View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21321_low_7 (Length: 464)
Name: NF21321_low_7
Description: NF21321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21321_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 322; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 82 - 460
Target Start/End: Complemental strand, 3048848 - 3048474
Alignment:
| Q |
82 |
gctttctatgtttgattttaatcactctactttctccacatagctgtctgtcatctactcctcatattataaaacgatggaagtagaaactttcattgtg |
181 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3048848 |
gctttctatgtttgattttaatcactctactttctccacatagctgtc----atctactcctcatattataaaacgatggaagtagaaactttcattgtg |
3048753 |
T |
|
| Q |
182 |
tgtgatatgcttctccccaatgtgccacgatccacaacaagcaatgttacggatgttacgaaaacataaataaaattctctatactatataagcaatgct |
281 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3048752 |
tgtgatatgcttctccccaatgtgccacgatccacaacaaggaatgttacggatgttacgaaaacataaataaaattctctatactatataagcaatgct |
3048653 |
T |
|
| Q |
282 |
atggatcttatgaaaacataaatataattatatactataattcaatctggtcaatttattcgcaaataaaaggaaaaacacaaggaatgaggtccaaaca |
381 |
Q |
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|||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3048652 |
atggatcttatgaaaacataaataaaattatacactataattcaatctggtcaatttattcgcaaataaaaggaaaaacacaaggaatgaggtccaaaca |
3048553 |
T |
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| Q |
382 |
taaagtgtataataannnnnnnnacaagacataaagtgtagaataataaacatgctactcagcaagagaataatctacc |
460 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
3048552 |
taaagtgtataataattttttttacaagacataaagtgtagaataataaacatgctactcaacaagagaataatctacc |
3048474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 168 - 227
Target Start/End: Complemental strand, 34609420 - 34609361
Alignment:
| Q |
168 |
aaactttcattgtgtgtgatatgcttctccccaatgtgccacgatccacaacaagcaatg |
227 |
Q |
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| T |
34609420 |
aaactttcatggtgcatgatacgcttctccccaatgtgccacaatccacaacaagcaatg |
34609361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 3048934 - 3048867
Alignment:
| Q |
1 |
gaactgatagtgaaataagcgagatggttatttata-------cttttccgttcacaccattcattct |
61 |
Q |
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|||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |
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| T |
3048934 |
gaactgatagtgaaataagccagatggttatttatacgaatctcttttccgttcacaccattcattct |
3048867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 168 - 227
Target Start/End: Original strand, 33465429 - 33465488
Alignment:
| Q |
168 |
aaactttcattgtgtgtgatatgcttctccccaatgtgccacgatccacaacaagcaatg |
227 |
Q |
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|||||||||||||| ||||||||||||| | ||||||||| ||||||||||||||||| |
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| T |
33465429 |
aaactttcattgtgcatgatatgcttctcttctatgtgccacaatccacaacaagcaatg |
33465488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 168 - 227
Target Start/End: Complemental strand, 34606326 - 34606267
Alignment:
| Q |
168 |
aaactttcattgtgtgtgatatgcttctccccaatgtgccacgatccacaacaagcaatg |
227 |
Q |
| |
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|||||||||| ||| |||||||||||||| ||||||||||| |||||| ||||| |||| |
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|
| T |
34606326 |
aaactttcatggtgcatgatatgcttctcctcaatgtgccacaatccacgacaagaaatg |
34606267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 414 - 460
Target Start/End: Original strand, 33465633 - 33465679
Alignment:
| Q |
414 |
aaagtgtagaataataaacatgctactcagcaagagaataatctacc |
460 |
Q |
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||||||||||||||||| ||||||||||| ||||| |||||||||| |
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| T |
33465633 |
aaagtgtagaataataagcatgctactcaaaaagagtataatctacc |
33465679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 188 - 233
Target Start/End: Original strand, 30858486 - 30858531
Alignment:
| Q |
188 |
atgcttctccccaatgtgccacgatccacaacaagcaatgttacgg |
233 |
Q |
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||||||||| ||||||||| ||||||||||| |||||||||||||| |
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| T |
30858486 |
atgcttctctccaatgtgcaacgatccacaataagcaatgttacgg |
30858531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 322 - 381
Target Start/End: Original strand, 38866317 - 38866376
Alignment:
| Q |
322 |
ttcaatctggtcaatttattcgcaaataaaaggaaaaacacaaggaatgaggtccaaaca |
381 |
Q |
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|||||||| |||| |||||||||||| ||||||||| |||||| ||| ||||||||||| |
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| T |
38866317 |
ttcaatcttgtcagtttattcgcaaacaaaaggaaagacacaaagaacaaggtccaaaca |
38866376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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