View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21321_low_9 (Length: 443)

Name: NF21321_low_9
Description: NF21321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21321_low_9
NF21321_low_9
[»] chr3 (7 HSPs)
chr3 (16-249)||(42250236-42250469)
chr3 (342-421)||(42250064-42250143)
chr3 (178-239)||(20932081-20932142)
chr3 (178-225)||(32975236-32975283)
chr3 (151-191)||(3082884-3082924)
chr3 (151-191)||(45683088-45683128)
chr3 (83-131)||(53717460-53717508)
[»] chr6 (1 HSPs)
chr6 (151-239)||(31437382-31437470)
[»] chr4 (6 HSPs)
chr4 (167-234)||(37330187-37330253)
chr4 (83-131)||(11025694-11025742)
chr4 (151-202)||(17999612-17999663)
chr4 (174-239)||(23084788-23084853)
chr4 (151-220)||(29336465-29336533)
chr4 (83-131)||(33604498-33604546)
[»] chr5 (3 HSPs)
chr5 (165-244)||(30277761-30277844)
chr5 (152-202)||(35647468-35647518)
chr5 (151-220)||(30252757-30252825)
[»] chr1 (2 HSPs)
chr1 (151-220)||(14500776-14500844)
chr1 (154-236)||(49380530-49380612)
[»] chr2 (4 HSPs)
chr2 (151-239)||(26405721-26405808)
chr2 (151-191)||(25188018-25188058)
chr2 (151-202)||(20639139-20639190)
chr2 (151-239)||(42490877-42490964)
[»] chr7 (2 HSPs)
chr7 (151-239)||(12614775-12614862)
chr7 (151-239)||(48573799-48573886)
[»] scaffold1430 (1 HSPs)
scaffold1430 (178-225)||(177-224)
[»] chr8 (2 HSPs)
chr8 (151-241)||(18918722-18918811)
chr8 (83-131)||(18918640-18918688)


Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 16 - 249
Target Start/End: Complemental strand, 42250469 - 42250236
Alignment:
Q  16 atcattcacaatcgagctccgtgtttaagtgcttgaacaagccccgtatgtatacatgattcatttttaattaatacttaataaacatataatatctcca 115  Q
    ||||||||||||||| ||||||||||||||| || |||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  42250469 atcattcacaatcgaactccgtgtttaagtgtttaaacaagccccgtatgtacgcatgattcatttttaattaatacttaataaacatataatatctcca 42250370  T
Q  116 acccaacacttcaaaaacattatttaatatgttccatcattaaatttaatcaataatttatctattcattcataatcatctaatttttgaaatactaaat 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42250369 acccaacacttcaaaaacattatttaatatgttccatcattaaatttaatcaataatttatctattcattcataatcatctaatttttgaaatactaaat 42250270  T
Q  216 taattcaattttaatttataaaaatatgtgtact 249  Q
    ||||||||||||||||||||||||||||||||||    
T  42250269 taattcaattttaatttataaaaatatgtgtact 42250236  T

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Target: chr3; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 342 - 421
Target Start/End: Complemental strand, 42250143 - 42250064
Alignment:
Q  342 caactcccatctgatcaaggttatagtaaagagnnnnnnnntctttgacggaaaataaaaattcaacattgatcaaataa 421  Q
    |||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||    
T  42250143 caactcccatctgatcaaggttatagtaaagaggaaaaaaatctttgacggaaaataaaaattcaacattgatcaaataa 42250064  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 178 - 239
Target Start/End: Complemental strand, 20932142 - 20932081
Alignment:
Q  178 tattcattcataatcatctaatttttgaaatactaaattaattcaattttaatttataaaaa 239  Q
    |||||||||||||| ||||||| ||||||||| ||||| ||||||||| ||| || ||||||    
T  20932142 tattcattcataattatctaatatttgaaatattaaatcaattcaattataaattttaaaaa 20932081  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 178 - 225
Target Start/End: Complemental strand, 32975283 - 32975236
Alignment:
Q  178 tattcattcataatcatctaatttttgaaatactaaattaattcaatt 225  Q
    |||||||||||||| ||||||| ||||||||| ||||| |||||||||    
T  32975283 tattcattcataattatctaatatttgaaatattaaatcaattcaatt 32975236  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 191
Target Start/End: Original strand, 3082884 - 3082924
Alignment:
Q  151 atcattaaatttaatcaataatttatctattcattcataat 191  Q
    |||||||||||| | |||||||||||||||| |||||||||    
T  3082884 atcattaaattttaacaataatttatctatttattcataat 3082924  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 191
Target Start/End: Complemental strand, 45683128 - 45683088
Alignment:
Q  151 atcattaaatttaatcaataatttatctattcattcataat 191  Q
    |||||||||||| | |||||||||||||||||||| |||||    
T  45683128 atcattaaattttaacaataatttatctattcatttataat 45683088  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 83 - 131
Target Start/End: Complemental strand, 53717508 - 53717460
Alignment:
Q  83 taattaatacttaataaacatataatatctccaacccaacacttcaaaa 131  Q
    |||||||||| ||||||||||  ||| ||||||||||||||| ||||||    
T  53717508 taattaatacgtaataaacattcaatctctccaacccaacacatcaaaa 53717460  T

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Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 151 - 239
Target Start/End: Original strand, 31437382 - 31437470
Alignment:
Q  151 atcattaaatttaatcaataatttatctattcattcataatcatctaatttttgaaatactaaattaattcaattttaatttataaaaa 239  Q
    |||||||||||  | |||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||| ||| |||||||||    
T  31437382 atcattaaattgtaacaataatttatctattcattcataattatctaatttttgaaatattatattaattcaattataaattataaaaa 31437470  T

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Target: chr4 (Bit Score: 44; Significance: 7e-16; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 167 - 234
Target Start/End: Original strand, 37330187 - 37330253
Alignment:
Q  167 aataatttatctattcattcataatcatctaatttttgaaatactaaattaattcaattttaatttat 234  Q
    |||||||| |||||| ||||||||| ||||||||||||||||| ||||||||||||||| ||||||||    
T  37330187 aataatttgtctatt-attcataattatctaatttttgaaatattaaattaattcaattataatttat 37330253  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 83 - 131
Target Start/End: Original strand, 11025694 - 11025742
Alignment:
Q  83 taattaatacttaataaacatataatatctccaacccaacacttcaaaa 131  Q
    ||||||||||| ||||| |||||||| ||||||||||||||| ||||||    
T  11025694 taattaatactaaataagcatataatctctccaacccaacacctcaaaa 11025742  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 151 - 202
Target Start/End: Complemental strand, 17999663 - 17999612
Alignment:
Q  151 atcattaaatttaatcaataatttatctattcattcataatcatctaatttt 202  Q
    |||||||||||| | ||||||| ||| |||||||||||||| ||||||||||    
T  17999663 atcattaaattttaacaataatatatatattcattcataattatctaatttt 17999612  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 239
Target Start/End: Original strand, 23084788 - 23084853
Alignment:
Q  174 tatctattcattcataatcatctaatttttgaaatactaaattaattcaattttaatttataaaaa 239  Q
    |||||||||||||| ||| |  |||||||||||||| |||| |||||||||| ||| ||| |||||    
T  23084788 tatctattcattcacaattaagtaatttttgaaatattaaactaattcaattataaattacaaaaa 23084853  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 220
Target Start/End: Complemental strand, 29336533 - 29336465
Alignment:
Q  151 atcattaaatttaatcaataatttatctattcattcataatcatctaatttttgaaatactaaattaatt 220  Q
    |||||||||||| | |||||||||||||||| ||||||||| || |||  ||||||||| | ||||||||    
T  29336533 atcattaaatttgaacaataatttatctattaattcataattatataa-ctttgaaatattgaattaatt 29336465  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 83 - 131
Target Start/End: Complemental strand, 33604546 - 33604498
Alignment:
Q  83 taattaatacttaataaacatataatatctccaacccaacacttcaaaa 131  Q
    |||||||||||||||||||||  ||| ||||||||||| ||| ||||||    
T  33604546 taattaatacttaataaacatccaatctctccaacccagcacctcaaaa 33604498  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 165 - 244
Target Start/End: Complemental strand, 30277844 - 30277761
Alignment:
Q  165 tcaataatttatctattcatt----cataatcatctaatttttgaaatactaaattaattcaattttaatttataaaaatatgt 244  Q
    ||||| |||||||||||||||    |||||| ||||||||||||||| | ||| ||||||||||| ||| ||||||||||||||    
T  30277844 tcaatgatttatctattcatttattcataattatctaatttttgaaaaattaatttaattcaattataaattataaaaatatgt 30277761  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 152 - 202
Target Start/End: Complemental strand, 35647518 - 35647468
Alignment:
Q  152 tcattaaatttaatcaataatttatctattcattcataatcatctaatttt 202  Q
    ||||||||||| | ||||| ||||||||||||||| |||| ||||||||||    
T  35647518 tcattaaattttaacaatattttatctattcattcttaattatctaatttt 35647468  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 220
Target Start/End: Complemental strand, 30252825 - 30252757
Alignment:
Q  151 atcattaaatttaatcaataatttatctattcattcataatcatctaatttttgaaatactaaattaatt 220  Q
    |||||||||||| | ||||||||||| |||||| ||||||| || |||||||| ||||| | ||||||||    
T  30252825 atcattaaattttaacaataatttatatattcactcataattatataattttt-aaatattgaattaatt 30252757  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 151 - 220
Target Start/End: Complemental strand, 14500844 - 14500776
Alignment:
Q  151 atcattaaatttaatcaataatttatctattcattcataatcatctaatttttgaaatactaaattaatt 220  Q
    |||||||||||| | ||||||||||||||||||||||||||||| |||  ||||||||| | ||||||||    
T  14500844 atcattaaattttaacaataatttatctattcattcataatcatataa-ctttgaaatattgaattaatt 14500776  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 154 - 236
Target Start/End: Original strand, 49380530 - 49380612
Alignment:
Q  154 attaaatttaatcaataatttatctattcattcataatcatctaatttttgaaatactaaattaattcaattttaatttataa 236  Q
    ||||||||| | |||||||||||||||  ||||  ||| || |||||||| ||||| ||||||||||||||| || |||||||    
T  49380530 attaaattttagcaataatttatctatctattctaaattatttaatttttaaaatattaaattaattcaattatattttataa 49380612  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 151 - 239
Target Start/End: Complemental strand, 26405808 - 26405721
Alignment:
Q  151 atcattaaatttaatcaataatttatctattcattcataatcatctaatttttgaaatactaaattaattcaattttaatttataaaaa 239  Q
    |||||||||||| | ||||||||||| |||||||||||||| || ||| |||||||||| | || ||||| |||| ||| |||||||||    
T  26405808 atcattaaatttcaacaataatttatatattcattcataattatataa-ttttgaaatattgaagtaatttaattataaattataaaaa 26405721  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 151 - 191
Target Start/End: Complemental strand, 25188058 - 25188018
Alignment:
Q  151 atcattaaatttaatcaataatttatctattcattcataat 191  Q
    |||||||||||| | ||||||||||||||||||||||||||    
T  25188058 atcattaaattttaacaataatttatctattcattcataat 25188018  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 151 - 202
Target Start/End: Complemental strand, 20639190 - 20639139
Alignment:
Q  151 atcattaaatttaatcaataatttatctattcattcataatcatctaatttt 202  Q
    |||||||||||| | ||||||| ||| |||||||||||||| ||||||||||    
T  20639190 atcattaaattttaacaataatatatatattcattcataattatctaatttt 20639139  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 239
Target Start/End: Complemental strand, 42490964 - 42490877
Alignment:
Q  151 atcattaaatttaatcaataatttatctattcattcataatcatctaatttttgaaatactaaattaattcaattttaatttataaaaa 239  Q
    |||||| ||||| | ||||||||||| |||||||||||||| || ||| || | ||||| | |||||||| |||| ||| |||||||||    
T  42490964 atcatttaattttaacaataatttatatattcattcataattatataa-ttataaaatattgaattaatttaattataaattataaaaa 42490877  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 151 - 239
Target Start/End: Original strand, 12614775 - 12614862
Alignment:
Q  151 atcattaaatttaatcaataatttatctattcattcataatcatctaatttttgaaatactaaattaattcaattttaatttataaaaa 239  Q
    |||||||||||| | ||||||||||| |||||||||||||| || ||| |||| ||||  | |||||||| |||| ||| |||||||||    
T  12614775 atcattaaattttaacaataatttatatattcattcataattatataa-ttttaaaatgattaattaatttaattataaattataaaaa 12614862  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 151 - 239
Target Start/End: Original strand, 48573799 - 48573886
Alignment:
Q  151 atcattaaatttaatcaataatttatctattcattcataatcatctaatttttgaaatactaaattaattcaattttaatttataaaaa 239  Q
    |||||||||||| | ||||||||||| |||||||||||||| || ||| |||| ||||| | || ||||| |||| ||| |||||||||    
T  48573799 atcattaaattttaacaataatttatatattcattcataattatataa-ttttaaaatattgaaataatttaattataaattataaaaa 48573886  T

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Target: scaffold1430 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold1430
Description:

Target: scaffold1430; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 178 - 225
Target Start/End: Original strand, 177 - 224
Alignment:
Q  178 tattcattcataatcatctaatttttgaaatactaaattaattcaatt 225  Q
    |||||||||||||| ||||||| ||||||||| ||||| |||||||||    
T  177 tattcattcataattatctaatatttgaaatattaaatcaattcaatt 224  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 151 - 241
Target Start/End: Original strand, 18918722 - 18918811
Alignment:
Q  151 atcattaaatttaatcaataatttatctattcattcataatcatctaatttttgaaatactaaattaattcaattttaatttataaaaata 241  Q
    |||||||||||| | ||||||||||| |||| ||||||||| || ||| |||| ||||| | || ||||| |||| ||| |||||||||||    
T  18918722 atcattaaattttaacaataatttatatatttattcataattatataa-ttttaaaatattgaagtaatttaattataaattataaaaata 18918811  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 83 - 131
Target Start/End: Original strand, 18918640 - 18918688
Alignment:
Q  83 taattaatacttaataaacatataatatctccaacccaacacttcaaaa 131  Q
    ||||||||||||||||||||   ||| ||||||||||||||| ||||||    
T  18918640 taattaatacttaataaacactcaatctctccaacccaacacctcaaaa 18918688  T

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