View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21321_low_27 (Length: 246)
Name: NF21321_low_27
Description: NF21321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21321_low_27 |
 | |
|
| [»] scaffold0006 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0006 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 130821 - 130593
Alignment:
| Q |
1 |
ctgcctcgttagaatttcgaaaccatcaccaccgctctttcgatcaatttctcgcaaccacttaataagtgccaagtttaattaaaatccaatataaggc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
130821 |
ctgcctcgttagaatttcgaaaccatcaccaccgctctttcgatcaatttctcgcaaccacttaataagtgccaagtttaattaaaatccaatataaggc |
130722 |
T |
|
| Q |
101 |
agttattaacttgttttgcaagaaatcttatgaaatccccataattccttgttgaaatcctatgtatgatatgagataaatattgacaatgaataattat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||||| || |
|
|
| T |
130721 |
agttattaacttgttttgcaagaaatcttatgaaatccccatcattccttgttgaaatcctaagtatgatatgagataaatattgaaaatgaataatgat |
130622 |
T |
|
| Q |
201 |
tttattattgaatgttgacaagtacaaac |
229 |
Q |
| |
|
|||||||||| |||| ||||||||||||| |
|
|
| T |
130621 |
tttattattgcatgtcgacaagtacaaac |
130593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 12 - 117
Target Start/End: Complemental strand, 82098 - 81993
Alignment:
| Q |
12 |
gaatttcgaaaccatcaccaccgctctttcgatcaatttctcgcaaccacttaataagtgccaagtttaattaaaatccaatataaggcagttattaact |
111 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||||||||||||||||||| | ||||||||||| ||| |||||||| ||||||||||| ||||||||| |
|
|
| T |
82098 |
gaatttcgtaaccatcaccaacgctctttcgatcaatttctcgcaaccacctgataagtgccaaattttcttaaaatctaatataaggcacttattaact |
81999 |
T |
|
| Q |
112 |
tgtttt |
117 |
Q |
| |
|
|||||| |
|
|
| T |
81998 |
tgtttt |
81993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 13602164 - 13601936
Alignment:
| Q |
1 |
ctgcctcgttagaatttcgaaaccatcaccaccgctctttcgatcaatttctcgcaaccacttaataagtgccaagtttaattaaaatccaatataaggc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13602164 |
ctgcctcgttagaatttcgaaaccatcaccaccgctctttcgatcaatttctcgcaaccacttaataagtgccaagtttaattaaaatccaatataaggc |
13602065 |
T |
|
| Q |
101 |
agttattaacttgttttgcaagaaatcttatgaaatccccataattccttgttgaaatcctatgtatgatatgagataaatattgacaatgaataattat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||||| || |
|
|
| T |
13602064 |
agttattaacttgttttgcaagaaatcttatgaaatccccatcattccttgttgaaatcctaagtatgatatgagataaatattgaaaatgaataatgat |
13601965 |
T |
|
| Q |
201 |
tttattattgaatgttgacaagtacaaac |
229 |
Q |
| |
|
|||||||||| |||| ||||||||||||| |
|
|
| T |
13601964 |
tttattattgcatgtcgacaagtacaaac |
13601936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 29 - 196
Target Start/End: Original strand, 19153164 - 19153326
Alignment:
| Q |
29 |
ccaccgctctttcgatcaatttctcgcaaccacttaataagtgccaagtttaattaaaatccaatataaggcagttattaacttgttttgcaagaaatct |
128 |
Q |
| |
|
||||||||||||| |||||||||| |||||||| | ||||| |||||||||| |||||||||||||||| | |||||||||| ||||| ||||||| | |
|
|
| T |
19153164 |
ccaccgctctttcaatcaatttctggcaaccacctgataagcgccaagtttacttaaaatccaatataaaacgcttattaacttcttttgaaagaaatat |
19153263 |
T |
|
| Q |
129 |
tatgaaatccccataattccttgttgaaatcctatgtatgatatgagataaatattgacaatgaataa |
196 |
Q |
| |
|
| ||||||||||| |||||||||||||||||||||| || ||||||||||||| |||||||||| |
|
|
| T |
19153264 |
tgtgaaatccccacaattccttgttgaaatcctatg-----taggagataaatattggcaatgaataa |
19153326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University