View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21321_low_22 (Length: 266)
Name: NF21321_low_22
Description: NF21321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21321_low_22 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-138; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 11 - 266
Target Start/End: Original strand, 42843018 - 42843273
Alignment:
| Q |
11 |
cacagatgatttatcgtgggagatagacaatagaagttatgataatttgctcaaaaagttcatggaaaaggaggaagagctaagggttaccaatttaaag |
110 |
Q |
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| T |
42843018 |
cacagatgatttatcgtgggagatagacaatagaagttatgataatttgctcaaaaagttcatggaaaaggaggaagagctaagggttaccaatttaaag |
42843117 |
T |
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| Q |
111 |
cttcagctttcggaagaagagaatataaagttgaaggttcaagttgagagtagtgagggtctgtttgatgatttatgtgaggaattgaggctgaaagaga |
210 |
Q |
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| T |
42843118 |
cttcagctttcggaagaagagaatataaagttgaaggttcaagttgagagtagtgagggtctgtttgatgatttatgtgaggaattgaagctgaaagaga |
42843217 |
T |
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| Q |
211 |
aggagttgcataaacaaaaagagctttcggaagaggagattttcaagttgaagatt |
266 |
Q |
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| T |
42843218 |
aggagttgcataaacaaaaagtgctttcggaagaggagattttcaagttgaagatt |
42843273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 20 - 264
Target Start/End: Original strand, 42819106 - 42819350
Alignment:
| Q |
20 |
tttatcgtgggagatagacaatagaagttatgataatttgctcaaaaagttcatggaaaaggaggaagagctaagggttaccaatttaaagcttcagctt |
119 |
Q |
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| T |
42819106 |
tttattgtgggagattgacaatagaagttatgataagttgctcaaaaagtgcattgagaacgaggaagagctaagagttaccaatttaaagcttcaactt |
42819205 |
T |
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| Q |
120 |
tcggaagaagagaatataaagttgaaggttcaagttgagagtagtgagggtctgtttgatgatttatgtgaggaattgaggctgaaagagaaggagttgc |
219 |
Q |
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| T |
42819206 |
tcggaaaaagaggttatcaacttgaaggttcaagttgagaacagcaagggtcagtttgataatgtgtgtgaagaattgaagctgaaagaggacgagatgc |
42819305 |
T |
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| Q |
220 |
ataaacaaaaagagctttcggaagaggagattttcaagttgaaga |
264 |
Q |
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| T |
42819306 |
ataaacaaaaggaggtttcagaaaaagagattttcaagtagaaga |
42819350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 36 - 171
Target Start/End: Original strand, 42834318 - 42834453
Alignment:
| Q |
36 |
gacaatagaagttatgataatttgctcaaaaagttcatggaaaaggaggaagagctaagggttaccaatttaaagcttcagctttcggaagaagagaata |
135 |
Q |
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| T |
42834318 |
gacaatagaagttatgatgatttgatcaaaaaaattattggaacggaggaagagctaagggttaccaattcaaagcttcgactttcagaagaagagaata |
42834417 |
T |
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| Q |
136 |
taaagttgaaggttcaagttgagagtagtgagggtc |
171 |
Q |
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| T |
42834418 |
taaagttgaaggtccaagttgggaatggtgagggtc |
42834453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 192 - 266
Target Start/End: Original strand, 42843316 - 42843390
Alignment:
| Q |
192 |
gaattgaggctgaaagagaaggagttgcataaacaaaaagagctttcggaagaggagattttcaagttgaagatt |
266 |
Q |
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| T |
42843316 |
gaattgaacctgaaagagaaggagttgaataaacaaaaggagcttttaaaagaagagattttcaatttgaagatt |
42843390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 82; Significance: 8e-39; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 19 - 244
Target Start/End: Original strand, 12621799 - 12622024
Alignment:
| Q |
19 |
atttatcgtgggagatagacaatagaagttatgataatttgctcaaaaagttcatggaaaaggaggaagagctaagggttaccaatttaaagcttcagct |
118 |
Q |
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| T |
12621799 |
atttatcatgggagatggacaataaaagttatgatcaattgctcaaaaagttcaaagaaaatgaggaagagctaagagtttctaattttaaacttcagct |
12621898 |
T |
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| Q |
119 |
ttcggaagaagagaatataaagttgaaggttcaagttgagagtagtgagggtctgtttgatgatttatgtgaggaattgaggctgaaagagaaggagttg |
218 |
Q |
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||||||| |||||| |||||||||||| ||||||| ||||| ||| |||||| | ||||| | | |||| ||||||| |||||| || | ||| || |
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| T |
12621899 |
ttcggaacaagagattataaagttgaaagttcaagctgagaatagcaagggtcagcttgataaggtgcgtgaagaattgaagctgaacaaggaagagctg |
12621998 |
T |
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| Q |
219 |
cataaacaaaaagagctttcggaaga |
244 |
Q |
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| T |
12621999 |
catgaacaaaaagagctttcgaaaga |
12622024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 24 - 266
Target Start/End: Original strand, 12627682 - 12627924
Alignment:
| Q |
24 |
tcgtgggagatagacaatagaagttatgataatttgctcaaaaagttcatggaaaaggaggaagagctaagggttaccaatttaaagcttcagctttcgg |
123 |
Q |
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||||||||||| ||||| ||| ||||||| | ||||| |||||||| | |||||||||||||||||||| || ||||||| || ||||| ||||| |
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| T |
12627682 |
tcgtgggagatggacaacggaacttatgatgagttgcttaaaaagtttaatgaaaaggaggaagagctaagaatttccaattttaaacttcaactttcaa |
12627781 |
T |
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| Q |
124 |
aagaagagaatataaagttgaaggttcaagttgagagtagtgagggtctgtttgatgatttatgtgaggaattgaggctgaaagagaaggagttgcataa |
223 |
Q |
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|| |||| | |||||||||||||||| || |||||| |||||||||| | ||||| || | | || ||| ||| |||||||||| | ||| ||| ||| |
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| T |
12627782 |
aacaagaaactataaagttgaaggttgaaattgagaatagtgagggtgagcttgataatgtgcgcgaagaactgaagctgaaagaggaagaggtgcgtaa |
12627881 |
T |
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| Q |
224 |
acaaaaagagctttcggaagaggagattttcaagttgaagatt |
266 |
Q |
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| T |
12627882 |
actaaaagagcgttcagaacaagagattttcaaattgaagatt |
12627924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 39 - 171
Target Start/End: Complemental strand, 30924849 - 30924717
Alignment:
| Q |
39 |
aatagaagttatgataatttgctcaaaaagttcatggaaaaggaggaagagctaagggttaccaatttaaagcttcagctttcggaagaagagaatataa |
138 |
Q |
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|||| |||||||||| | ||||| || |||||||| |||| |||||||||||| | ||| ||||||| || ||| ||||||| |||||||||| ||| | |
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| T |
30924849 |
aataaaagttatgatgaattgctgaagaagttcattaaaaacgaggaagagctacgagtttccaatttgaaacttaagctttcagaagaagagattatca |
30924750 |
T |
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| Q |
139 |
agttgaaggttcaagttgagagtagtgagggtc |
171 |
Q |
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| T |
30924749 |
agttgaagaatcaaaatgagaaaagtgagggtc |
30924717 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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