View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21323_high_1 (Length: 787)
Name: NF21323_high_1
Description: NF21323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21323_high_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 373; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 329 - 768
Target Start/End: Original strand, 38543868 - 38544306
Alignment:
| Q |
329 |
gacagaaccaataatcacagttgttcatctaattctcaagctttcacaagatcattaaacttttgactatttccatattttgttttatttgcatttggca |
428 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
38543868 |
gacagaaccaataatcacagttgttcatctaattctcaagctttcacaagatcattaaacttttgactatttccatattttgttttatttgcatt-ggca |
38543966 |
T |
|
| Q |
429 |
tatgcttggaaaatatttaggaatcaaagataaatgtaaacatgaaaattggtgagactatcattgcgtatacgttagatacattagggaataagcatcc |
528 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
38543967 |
tatgcttggaaaatatttaggaatcaaagataaatgtaaacatgaaaattggcgagactatcattgcgtatacgttagatacattagggaataagca-cc |
38544065 |
T |
|
| Q |
529 |
taagtcgtatatttcatgtgcttttttctctcagttacacgtgatatcacacatcccatatgactgaaaatagtgatcgccgggtctatgtatgtattat |
628 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||| ||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38544066 |
taagtcgtatatttcatgtgcttttttctctcaattatacgtgatgtaacacatcccatatgtctgaaaatagtgatcgccgggtctatgtatgtattat |
38544165 |
T |
|
| Q |
629 |
catcggcttacatcgtagtcgtggctgacgctaatttctcaatttaacctatttcctttcttggaattccatagataaatcctttcttggtcgccggaat |
728 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
38544166 |
catcggcttacgtcgtagtcgtggctgacgctaattcctcaatttaacctatttcctttcttggaattccatagataaatcctttcttggtcgctggaat |
38544265 |
T |
|
| Q |
729 |
atat-atggatggtgaggggaaagaagaaaccgcagcttta |
768 |
Q |
| |
|
|||| ||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
38544266 |
atatcatggacggtgaggggaaagaagaaacggcagcttta |
38544306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 177; E-Value: 5e-95
Query Start/End: Original strand, 14 - 262
Target Start/End: Original strand, 38543554 - 38543805
Alignment:
| Q |
14 |
attattctatttagaaatagttgaattttaattttagaaattataattttatgcatgttggtgttgcctatgctaggcattctattcaaaatttatgtgg |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
38543554 |
attattctatttagaaatagttgaattttaattttagaaattataattttatgcatgtaggtgttgcctatggtaggcattctattcaaaatttatgtgg |
38543653 |
T |
|
| Q |
114 |
tgccttccttaggcaatgccttacacaaatannnnnnngatagagaggcgaaaagacaaataaccatcgaaactcacacattgaaactcatacataagt- |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
38543654 |
tgccttccttaggcaatgccttacacaaatatttttttagtagagaggcgaaaagacaaataatcatcgaaactcacacattgaaactcatacataagtg |
38543753 |
T |
|
| Q |
213 |
--ggagggatcagggttccactcttagtcattgctttcggcctaacaatttc |
262 |
Q |
| |
|
||||||||| ||||||||| ||||||||||| ||||| ||||||||||| |
|
|
| T |
38543754 |
gaggagggatcggggttccacccttagtcattgtgttcggtctaacaatttc |
38543805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 715 - 764
Target Start/End: Complemental strand, 30938337 - 30938287
Alignment:
| Q |
715 |
ttggtcgccggaatatat-atggatggtgaggggaaagaagaaaccgcagc |
764 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||||||||||||| ||||| |
|
|
| T |
30938337 |
ttggtcgccggaatatatcatggacggtgaggggaaagaagaaacggcagc |
30938287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University