View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21322_high_4 (Length: 321)
Name: NF21322_high_4
Description: NF21322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21322_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 13 - 305
Target Start/End: Complemental strand, 47902907 - 47902615
Alignment:
| Q |
13 |
gaggagcacagatcaaaaagaataaccaaaataaaaagatggtgaaagattgtacagnnnnnnntggtgcaagaagtgccctactcctatactaacttgg |
112 |
Q |
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| T |
47902907 |
gaggagtacaaatcaataagaataaccaaaataaaaagatggtgaaagattgtacaaaaaaaaatggtgaaagaagtgccctactcctatactaacttgg |
47902808 |
T |
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| Q |
113 |
tttgtaacaagaaacctagctgtttcttagattgatattcttcacaaaaatagataatatataaccnnnnnnngagaagacgtcttctacgataataatt |
212 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |
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| T |
47902807 |
tttgtaacaagaaacctggctgtttcttagattgatattcttcacaaaaatagataatatataaccaaaaaaagagaagacgtcttctacgaaaataatt |
47902708 |
T |
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| Q |
213 |
tacagtgcagattgtttgtcccatcaataatcaattcattaggtcgctggtatggattatatcacctttttgccttaatcgacattattgcat |
305 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47902707 |
tacagtgcagattgtttgtcccatcaataatcaaatcattaggtcgctggtatggattatatcacctttttgccttaatcgacattattgcat |
47902615 |
T |
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