View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21321_low_21 (Length: 278)
Name: NF21321_low_21
Description: NF21321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21321_low_21 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 44108341 - 44108072
Alignment:
| Q |
1 |
agaaaaattgaatgatttgaaggatgaataaccaaaagaactgatcgagaacaacaatagatgaataagcaaaatgaaagaaattgaa-gcaaaaga--- |
96 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||| |||||| ||||||||||| |||||||| |
|
|
| T |
44108341 |
agaaaaattgaatgatttgaaggatgaataagcaaaagaactgatcgagaagaacaacagatgaataaccaaaattcaagaaattgaacgcaaaagaaat |
44108242 |
T |
|
| Q |
97 |
-----------tgaatgtgtttgggggaaattagattttcaaatgacaatattatattaacaattgtataataaccgattgagattcgagaacaacaaca |
185 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
44108241 |
taaagcatagatgaatgtgtttgggggaaattagattttgaaatgacaatattatattaacaattgtataataaccaattgagattcgagaacaacaaca |
44108142 |
T |
|
| Q |
186 |
caatcgaagcacaaaaattagaa-aaatattaagaacaaaaattgaatcatttgaaaactgcagaagaac |
254 |
Q |
| |
|
|||||| |||||| ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44108141 |
caatcgtagcacagaaattagaataaaaattaagaacaaaaattgaatcatttgaaaactgcagaagaac |
44108072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University