtagttgaatgatttaaataattgaaaagtgtg 480  Q
    |||| |||||||||| ||||||| | |||||| | ||||||| |  | ||||||||||||||||| | ||||||| |  ||||||||||||| ||| ||     
T  40160299 aataaattgtaagattagtgggatccattttaaaattttggatgggtagtatggatatttaaaaattttagttgagttgtttaaataattgagaagcgtt 40160398  T
Q  481 aagtaatataatgtatt 497  Q
    |||||||||||| ||||    
T  40160399 aagtaatataatatatt 40160415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 406 - 549
Target Start/End: Complemental strand, 29681524 - 29681381
Alignment:
Q  406 tattttagagttttggaggaatggtatggatatttaaaaaatgtagttgaatgatttaaataattgaaaagtgtgaagtaatataatgtattatgtggga 505  Q
    ||||||||| |||| || || || |||||||||||| ||||||||||| | || || ||||||||  ||  | | || ||||||||| ||||||||| |     
T  29681524 tattttagaattttagatgagtgatatggatatttataaaatgtagttaagtggttcaaataatttgaatatataaaataatataatatattatgtgagt 29681425  T
Q  506 cccatttataccacccatatgggtggcatggatgtggttgctct 549  Q
    | ||||||||  ||  ||||||||||||||||||| ||||||||    
T  29681424 ctcatttataatacttatatgggtggcatggatgtagttgctct 29681381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 416 - 490
Target Start/End: Original strand, 23869931 - 23870005
Alignment:
Q  416 ttttggaggaatggtatggatatttaaaaaatgtagttgaatgatttaaataattgaaaagtgtgaagtaatata 490  Q
    ||||||| || ||||||||||||||| ||||| ||||| | |  |||||| ||||||||||||||||||||||||    
T  23869931 ttttggatgagtggtatggatatttagaaaatatagttaagtagtttaaaaaattgaaaagtgtgaagtaatata 23870005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 430 - 519
Target Start/End: Complemental strand, 22790524 - 22790435
Alignment:
Q  430 tatggatatttaaaaaatgtagttgaatgatttaaataattgaaaagtgtgaagtaatataatgtattatgtgggacccatttataccac 519  Q
    ||||||||||  ||||||||||||||||  ||||||||||||||||| || || ||||| ||  |||| |||| || |||||||||||||    
T  22790524 tatggatattagaaaaatgtagttgaattgtttaaataattgaaaagcgtaaaataatacaaaatattgtgtgagatccatttataccac 22790435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 424 - 491
Target Start/End: Complemental strand, 12879352 - 12879285
Alignment:
Q  424 gaatggtatggatatttaaaaaatgtagttgaatgatttaaataattgaaaagtgtgaagtaatataa 491  Q
    |||||||||| ||||||| ||||| ||||||  |  ||||||||||||| ||||||||||||||||||    
T  12879352 gaatggtatgaatatttagaaaatatagttgtgttgtttaaataattgagaagtgtgaagtaatataa 12879285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 477 - 552
Target Start/End: Complemental strand, 23772892 - 23772818
Alignment:
Q  477 tgtgaagtaatataatgtattatgtgggacccatttataccacccatatgggtggcatggatgtggttgctcttat 552  Q
    |||||| ||||||||| ||||| ||||| || ||||||||||||||||||  || ||||||||||| |||||||||    
T  23772892 tgtgaaataatataatatattaagtgggtcc-atttataccacccatatgaatgacatggatgtggatgctcttat 23772818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 398 - 497
Target Start/End: Complemental strand, 36118156 - 36118058
Alignment:
Q  398 gtgggacctattttagagttttggaggaatggtatggatatttaaaaaatgtagttgaatgatttaaataattgaaaagtgtgaagtaatataatgtatt 497  Q
    |||||||| |||||| ||||||| || | | ||||| ||||||| |||||||| |||| || |||||||||| || |||||| || ||||||||||||||    
T  36118156 gtgggacccattttaaagttttgaag-agtagtatgaatatttagaaaatgtaattgagtggtttaaataatagagaagtgttaaataatataatgtatt 36118058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 460 - 551
Target Start/End: Original strand, 46700889 - 46700980
Alignment:
Q  460 tttaaataattgaaaagtgtgaagtaatataatgtattatgtgggacccatttataccacccatatgggtggcatggatgtggttgctctta 551  Q
    ||||||||||||| ||||||||| || ||||| | |||| ||| || |||||||||| || ||||||| || ||||||||||  ||||||||    
T  46700889 tttaaataattgagaagtgtgaaatagtataaagaattaagtgagagccatttatacaactcatatggatgacatggatgtgtatgctctta 46700980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 460 - 538
Target Start/End: Complemental strand, 41159427 - 41159349
Alignment:
Q  460 tttaaataattgaaaagtgtgaagtaatataatgtattatgtgggacccatttataccacccatatgggtggcatggat 538  Q
    |||||||||||| |||||||||| ||||||||| ||||  ||||   |||||||||||||| |  ||||||||||||||    
T  41159427 tttaaataattggaaagtgtgaaataatataatatattgagtggcgtccatttataccaccaaattgggtggcatggat 41159349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 409 - 497
Target Start/End: Complemental strand, 35034421 - 35034334
Alignment:
Q  409 tttagagttttggaggaatggtatggatatttaaaaaatgtagttgaatgatttaaataattgaaaagtgtgaagtaatataatgtatt 497  Q
    |||| ||||||||| |||| ||||| |||||||  |||| | ||||  |||||||||||||| ||||   |||||||||||||||||||    
T  35034421 tttaaagttttggaagaattgtatgaatatttaggaaatatggttgggtgatttaaataatt-aaaaacatgaagtaatataatgtatt 35034334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 399 - 455
Target Start/End: Complemental strand, 41159519 - 41159463
Alignment:
Q  399 tgggacctattttagagttttggaggaatggtatggatatttaaaaaatgtagttga 455  Q
    ||||||| |||| ||||||||||| |  ||||||||||||||| ||||||| |||||    
T  41159519 tgggacccatttgagagttttggatgggtggtatggatatttagaaaatgtggttga 41159463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 98; Significance: 6e-48; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 387 - 548
Target Start/End: Original strand, 40278928 - 40279089
Alignment:
Q  387 ttgtaagataagtgggacctattttagagttttggaggaatggtatggatatttaaaaaatgtagttgaatgatttaaataattgaaaagtgtgaagtaa 486  Q
    ||||||||||||||||||| ||||||||||||| | ||| ||||||||||||||| ||||||||||||| || |||||||||||| ||||| | ||||||    
T  40278928 ttgtaagataagtgggacccattttagagttttagtggagtggtatggatatttagaaaatgtagttgagtggtttaaataattggaaagtataaagtaa 40279027  T
Q  487 tataatgtattatgtgggacccatttataccacccatatgggtggcatggatgtggttgctc 548  Q
    |||||| ||||||||||| |||||||||||||| ||| ||||||||||| |||||| |||||    
T  40279028 tataatatattatgtgggtcccatttataccactcatttgggtggcatgaatgtgggtgctc 40279089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 383 - 549
Target Start/End: Original strand, 18226959 - 18227125
Alignment:
Q  383 tatattgtaagataagtgggacctattttagagttttggaggaatggtatggatatttaaaaaatgtagttgaatgatttaaataattgaaaagtgtgaa 482  Q
    |||||||| |||| ||||||| | ||||||||||||   | |  |||||||||||||||||||||||||||| ||| ||||||||||||  ||||||||     
T  18226959 tatattgtgagattagtgggatccattttagagtttataatgggtggtatggatatttaaaaaatgtagttggatggtttaaataattgggaagtgtgag 18227058  T
Q  483 gtaatataatgtattatgtgggacccatttataccacccatatgggtggcatggatgtggttgctct 549  Q
    |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||    
T  18227059 gtaatataatgtattatgtgggacccgtttataccacccaaatgggtggcatggatgtggatgctct 18227125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 381 - 542
Target Start/End: Original strand, 9682318 - 9682478
Alignment:
Q  381 aatatattgtaagataagtgggacctattttagagttttggaggaatggtatggatatttaaaaaatgtagttgaatgatttaaataattgaaaagtgtg 480  Q
    ||||||||||||||| ||||||||| ||| || ||||||| | ||||||||||||| |||| ||||||||||||| || |||||||||||||||||||||    
T  9682318 aatatattgtaagattagtgggacccattata-agttttgtaagaatggtatggatgtttagaaaatgtagttgagtggtttaaataattgaaaagtgtg 9682416  T
Q  481 aagtaatataatgtattatgtgggacccatttataccacccatat-gggtggcatggatgtgg 542  Q
    ||||||||||| ||||||  ||||||||||||||||||||||| | | |||||||||||||||    
T  9682417 aagtaatataaagtatta-ctgggacccatttataccacccatgtagagtggcatggatgtgg 9682478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 381 - 549
Target Start/End: Original strand, 1156230 - 1156398
Alignment:
Q  381 aatatattgtaagataagtgggacctattttagagttttggaggaatggtatggatatttaaaaaatgtagttgaatgatttaaataattgaaaagtgtg 480  Q
    ||||||||||||||| |||| ||||||||||| | ||||||| || ||||||||||||||| || || ||||| | || ||||||||||||  |||||||    
T  1156230 aatatattgtaagatgagtgagacctattttaaaattttggaagagtggtatggatatttagaagatatagtttagtggtttaaataattgggaagtgtg 1156329  T
Q  481 aagtaatataatgtattatgtgggacccatttataccacccatatgggtggcatggatgtggttgctct 549  Q
    || ||||||| ||||||| ||| |||||||||||||||| ||||||||||| |||||||||| ||||||    
T  1156330 aaataatatattgtattacgtgagacccatttataccactcatatgggtggtatggatgtggatgctct 1156398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 385 - 547
Target Start/End: Complemental strand, 11425622 - 11425461
Alignment:
Q  385 tattgtaagataagtgggacctattttagagttttggaggaatggtatggatatttaaaaaatgtagttgaatgatttaaataattgaaaagtgtgaagt 484  Q
    ||||||||||||||  ||||| ||||||||||||| ||||| || |||| ||||||| ||||||||||||| |   |||||||||||  |||||| ||||    
T  11425622 tattgtaagataagcaggacccattttagagttttagaggagtg-tatgaatatttagaaaatgtagttgagtcggttaaataattgggaagtgtaaagt 11425524  T
Q  485 aatataatgtattatgtgggacccatttataccacccatatgggtggcatggatgtggttgct 547  Q
    |||||||| ||||||||||  ||||||||||||| |||| |||||||||||||||||||||||    
T  11425523 aatataatatattatgtggatcccatttataccatccatttgggtggcatggatgtggttgct 11425461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 381 - 549
Target Start/End: Original strand, 17312810 - 17312977
Alignment:
Q  381 aatatattgtaagataagtgggacctattttagagttttggaggaatggtatggatatttaaaaaatgtagttgaatgatttaaataattgaaaagtgtg 480  Q
    ||||||||||||||| ||||||||| ||| || | ||||| | |||||||||||||||||| || |||||||||| || |||||||||||||||||||||    
T  17312810 aatatattgtaagattagtgggacccattataaa-ttttgtaagaatggtatggatatttagaagatgtagttgagtggtttaaataattgaaaagtgtg 17312908  T
Q  481 aagtaatataatgtattatgtgggacccatttataccacccatat-gggtggcatggatgtggttgctct 549  Q
    ||||||||||| ||||||  || ||||||||||||||| |||| | | ||||||||||||||| ||||||    
T  17312909 aagtaatataaagtatta-ctgagacccatttataccatccatgtagagtggcatggatgtgggtgctct 17312977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 383 - 549
Target Start/End: Complemental strand, 35159011 - 35158845
Alignment:
Q  383 tatattgtaagataagtgggacctattttagagttttggaggaatggtatggatatttaaaaaatgtagttgaatgatttaaataattgaaaagtgtgaa 482  Q
    ||||||||| ||| ||||||||||||||||||||||  ||  ||||||||| ||||||| ||||||||||||| || ||||||||||||  ||||||  |    
T  35159011 tatattgtacgattagtgggacctattttagagtttacgaaaaatggtatgaatatttagaaaatgtagttgagtggtttaaataattgggaagtgtcca 35158912  T
Q  483 gtaatataatgtattatgtgggacccatttataccacccatatgggtggcatggatgtggttgctct 549  Q
    |||||||||| ||||| ||  ||| ||||||||||||||||||| |||  |||||||||| ||||||    
T  35158911 gtaatataatatattaagtcagactcatttataccacccatatgagtgatatggatgtggatgctct 35158845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 549 - 623
Target Start/End: Complemental strand, 41488531 - 41488457
Alignment:
Q  549 ttatctcaaattcagcttatcctaatagtattattatgatgctcacaaaataatgattgattgattgcttgatat 623  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41488531 ttatctcaaattcagcttatcctaatagtattattatgatgctcacaaaataatgattgattgattgcttgatat 41488457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 409 - 549
Target Start/End: Original strand, 37479177 - 37479317
Alignment:
Q  409 tttagagttttggaggaatggtatggatatttaaaa-aatgtagttgaatgatttaaataattgaaaagtgtgaagtaatataatgtattatgtgggacc 507  Q
    ||||||||||| || || | |||||||||||||||| ||||||||||| || |||||||||||||||||| | |||||||||||| |||||||| |||      
T  37479177 tttagagttttagatgagtagtatggatatttaaaaaaatgtagttgagtggtttaaataattgaaaagtttaaagtaatataatatattatgt-ggatt 37479275  T
Q  508 catttataccacccatatgggtggcatggatgtggttgctct 549  Q
    ||||||||||| ||||||  ||||||||||||||||||||||    
T  37479276 catttataccatccatataagtggcatggatgtggttgctct 37479317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 11 - 182
Target Start/End: Complemental strand, 41488703 - 41488529
Alignment:
Q  11 cacagatattaccatttaatatgtttcaatttgtacttaatgaatgtatttatctaaacgcaaattttaaagaaattaacctgttc-ccgttgcttccct 109  Q
    ||||||||||| |||||||||||||| |||||  | ||| |||||||||||||||||||| |||||||||||||| |||||||||| | |||||||||||    
T  41488703 cacagatattaacatttaatatgttttaatttagatttattgaatgtatttatctaaacgtaaattttaaagaaagtaacctgttctcggttgcttccct 41488604  T
Q  110 c--nnnnnnnnnnnnnncctatttccagttgctctcaaagaaatagttcaatcattcaagagaaatagctattta 182  Q
    |                ||| |||||||||||||||||| |||||||||||||||| ||||||||||| ||||||    
T  41488603 caaaaaaaaaaaaaaaacctgtttccagttgctctcaaataaatagttcaatcatttaagagaaatagatattta 41488529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 180 - 381
Target Start/End: Original strand, 40278490 - 40278684
Alignment:
Q  180 ttagagcatacatattgcctgtccatatgggtagtatcacactaaccaatgctcttgtgtcataatatcatggataattggctttggaatagagtagtga 279  Q
    |||||||||||| || |||||  ||||||||| ||||||||||  |||||||| ||||||||||| |||||||||||||| | ||| ||| ||||||| |    
T  40278490 ttagagcatacacatcgcctgcacatatgggtggtatcacactggccaatgcttttgtgtcataaaatcatggataattgacattgaaattgagtagtta 40278589  T
Q  280 aactatacatggtagcaatgcattactacgttccttttcatgtaattgtcagattttatagatattttgtaatac-tttgagttttatttcttttaatta 378  Q
    |||||| ||||||||       ||||||| |||||||||  | ||||||| || ||| |  | |||||||| ||| |||||||||| |||||||||||||    
T  40278590 aactatccatggtag-------ttactaccttccttttccagcaattgtctga-tttgtgcacattttgtattacttttgagttttttttcttttaatta 40278681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 414 - 520
Target Start/End: Original strand, 27594257 - 27594363
Alignment:
Q  414 agttttggaggaatggtatggatatttaaaaaatgtagttgaatgatttaaataattgaaaagtgtgaagtaatataatgtattatgtgggacccattta 513  Q
    ||||||| | || ||||||| ||||||| ||||||||||||| || |||||||||||| || ||||||| |||||||| | |||| ||||||||||||||    
T  27594257 agttttgtaagagtggtatgaatatttagaaaatgtagttgagtggtttaaataattggaaggtgtgaaataatataaagaattacgtgggacccattta 27594356  T
Q  514 taccacc 520  Q
    | |||||    
T  27594357 ttccacc 27594363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 399 - 549
Target Start/End: Complemental strand, 45251579 - 45251430
Alignment:
Q  399 tgggacctattttagagttttggaggaatggtatggatatttaaaaaatgtagttgaatgatttaaataattgaaaagtgtgaagtaatataatgtatta 498  Q
    ||||||| ||||||||||||| ||| | | |||||||||||||||||||||| || | || |||||||||| ||||| |||||| ||| ||||| || |     
T  45251579 tgggaccgattttagagttttagag-agtagtatggatatttaaaaaatgtatttaagtggtttaaataatagaaaaatgtgaaataacataatttagtc 45251481  T
Q  499 tgtgggacccatttataccacccatatgggtggcatggatgtggttgctct 549  Q
      ||||||||  ||||||||| ||||||||  |||||||||||| ||||||    
T  45251480 aatgggacccgcttataccactcatatgggcagcatggatgtggatgctct 45251430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 397 - 488
Target Start/End: Original strand, 5191320 - 5191411
Alignment:
Q  397 agtgggacctattttagagttttggaggaatggtatggatatttaaaaaatgtagttgaatgatttaaataattgaaaagtgtgaagtaata 488  Q
    ||||||| | |||||||| ||||||| || || |||| |||||| ||||||||| |||| |  ||||| |||||||||||||||||||||||    
T  5191320 agtgggatccattttagaattttggatgagtgatatgaatatttgaaaaatgtaattgagtagtttaagtaattgaaaagtgtgaagtaata 5191411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 460 - 537
Target Start/End: Complemental strand, 16577471 - 16577394
Alignment:
Q  460 tttaaataattgaaaagtgtgaagtaatataatgtattatgtgggacccatttataccacccatatgggtggcatgga 537  Q
    |||||||||||||||| ||| || |||||||||||||| | || |||||||||||| |   |||||| ||||||||||    
T  16577471 tttaaataattgaaaaatgtaaaataatataatgtattttatgagacccatttataactatcatatgagtggcatgga 16577394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 427 - 492
Target Start/End: Complemental strand, 40713843 - 40713778
Alignment:
Q  427 tggtatggatatttaaaaaatgtagttgaatgatttaaataattgaaaagtgtgaagtaatataat 492  Q
    |||||| |||||||||||||||| ||| | |  ||||||||||| ||||||||||| |||||||||    
T  40713843 tggtatagatatttaaaaaatgtggtttacttgtttaaataatttaaaagtgtgaaataatataat 40713778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 435 - 489
Target Start/End: Complemental strand, 34954380 - 34954327
Alignment:
Q  435 atatttaaaaaatgtagttgaatgatttaaataattgaaaagtgtgaagtaatat 489  Q
    ||||||||||||||||||||| || ||||||||||| |||| | |||||||||||    
T  34954380 atatttaaaaaatgtagttgagtggtttaaataatt-aaaaatatgaagtaatat 34954327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 81; Significance: 8e-38; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 395 - 547
Target Start/End: Original strand, 2844107 - 2844258
Alignment:
Q  395 taagtgggacctattttagagttttggaggaatggtatggatatttaaaaaatgtagttgaatgatttaaataattgaaaagtgtgaagtaatataatgt 494  Q
    ||||||| | ||| ||||||||||| || || | ||||| ||||||||||||||||||||| || ||||||||||||  |||||||||||||||||||||    
T  2844107 taagtggaatctaatttagagttttagatgagtagtatgaatatttaaaaaatgtagttgagtggtttaaataattgggaagtgtgaagtaatataatgt 2844206  T
Q  495 attatgtgggacccatttataccacccatatgggtggcatggatgtggttgct 547  Q
    ||||||||  || |||||||||||||||||| |||||||| ||||||||||||    
T  2844207 attatgtgaaactcatttataccacccatatcggtggcat-gatgtggttgct 2844258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 397 - 549
Target Start/End: Original strand, 10682482 - 10682633
Alignment:
Q  397 agtgggacctattttagagttttggaggaatggtatggatatttaaaaaatgtagttgaatgatttaaataattgaaaagtgtgaagtaatataatgtat 496  Q
    ||||||||| |||||||||||||  | || ||  |||||||||| |||||||||||||| || ||||||||||||| ||||||||||||||||||| |||    
T  10682482 agtgggacccattttagagttttt-atgagtgacatggatatttgaaaaatgtagttgagtggtttaaataattgagaagtgtgaagtaatataatatat 10682580  T
Q  497 tatgtgggacccatttataccacccatatgggtggcatggatgtggttgctct 549  Q
    || |||||  ||||||| |||| |||||||||||| ||| |||||| ||||||    
T  10682581 taagtggggtccatttaaaccatccatatgggtggaatgaatgtggatgctct 10682633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 449 - 526
Target Start/End: Complemental strand, 30775423 - 30775346
Alignment:
Q  449 tagttgaatgatttaaataattgaaaagtgtgaagtaatataatgtattatgtgggacccatttataccacccatatg 526  Q
    ||||||| || |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||    
T  30775423 tagttgagtggtttaaataattgaaaagtgtgaagtaatataatgtattatgtaggacccatttataccacctatatg 30775346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 384 - 551
Target Start/End: Complemental strand, 19789367 - 19789200
Alignment:
Q  384 atattgtaagataagtgggacctattttagagttttggaggaatggtatggatatttaaaaaatgtagttgaatgatttaaataattgaaaagtgtgaag 483  Q
    |||||||||||  ||||||||| ||| || ||||||| | || || |||| ||||||| |||||||| || | ||||||||||||||||||||||||  |    
T  19789367 atattgtaagaatagtgggacccattgta-agttttgtaagagtgatatgaatatttagaaaatgtaattaagtgatttaaataattgaaaagtgtggcg 19789269  T
Q  484 taatataatgtattatgtgggacccatttataccacccatat-gggtggcatggatgtggttgctctta 551  Q
    ||||||||  ||||| |||||||||| ||||||||||||| | | ||| ||| ||||||| ||||||||    
T  19789268 taatataaaatattacgtgggacccagttataccacccatgtagagtgacatagatgtgggtgctctta 19789200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 384 - 523
Target Start/End: Complemental strand, 19763677 - 19763539
Alignment:
Q  384 atattgtaagataagtgggacctattttagagttttggaggaatggtatggatatttaaaaaatgtagttgaatgatttaaataattgaaaagtgtgaag 483  Q
    |||||||||||  ||||| ||| ||| || ||||||| | || ||||||| ||||||| |||||||| || | || |||||||||||| |||||||||||    
T  19763677 atattgtaagaatagtggaacccattgta-agttttgtaagagtggtatgaatatttagaaaatgtaattaagtggtttaaataattggaaagtgtgaag 19763579  T
Q  484 taatataatgtattatgtgggacccatttataccacccat 523  Q
    ||||||||  ||||| |||||||||| |||||||||||||    
T  19763578 taatataaaatattacgtgggacccagttataccacccat 19763539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 438 - 520
Target Start/End: Complemental strand, 13685478 - 13685396
Alignment:
Q  438 tttaaaaaatgtagttgaatgatttaaataattgaaaagtgtgaagtaatataatgtattatgtgggacccatttataccacc 520  Q
    |||| ||||| ||||||| || |||||||||||||||||| | || |||||||||||||||||||||||||||||||||||||    
T  13685478 tttagaaaatatagttgagtgttttaaataattgaaaagtataaaataatataatgtattatgtgggacccatttataccacc 13685396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 383 - 447
Target Start/End: Complemental strand, 30775675 - 30775611
Alignment:
Q  383 tatattgtaagataagtgggacctattttagagttttggaggaatggtatggatatttaaaaaat 447  Q
    |||||||||||||||||| ||| |||||| ||||||||||| | |||||||  |||||| |||||    
T  30775675 tatattgtaagataagtgagacttatttttgagttttggagaagtggtatgagtatttagaaaat 30775611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 394 - 497
Target Start/End: Original strand, 34427048 - 34427151
Alignment:
Q  394 ataagtgggacctattttagagttttggaggaatggtatggatatttaaaaaatgtagttgaatgatttaaataattgaaaagtgtgaagtaatataatg 493  Q
    |||| ||||||| |||||| | |||||||  | ||| ||| |||||||||||| |||||||| |  ||||||||||| | |||||| |||||| |||||     
T  34427048 ataaatgggacccattttaaaattttggattagtggcatgcatatttaaaaaaagtagttgagtagtttaaataattaagaagtgttaagtaacataata 34427147  T
Q  494 tatt 497  Q
    ||||    
T  34427148 tatt 34427151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 407 - 475
Target Start/End: Complemental strand, 6314059 - 6313994
Alignment:
Q  407 attttagagttttggaggaatggtatggatatttaaaaaatgtagttgaatgatttaaataattgaaaa 475  Q
    |||||||||||||| | || || |||| |||||||||||||||||||||    ||||||||||||||||    
T  6314059 attttagagttttgaaagagtgctatgaatatttaaaaaatgtagttga---gtttaaataattgaaaa 6313994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 97
Target Start/End: Original strand, 20408361 - 20408442
Alignment:
Q  16 atattaccatttaatatgtttcaatttgtacttaatgaatgtatttatctaaacgcaaattttaaagaaattaacctgttcc 97  Q
    |||||| |||| || ||||| ||||||| ||||  | |||||||||||||||  ||||||||| | ||||||| ||||||||    
T  20408361 atattagcattcaacatgttccaatttggacttgttcaatgtatttatctaagtgcaaattttgatgaaattagcctgttcc 20408442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 397 - 497
Target Start/End: Complemental strand, 30349301 - 30349201
Alignment:
Q  397 agtgggacctattttagagttttggaggaatggtatggatatttaaaaaatgtagttgaatgatttaaataattgaaaagtgtgaagtaatataatgtat 496  Q
    ||||||||| ||| | |||||||||| || ||| | || ||||| |||| | || ||||||  |||||||| |||| |||| |||||||||||||| |||    
T  30349301 agtgggacccattgtggagttttggatgagtggaacgggtatttcaaaattataattgaattgtttaaatatttgagaagtatgaagtaatataatatat 30349202  T
Q  497 t 497  Q
    |    
T  30349201 t 30349201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 65; Significance: 3e-28; HSPs: 2)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 398 - 549
Target Start/End: Complemental strand, 13925 - 13773
Alignment:
Q  398 gtgggacctattttagagttttggaggaatggtatggatatttaaaaaa-tgtagttgaatgatttaaataattgaaaagtgtgaagtaatataatgtat 496  Q
    |||||||| | |||| |||||| || || | |||||||||||||||||| ||||   || || ||||||||||||  |||||| || ||||||| | |||    
T  13925 gtgggacccactttaaagttttagatgagtagtatggatatttaaaaaaatgtaagagagtggtttaaataattgggaagtgtaaaataatatattatat 13826  T
Q  497 tatgtgggacccatttataccacccatatgggtggcatggatgtggttgctct 549  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  13825 tatgtgggacccatttataccacccaaatgggtggcatggatgtggatgctct 13773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 398 - 549
Target Start/End: Complemental strand, 21662 - 21510
Alignment:
Q  398 gtgggacctattttagagttttggaggaatggtatggatatttaaaaaa-tgtagttgaatgatttaaataattgaaaagtgtgaagtaatataatgtat 496  Q
    |||||||| | |||| |||||| || || | |||||||||||||||||| ||||   || || ||||||||||||  |||||| || ||||||| | |||    
T  21662 gtgggacccactttaaagttttagatgagtagtatggatatttaaaaaaatgtaagagagtggtttaaataattgggaagtgtaaaataatatattatat 21563  T
Q  497 tatgtgggacccatttataccacccatatgggtggcatggatgtggttgctct 549  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  21562 tatgtgggacccatttataccacccaaatgggtggcatggatgtggatgctct 21510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0867 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0867
Description:

Target: scaffold0867; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 468 - 549
Target Start/End: Original strand, 3546 - 3627
Alignment:
Q  468 attgaaaagtgtgaagtaatataatgtattatgtgggacccatttataccacccatatgggtggcatggatgtggttgctct 549  Q
    ||||| ||||||||||||||||||| ||||| |||||  | ||||| ||||||||||||||||| ||| |||||| ||||||    
T  3546 attgagaagtgtgaagtaatataatatattaagtggggtctatttaaaccacccatatgggtggaatgaatgtggatgctct 3627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University