View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21321_low_39 (Length: 214)
Name: NF21321_low_39
Description: NF21321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21321_low_39 |
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| [»] scaffold0016 (2 HSPs) |
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Alignment Details
Target: scaffold0016 (Bit Score: 182; Significance: 1e-98; HSPs: 2)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 48741 - 48545
Alignment:
| Q |
1 |
tattaatatgttctgattacttcataaaatgatattaatatgttttcaaataagtgattcccaagcatcaacaaatttttagcaaactaattaacatcaa |
100 |
Q |
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| T |
48741 |
tattaatatgttctaattacttcataaaatgatattaatatgttttcaaataagtgattcccaagcatcaacaaatttttcgcaaactaattaacatcaa |
48642 |
T |
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| Q |
101 |
aactttgtatgtgtgaaagctatttaagttcaataaatcatggatgttaaatagtaacatgtatattaacataatttcttgttgttgagaaacatgac |
198 |
Q |
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| T |
48641 |
aactttgtatgtgtgaaagctatttaagttcaataaatcatggatgttaaatagt-acatgtatattaacataatttcttgttgttgagaaacatgac |
48545 |
T |
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Target: scaffold0016; HSP #2
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 79349 - 79168
Alignment:
| Q |
1 |
tattaatatgttctgattacttcataaaatgatattaatatgttttcaaataagtgattcccaagcatcaacaaatttttagcaaactaattaacatcaa |
100 |
Q |
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||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
79349 |
tattaatatgttctgattaattcataacatgatattaatatgttttcaaatacctgattcccaagcatcaacaaatttttagcaaactaattaactacaa |
79250 |
T |
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| Q |
101 |
aactttgtatgtgtgaaagctatttaagttcaataaatcatggatgttaaatagtaacatgtatattaacataatttcttgt |
182 |
Q |
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| T |
79249 |
agctttctatgtctgaaagctatttaagttcaggaaatcatggatgttaaatactagcatatatactaacataatttcttgt |
79168 |
T |
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