View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21321_low_29 (Length: 240)
Name: NF21321_low_29
Description: NF21321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21321_low_29 |
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| [»] scaffold0882 (1 HSPs) |
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| [»] scaffold0766 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 26853962 - 26853860
Alignment:
| Q |
1 |
tttgattttgcatgttacatgtatggatcacatcataaatcaaagacaagcgatgaatgcttctgttaggcgagaaaggatggacaggaatgaagcggac |
100 |
Q |
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||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| | |
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| T |
26853962 |
tttgattttgcatgttacaagtatggatcacatcaaaaatcaaagacaagcgatgcatgcttctgttaggcgagaaaggatggagaggaatgaagcggcc |
26853863 |
T |
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| Q |
101 |
gag |
103 |
Q |
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||| |
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| T |
26853862 |
gag |
26853860 |
T |
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Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 43395021 - 43395119
Alignment:
| Q |
1 |
tttgattttgcatgttacatgtatggatcacatcataaatcaaagacaagcgatgaatgcttctgttaggcgagaaaggatggacaggaatgaagcgga |
99 |
Q |
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||||||||||||||||| | ||||||||||| | | |||||||||||||||||| ||||||||||||||||||| |||| || |||||||||||||| |
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| T |
43395021 |
tttgattttgcatgttataggtatggatcacttaaaaaatcaaagacaagcgatacatgcttctgttaggcgagagcggatagagaggaatgaagcgga |
43395119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 76
Target Start/End: Complemental strand, 27704424 - 27704363
Alignment:
| Q |
15 |
ttacatgtatggatcacatcataaatcaaagacaagcgatgaatgcttctgttaggcgagaa |
76 |
Q |
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| T |
27704424 |
ttacatgtaaggaccacatcaaaaatcaaagacaaacaatgcatgcttctgttaggagagaa |
27704363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 7 - 122
Target Start/End: Original strand, 21620438 - 21620553
Alignment:
| Q |
7 |
tttgcatgttacatgtatggatcacatcataaatcaaagacaagcgatgaatgcttctgttaggcgagaaaggatggacaggaatgaagcggacgagata |
106 |
Q |
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||||||||||||||||||||||||||||| ||| || |||||||||||||||||||||||||||||| | ||||| ||||||||||| || | |||| |
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| T |
21620438 |
tttgcatgttacatgtatggatcacatcaaaaaccagagacaagcgatgaatgcttctgttaggcgatagctaatggagaggaatgaagcagaggggata |
21620537 |
T |
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| Q |
107 |
atgggcaggcatggtg |
122 |
Q |
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||||| ||| ||||| |
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| T |
21620538 |
gtgggccggcgtggtg |
21620553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 32 - 97
Target Start/End: Original strand, 8681747 - 8681812
Alignment:
| Q |
32 |
atcataaatcaaagacaagcgatgaatgcttctgttaggcgagaaaggatggacaggaatgaagcg |
97 |
Q |
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|||| |||||||||||||| |||| |||||||| |||||||||| ||||||| |||||||||||| |
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| T |
8681747 |
atcagaaatcaaagacaagtgatgcatgcttctattaggcgagagcggatggagaggaatgaagcg |
8681812 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 12 - 95
Target Start/End: Complemental strand, 18518790 - 18518707
Alignment:
| Q |
12 |
atgttacatgtatggatcacatcataaatcaaagacaagcgatgaatgcttctgttaggcgagaaaggatggacaggaatgaag |
95 |
Q |
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|||||||| ||||| |||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||| |||||||||| |
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| T |
18518790 |
atgttacaagtatgaatcacatcataaatcaaagacaagtgatgcatgcttctgttaggcgagaggggatggagaggaatgaag |
18518707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 176 - 221
Target Start/End: Complemental strand, 10125350 - 10125305
Alignment:
| Q |
176 |
aaagcaacattacagacttgatgcaccttcacaacaatgatcatcc |
221 |
Q |
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| T |
10125350 |
aaagcaacattacagacttgatgcaccttcacaacaatgatcatcc |
10125305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 6 - 97
Target Start/End: Complemental strand, 41328130 - 41328040
Alignment:
| Q |
6 |
ttttgcatgttacatgtatggatcacatcataaatcaaagacaagcgatgaatgcttctgttaggcgagaaaggatggacaggaatgaagcg |
97 |
Q |
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|||||||||| ||| ||||||||||||||| |||||||| ||||| |||| |||||||| ||||||| || ||||||||| |||||||||| |
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| T |
41328130 |
ttttgcatgtcacaggtatggatcacatcagaaatcaaatacaagagatgcatgcttct-ttaggcgtgagtggatggacatgaatgaagcg |
41328040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 211
Target Start/End: Complemental strand, 10116736 - 10116701
Alignment:
| Q |
176 |
aaagcaacattacagacttgatgcaccttcacaaca |
211 |
Q |
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| T |
10116736 |
aaagcaacattacagacttgatgcaccttcacaaca |
10116701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0882 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0882
Description:
Target: scaffold0882; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 71
Target Start/End: Complemental strand, 2585 - 2517
Alignment:
| Q |
3 |
tgattttgcatgttacatgtatggatcacatcataaatcaaagacaagcgatgaatgcttctgttaggc |
71 |
Q |
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||||||||||| || ||| |||||||||||| | |||| |||||||| ||| ||||||||||||||| |
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| T |
2585 |
tgattttgcatatttcatatatggatcacataagaaattaaagacaattcatgcatgcttctgttaggc |
2517 |
T |
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Target: scaffold0766 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0766
Description:
Target: scaffold0766; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 71
Target Start/End: Original strand, 818 - 886
Alignment:
| Q |
3 |
tgattttgcatgttacatgtatggatcacatcataaatcaaagacaagcgatgaatgcttctgttaggc |
71 |
Q |
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||||||||||| || ||| |||||||||||| | |||| |||||||| ||| ||||||||||||||| |
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| T |
818 |
tgattttgcatatttcatatatggatcacataagaaattaaagacaattcatgcatgcttctgttaggc |
886 |
T |
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