View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21321_low_20 (Length: 286)
Name: NF21321_low_20
Description: NF21321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21321_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 5391098 - 5391382
Alignment:
| Q |
1 |
gcatctgaagctgttgaataacattcccatgcagcttttgagccaggaaaccttaatggaagaccctcatgcttgcaaattgcagcgtaaacacaaagcg |
100 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5391098 |
gcatctgaagctgttgaataacattcccatgcaccttttgagccaggaaaccttaatggaagaccctcatgcttgcaaattgcagcgtaaacacaaagcg |
5391197 |
T |
|
| Q |
101 |
tgccaatgaggttcatcatgctgtaaggtgaaaatccaaagataacttgtggtcgattaatgaaccatgtcattccttttttcttacccacctgaataaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5391198 |
tgccaatgaggttcatcatgctgtaaggtgaaaatccaaagataacttgtggtcgattaatgaaccatgtcattccttttttcttacccacctgaataaa |
5391297 |
T |
|
| Q |
201 |
aatatagttcatctaattatataa---tagtgtatgttgtgacgtattttattgacaataatttgtttgtttagtataatctacc |
282 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
5391298 |
aatatagttcatctaattatataatagtagtgtatgttgtgacgtattttattgacaataatttgtttgtttagtttaatttacc |
5391382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 5399817 - 5400017
Alignment:
| Q |
1 |
gcatctgaagctgttgaataacattcccatgcagcttttgagccaggaaaccttaatggaagaccctcatgcttgcaaattgcagcgtaaacacaaagcg |
100 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5399817 |
gcatctgaagctgttgaataacattcccatgcaccttttgagccaggaaaccttaatggaagaccctcatgcttgcaaattgcagcgtaaacacaaagcg |
5399916 |
T |
|
| Q |
101 |
tgccaatgaggttcatcatgctgtaaggtgaaaatccaaagataacttgtggtcgattaatgaaccatgtcattccttttttcttacccacctgaataaa |
200 |
Q |
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| T |
5399917 |
tgccaatgaggttcatcatgctgtaaggtgaaaatccaaagataacttgtggtcgattaatgaaccatgtcgttccttttttcttacccacctgaataaa |
5400016 |
T |
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| Q |
201 |
a |
201 |
Q |
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| T |
5400017 |
a |
5400017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 5394636 - 5394869
Alignment:
| Q |
1 |
gcatctgaagctgttgaataacattcccatgcagcttttgagccaggaaaccttaatggaagaccctcatgcttgcaaattgcagcgtaaacacaaagcg |
100 |
Q |
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||||||||||| || |||||||| ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |
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| T |
5394636 |
gcatctgaagcagtagaataacactcccatgcaccttttgagccaggaaaccttaaaggaagaccctcatgcttgcaaattgcggcgtaaacacaaagcg |
5394735 |
T |
|
| Q |
101 |
tgccaatgaggttcatcatgctgtaaggtgaaaatccaaagataacttgtggtcgattaatgaaccatgtcattccttttttcttacccacctgaataaa |
200 |
Q |
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| T |
5394736 |
tgccaatgacgttcatcatgctataaggtgaaaatccaaagatggggtgtggtcgattaatgaaccatgtcgttccttttttcttacccacctgaacaaa |
5394835 |
T |
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| Q |
201 |
aatatagttcatctaattatataatagtgtatgt |
234 |
Q |
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|||| |||||| ||||||||||||| ||||||| |
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| T |
5394836 |
tatattgttcatttaattatataataatgtatgt |
5394869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 5e-22; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 58 - 143
Target Start/End: Original strand, 3819018 - 3819103
Alignment:
| Q |
58 |
ggaagaccctcatgcttgcaaattgcagcgtaaacacaaagcgtgccaatgaggttcatcatgctgtaaggtgaaaatccaaagat |
143 |
Q |
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|||| |||||||||||| |||||||||||||||||||||| || ||||||| |||||||| ||||||||||||||||||||||| |
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| T |
3819018 |
ggaacaccctcatgcttacaaattgcagcgtaaacacaaatagttccaatgatattcatcatactgtaaggtgaaaatccaaagat |
3819103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 58 - 143
Target Start/End: Complemental strand, 47338859 - 47338774
Alignment:
| Q |
58 |
ggaagaccctcatgcttgcaaattgcagcgtaaacacaaagcgtgccaatgaggttcatcatgctgtaaggtgaaaatccaaagat |
143 |
Q |
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| T |
47338859 |
ggaacaccctcatgcttacaaattgcagcgtaaacacaaatagttccaatgatattcatcatactgtaaggtgaaaatccaaagat |
47338774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 70 - 154
Target Start/End: Complemental strand, 47347317 - 47347233
Alignment:
| Q |
70 |
tgcttgcaaattgcagcgtaaacacaaagcgtgccaatgaggttcatcatgctgtaaggtgaaaatccaaagataacttgtggtc |
154 |
Q |
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| T |
47347317 |
tgcttgcaaattgcagcataaacacaaagtgtaccaacgagattcatcaaactataaggtgaaaatccaaatataacttgaggtc |
47347233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 67 - 143
Target Start/End: Complemental strand, 47349859 - 47349783
Alignment:
| Q |
67 |
tcatgcttgcaaattgcagcgtaaacacaaagcgtgccaatgaggttcatcatgctgtaaggtgaaaatccaaagat |
143 |
Q |
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||||||||||||||||||||||||| ||||||||||||| | ||||||| ||||||||||| ||||||||||| |
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| T |
47349859 |
tcatgcttgcaaattgcagcgtaaaggcaaagcgtgccaacaacattcatcaaactgtaaggtgagaatccaaagat |
47349783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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